Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38074 * 126.27950 * 2 1 4 4 C 1.47382 * 126.41929 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00214 * 90.00865 * 4 3 2 6 6 N 1.34776 * 119.99917 * 270.00065 * 4 3 2 7 7 C 1.46922 * 120.63250 * 359.72201 * 6 4 3 8 8 C 1.53629 * 108.54163 * 126.36788 * 7 6 4 9 9 C 1.53041 * 109.24156 * 54.86059 * 8 7 6 10 10 C 1.53040 * 109.53652 * 298.50942 * 9 8 7 11 11 H 1.09006 * 109.52732 * 301.40007 * 10 9 8 12 12 N 1.46505 * 109.50067 * 181.31554 * 10 9 8 13 13 C 1.46498 * 119.99946 * 300.16422 * 12 10 9 14 14 C 1.36938 * 119.99571 * 120.16175 * 12 10 9 15 15 H 1.07990 * 120.00110 * 20.40710 * 14 12 10 16 16 C 1.38819 * 119.99359 * 200.40654 * 14 12 10 17 17 N 1.31623 * 120.00051 * 14.98896 * 16 14 12 18 18 Si 1.86797 * 119.99949 * 194.98410 * 16 14 12 19 19 H 1.48502 * 109.47023 * 85.00094 * 18 16 14 20 20 H 1.48490 * 109.47463 * 205.00351 * 18 16 14 21 21 H 1.48503 * 109.47320 * 325.00778 * 18 16 14 22 22 C 1.46935 * 120.62758 * 180.02562 * 6 4 3 23 23 C 1.41383 * 107.15427 * 180.02562 * 3 2 1 24 24 Cl 1.73597 * 126.00605 * 179.97438 * 23 3 2 25 25 N 1.30532 * 107.99014 * 359.71592 * 23 3 2 26 26 N 1.34232 * 126.28317 * 179.97438 * 2 1 3 27 27 C 1.46498 * 125.73853 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47149 * 270.02314 * 1 2 3 29 29 H 1.08991 * 109.47413 * 30.02634 * 1 2 3 30 30 H 1.08998 * 109.46955 * 150.02801 * 1 2 3 31 31 H 1.08999 * 109.58888 * 246.20296 * 7 6 4 32 32 H 1.08998 * 109.58662 * 6.63320 * 7 6 4 33 33 H 1.08995 * 109.63454 * 294.87049 * 8 7 6 34 34 H 1.08997 * 109.43349 * 174.72502 * 8 7 6 35 35 H 1.08999 * 109.46443 * 178.49246 * 9 8 7 36 36 H 1.08996 * 109.46387 * 58.52876 * 9 8 7 37 37 H 1.09004 * 109.47215 * 95.11721 * 13 12 10 38 38 H 1.08990 * 109.47001 * 215.12039 * 13 12 10 39 39 H 1.09004 * 109.47053 * 335.12003 * 13 12 10 40 40 H 0.97000 * 119.99946 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.58641 * 353.36823 * 22 6 4 42 42 H 1.09002 * 109.58697 * 113.65739 * 22 6 4 43 43 H 1.08999 * 109.47693 * 89.99283 * 27 26 2 44 44 H 1.09003 * 109.47087 * 329.99621 * 27 26 2 45 45 H 1.08996 * 109.47274 * 209.99459 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1131 0.0000 4 6 1.8857 2.5202 -0.0005 5 8 1.7046 3.1011 1.0524 6 7 1.6857 3.1633 -1.1680 7 6 1.9063 2.4768 -2.4481 8 6 0.6356 2.6129 -3.3007 9 6 0.2754 4.0942 -3.4362 10 6 -0.0091 4.6804 -2.0515 11 1 -0.8248 4.1296 -1.5832 12 7 -0.3843 6.0903 -2.1849 13 6 0.5499 7.0428 -2.7902 14 6 -1.6083 6.5177 -1.7440 15 1 -2.1565 5.9319 -1.0212 16 6 -2.1441 7.7040 -2.2261 17 7 -1.6378 8.2648 -3.3039 18 14 -3.5840 8.5045 -1.3455 19 1 -3.0768 9.3506 -0.2355 20 1 -4.3434 9.3474 -2.3034 21 1 -4.4762 7.4516 -0.7972 22 6 1.2493 4.5662 -1.1846 23 6 3.6598 0.6498 -0.0006 24 17 5.0841 1.6423 -0.0015 25 7 3.6340 -0.6552 0.0052 26 7 2.3013 -1.0820 0.0005 27 6 1.8492 -2.4755 0.0006 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 