Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30412 * 125.97386 * 2 1 4 4 N 1.39928 * 108.95918 * 179.97438 * 3 2 1 5 5 C 1.46502 * 125.74819 * 179.97438 * 4 3 2 6 6 C 1.34352 * 108.50062 * 359.72983 * 4 3 2 7 7 Cl 1.73595 * 126.32026 * 180.29768 * 6 4 3 8 8 C 1.38280 * 107.35787 * 0.42603 * 6 4 3 9 9 C 1.47302 * 126.43200 * 179.83269 * 8 6 4 10 10 O 1.21616 * 120.00493 * 269.69164 * 9 8 6 11 11 N 1.34781 * 119.99655 * 89.69213 * 9 8 6 12 12 C 1.46929 * 120.62722 * 359.71754 * 11 9 8 13 13 C 1.52759 * 109.00699 * 233.58278 * 12 11 9 14 14 C 1.53049 * 109.38373 * 305.59028 * 13 12 11 15 15 C 1.53037 * 109.53630 * 61.24360 * 14 13 12 16 16 H 1.08996 * 109.53104 * 58.59581 * 15 14 13 17 17 N 1.46501 * 109.50024 * 178.68283 * 15 14 13 18 18 C 1.46496 * 119.99667 * 59.83522 * 17 15 14 19 19 C 1.36929 * 120.00177 * 239.83769 * 17 15 14 20 20 H 1.08003 * 120.00052 * 22.05597 * 19 17 15 21 21 C 1.38810 * 120.00057 * 202.06122 * 19 17 15 22 22 N 1.31623 * 120.00209 * 12.42920 * 21 19 17 23 23 Si 1.86803 * 119.99958 * 192.42484 * 21 19 17 24 24 H 1.48493 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47090 * 120.00113 * 23 21 19 26 26 H 1.48504 * 109.47351 * 239.99829 * 23 21 19 27 27 C 1.46921 * 120.63071 * 179.97438 * 11 9 8 28 28 H 1.09004 * 109.46933 * 270.00054 * 1 2 3 29 29 H 1.09001 * 109.47310 * 29.99739 * 1 2 3 30 30 H 1.09002 * 109.47120 * 150.00149 * 1 2 3 31 31 H 1.09001 * 109.46855 * 90.03169 * 5 4 3 32 32 H 1.09002 * 109.47072 * 210.02757 * 5 4 3 33 33 H 1.08994 * 109.47554 * 330.02835 * 5 4 3 34 34 H 1.08994 * 109.59096 * 353.42410 * 12 11 9 35 35 H 1.09006 * 109.58373 * 113.84884 * 12 11 9 36 36 H 1.09003 * 109.56569 * 185.55661 * 13 12 11 37 37 H 1.09002 * 109.38817 * 65.51595 * 13 12 11 38 38 H 1.08997 * 109.46089 * 301.21768 * 14 13 12 39 39 H 1.09001 * 109.45683 * 181.25675 * 14 13 12 40 40 H 1.08996 * 109.47709 * 94.31033 * 18 17 15 41 41 H 1.09008 * 109.47082 * 214.30467 * 18 17 15 42 42 H 1.09001 * 109.47344 * 334.30370 * 18 17 15 43 43 H 0.96994 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.58482 * 246.15852 * 27 11 9 45 45 H 1.08998 * 109.58850 * 6.57719 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6460 0.0006 5 6 4.7775 1.5325 0.0002 6 6 3.6459 -0.6971 0.0070 7 17 5.0708 -1.6886 0.0175 8 6 2.3373 -1.1438 0.0006 9 6 1.8922 -2.5479 0.0007 10 8 1.7088 -3.1279 -1.0524 11 7 1.6882 -3.1901 1.1681 12 6 1.9115 -2.5046 2.4484 13 6 2.8655 -3.3400 3.3001 14 6 2.3138 -4.7611 3.4353 15 6 2.2112 -5.4042 2.0504 16 1 3.1951 -5.4187 1.5816 17 7 1.7127 -6.7753 2.1836 18 6 0.4020 -7.0225 2.7894 19 6 2.4719 -7.8258 1.7419 20 1 3.5402 -7.7113 1.6316 21 6 1.8686 -9.0379 1.4358 22 7 0.5586 -9.1133 1.3320 23 14 2.9158 -10.5619 1.1712 24 1 4.3490 -10.2138 1.3436 25 1 2.5367 -11.6012 2.1619 26 1 2.6940 -11.0827 -0.2018 27 6 1.2438 -4.5903 1.1844 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 5.0668 1.7525 1.0279 32 1 5.6052 1.0436 -0.5135 33 1 4.5282 2.4607 -0.5138 34 1 2.3501 -1.5237 2.2661 35 1 0.9624 -2.3911 