2.7488 2.9337 -2.9673 32 1 2.1146 1.4225 -2.2662 33 1 -0.1860 2.0812 -2.8210 34 1 0.8152 2.1904 -4.2893 35 1 -0.6105 4.1967 -4.0629 36 1 1.1073 4.6299 -3.8934 37 1 0.3208 7.1527 -3.8502 38 1 0.4545 8.0093 -2.2956 39 1 1.5694 6.6748 -2.6751 40 1 -2.0125 9.0936 -3.6410 41 1 1.0241 4.8909 -0.1688 42 1 2.0404 5.1901 -1.6008 43 1 1.7372 -2.8213 -1.0270 44 1 0.8903 -2.5463 0.5141 45 1 2.5834 -3.0957 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027666981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = 66.150641 kcal Electronic energy + Delta-G solvation = -28436.672794 eV Core-core repulsion = 24517.914769 eV Total energy + Delta-G solvation = -3918.758025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81955 -39.55404 -37.28790 -36.99677 -35.02950 -33.77714 -32.64725 -32.03709 -31.25607 -28.98173 -27.79105 -27.11268 -25.98848 -25.03943 -23.58498 -22.24184 -21.51843 -20.80856 -19.48773 -18.58035 -17.46146 -16.72262 -16.60318 -16.06990 -15.68796 -15.22049 -14.97362 -14.66158 -14.05789 -13.92891 -13.79814 -13.63687 -13.53702 -13.38398 -13.22461 -13.07784 -12.66288 -12.64067 -12.40254 -12.25836 -11.92956 -11.81560 -11.80162 -11.05380 -10.94745 -10.88534 -10.82641 -10.62675 -10.38093 -10.28604 -10.10742 -9.85202 -9.80882 -9.64804 -9.51312 -8.78616 -8.58176 -8.28015 -6.75754 -5.69976 -3.13945 1.16419 1.28160 2.00594 2.39001 2.72092 3.32471 3.41843 3.48186 3.49060 4.11517 4.23016 4.52296 4.67025 4.68201 4.74744 4.93864 5.03116 5.05830 5.15076 5.22291 5.34847 5.45341 5.48648 5.52182 5.57154 5.64424 5.70522 5.83184 5.90666 6.03938 6.18875 6.25973 6.40846 6.43884 6.55073 6.69849 6.83446 6.96397 7.02377 7.06556 7.41793 7.67144 7.74665 7.84320 8.38096 8.43725 9.25583 9.89071 10.36546 11.34795 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.003095 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.747973 B = 9043.733179 C = 9486.997529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 C -0.260 4.260 4 C 0.593 3.407 5 O -0.531 6.531 6 N -0.594 5.594 7 C 0.112 3.888 8 C -0.130 4.130 9 C -0.132 4.132 10 C 0.171 3.829 11 H 0.064 0.936 12 N -0.592 5.592 13 C 0.162 3.838 14 C -0.254 4.254 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.907 5.907 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.097 3.903 23 C 0.156 3.844 24 Cl 0.018 6.982 25 N -0.282 5.282 26 N -0.351 5.351 27 C 0.097 3.903 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.042 0.958 39 H -0.001 1.001 40 H 0.252 0.748 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -22.099 2.137 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.005 3.995 3 C -0.275 4.275 4 C 0.379 3.621 5 O -0.408 6.408 6 N -0.326 5.326 7 C -0.011 4.011 8 C -0.168 4.168 9 C -0.172 4.172 10 C 0.062 3.938 11 H 0.083 0.917 12 N -0.314 5.314 13 C 0.017 3.983 14 C -0.383 4.383 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.552 5.552 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.206 1.206 22 C -0.027 4.027 23 C -0.036 4.036 24 Cl 0.046 6.954 25 N -0.107 5.107 26 N -0.133 5.133 27 C -0.043 4.043 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.778 -22.694 2.615 24.473 hybrid contribution -0.921 1.207 0.237 1.536 sum 7.857 -21.487 2.852 23.056 Atomic orbital electron populations 1.20628 0.85707 1.04895 1.04551 1.21389 0.94913 0.85437 0.97713 1.19795 0.91074 0.94623 1.22033 1.17148 0.77134 0.84152 0.83695 1.90791 1.51349 1.67567 1.31054 1.48111 1.65868 1.13479 1.05186 1.21767 0.98123 0.97027 0.84215 1.21999 0.96982 0.98723 0.99141 1.22127 1.01704 0.93132 1.00224 1.20566 0.93895 0.86865 0.92495 0.91727 1.43903 1.15261 1.01308 1.70943 1.20791 0.87427 0.92273 0.97783 1.19234 0.95153 1.05813 1.18112 0.91300 1.24936 0.98496 0.99732 0.96468 1.70090 1.43448 1.20280 1.21391 0.86280 0.82042 0.79387 0.78869 1.21445 1.21852 1.20596 1.22479 0.98130 0.78886 1.03193 1.22501 0.88693 0.90419 1.01999 1.98418 1.35361 1.64851 1.96772 1.77148 0.96753 1.10558 1.26213 1.48032 1.02750 1.06517 1.55994 1.22030 1.01432 0.76726 1.04130 0.88976 0.88652 0.90101 0.91463 0.90769 0.91924 0.91453 0.91488 0.92406 0.95168 0.93893 0.98224 0.93805 0.89073 0.91701 0.89902 0.88768 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.70 36.01 0.35 -0.44 16 2 C 0.14 1.48 6.90 -81.60 -0.56 0.92 16 3 C -0.26 -3.64 3.86 -105.04 -0.41 -4.04 16 4 C 0.59 9.90 7.05 -12.54 -0.09 9.81 16 5 O -0.53 -10.91 16.52 5.27 0.09 -10.82 16 6 N -0.59 -9.34 2.97 -173.76 -0.52 -9.86 16 7 C 0.11 1.43 6.37 -3.49 -0.02 1.41 16 8 C -0.13 -1.66 6.10 -26.38 -0.16 -1.82 16 9 C -0.13 -2.25 5.14 -26.69 -0.14 -2.38 16 10 C 0.17 3.40 2.74 -67.79 -0.19 3.22 16 11 H 0.06 1.34 7.85 -51.93 -0.41 0.93 16 12 N -0.59 -14.52 2.82 -173.32 -0.49 -15.01 16 13 C 0.16 3.91 8.03 59.85 0.48 4.39 16 14 C -0.25 -6.92 9.61 -15.06 -0.14 -7.06 16 15 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 17 N -0.91 -26.19 10.67 55.49 0.59 -25.60 16 18 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.10 1.78 5.78 -3.69 -0.02 1.76 16 23 C 0.16 2.14 7.89 -16.91 -0.13 2.01 16 24 Cl 0.02 0.24 29.19 -51.86 -1.51 -1.28 16 25 N -0.28 -3.58 12.50 33.17 0.41 -3.17 16 26 N -0.35 -3.45 3.98 -63.34 -0.25 -3.70 16 27 C 0.10 0.45 11.06 59.85 0.66 1.11 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.89 7.96 -51.93 -0.41 0.48 16 30 H 0.08 0.38 7.69 -51.93 -0.40 -0.02 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.87 6.25 -51.93 -0.32 0.54 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 37 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 38 H 0.04 1.13 7.22 -51.93 -0.37 0.76 16 39 H 0.00 -0.01 6.37 -51.93 -0.33 -0.35 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 42 H 0.06 1.20 6.51 -51.93 -0.34 0.86 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.22 7.62 -51.93 -0.40 -0.18 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.76 377.53 -8.11 -41