2.9724 36 1 2.9604 -2.8910 4.2889 37 1 3.8437 -3.3736 2.8204 38 1 1.3253 -4.7249 3.8931 39 1 2.9823 -5.3521 4.0614 40 1 -0.3534 -7.0895 2.0065 41 1 0.4304 -7.9583 3.3478 42 1 0.1536 -6.2038 3.4648 43 1 0.1371 -9.9602 1.1178 44 1 0.2392 -4.6500 1.6034 45 1 1.2420 -4.9851 0.1685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027510950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = 65.912731 kcal Electronic energy + Delta-G solvation = -28478.361211 eV Core-core repulsion = 24559.592869 eV Total energy + Delta-G solvation = -3918.768341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72533 -39.51926 -37.27674 -37.20975 -35.02423 -34.35330 -32.29614 -31.27163 -30.69398 -29.77856 -28.63636 -26.41823 -25.97022 -24.90730 -23.54881 -22.20016 -21.56665 -20.64442 -19.53728 -18.63250 -17.58228 -16.74993 -16.61565 -16.04899 -15.55880 -15.33575 -14.93204 -14.35544 -14.07972 -13.88480 -13.79941 -13.70409 -13.49212 -13.27797 -12.97400 -12.90752 -12.61239 -12.55544 -12.39298 -12.27787 -11.99968 -11.93422 -11.81483 -11.13898 -11.00732 -10.93274 -10.78367 -10.58072 -10.36627 -10.29498 -10.12797 -9.84588 -9.72042 -9.64207 -9.51664 -8.77033 -8.54997 -8.25478 -6.72519 -5.68924 -3.14340 1.07710 1.20027 2.11718 2.22596 2.75459 3.33779 3.41677 3.48364 3.50378 4.03225 4.51338 4.52817 4.71033 4.79826 4.85150 4.98388 5.02534 5.12898 5.24343 5.37010 5.40996 5.48490 5.56875 5.57501 5.63739 5.66476 5.80982 5.96257 6.05138 6.11200 6.18486 6.27578 6.28018 6.42876 6.55090 6.73587 6.82697 6.97636 7.03793 7.19003 7.42433 7.71996 7.76109 7.85462 8.41453 8.47099 9.27213 9.89839 10.38097 11.35910 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017289 B = 0.003269 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.129796 B = 8562.908551 C = 9014.171254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.119 3.881 3 N -0.275 5.275 4 N -0.356 5.356 5 C 0.094 3.906 6 C 0.153 3.847 7 Cl 0.016 6.984 8 C -0.244 4.244 9 C 0.591 3.409 10 O -0.529 6.529 11 N -0.594 5.594 12 C 0.113 3.887 13 C -0.130 4.130 14 C -0.132 4.132 15 C 0.169 3.831 16 H 0.064 0.936 17 N -0.592 5.592 18 C 0.162 3.838 19 C -0.253 4.253 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.906 5.906 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.099 3.901 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.044 0.956 42 H -0.001 1.001 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 23.081 2.304 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 N -0.099 5.099 4 N -0.139 5.139 5 C -0.047 4.047 6 C -0.004 4.004 7 Cl 0.044 6.956 8 C -0.260 4.260 9 C 0.376 3.624 10 O -0.405 6.405 11 N -0.327 5.327 12 C -0.010 4.010 13 C -0.169 4.169 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.083 0.917 17 N -0.313 5.313 18 C 0.017 3.983 19 C -0.383 4.383 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.551 5.551 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.025 4.025 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.532 23.840 1.707 24.533 hybrid contribution 0.847 -1.732 -0.132 1.933 sum 6.380 22.108 1.575 23.063 Atomic orbital electron populations 1.20317 0.85314 1.04278 1.03765 1.22300 0.97174 0.88283 0.97011 1.77246 0.84790 1.21544 1.26278 1.48323 1.06572 1.02628 1.56332 1.22047 0.83882 0.94522 1.04236 1.21953 0.90089 0.84090 1.04229 1.98454 1.35178 1.65379 1.96622 1.19872 0.90286 0.95617 1.20200 1.17154 0.77475 0.83919 0.83855 1.90813 1.51450 1.67213 1.30989 1.48209 1.65895 1.13591 1.04994 1.21549 0.99526 0.95513 0.84405 1.21825 0.99090 0.96839 0.99176 1.22080 1.00953 0.94039 1.00107 1.20630 0.96211 0.85071 0.92102 0.91746 1.43947 1.19003 0.99522 1.68855 1.20793 0.86525 0.96176 0.94776 1.19267 0.90164 0.90071 1.38808 0.91347 1.25012 0.95689 0.98939 0.99924 1.70079 1.07853 1.24631 1.52542 0.86186 0.79657 0.83308 0.77402 1.20372 1.21684 1.21708 1.22597 0.98561 0.77735 1.03583 0.89652 0.90056 0.89664 0.89825 0.89064 0.88326 0.90930 0.91522 0.91370 0.91846 0.92197 0.91741 0.95303 0.93742 0.98244 0.93805 0.91854 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.01 0.37 -0.40 16 2 C 0.12 1.50 7.26 -82.02 -0.60 0.90 16 3 N -0.28 -3.36 12.49 33.90 0.42 -2.94 16 4 N -0.36 -3.88 3.98 -64.32 -0.26 -4.13 16 5 C 0.09 0.57 11.28 59.85 0.67 1.25 16 6 C 0.15 1.94 7.40 -16.43 -0.12 1.82 16 7 Cl 0.02 0.18 28.57 -51.86 -1.48 -1.30 16 8 C -0.24 -3.52 3.88 -105.02 -0.41 -3.92 16 9 C 0.59 10.25 7.08 -12.57 -0.09 10.16 16 10 O -0.53 -11.36 16.52 5.26 0.09 -11.28 16 11 N -0.59 -9.66 2.98 -174.32 -0.52 -10.18 16 12 C 0.11 1.45 6.31 -3.93 -0.02 1.43 16 13 C -0.13 -1.69 6.06 -26.83 -0.16 -1.85 16 14 C -0.13 -2.17 5.13 -26.69 -0.14 -2.31 16 15 C 0.17 3.45 2.74 -67.79 -0.19 3.26 16 16 H 0.06 1.40 7.86 -51.93 -0.41 1.00 16 17 N -0.59 -14.65 2.82 -173.32 -0.49 -15.13 16 18 C 0.16 3.91 7.91 59.84 0.47 4.38 16 19 C -0.25 -6.99 9.60 -15.06 -0.14 -7.14 16 20 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 21 C 0.00 0.08 5.11 -17.43 -0.09 -0.01 16 22 N -0.91 -26.49 10.63 55.49 0.59 -25.90 16 23 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.10 1.92 5.80 -3.69 -0.02 1.90 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.86 6.23 -51.93 -0.32 0.54 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.76 7.41 -51.93 -0.39 0.37 16 41 H 0.04 1.16 7.20 -51.92 -0.37 0.79 16 42 H 0.00 -0.02 6.45 -51.93 -0.33 -0.35 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.22 7.52 -51.93 -0.39 0.83 16 45 H 0.09 2.13 7.00 -51.93 -0.36 1.77 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -33.56 378.16 -8.11 -41.67 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.68 Total: -3.06 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -0.46 Total: 9.46 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.25 Total: -58.29 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.48 Total: -1.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.56 -8.11 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027510950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.579 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds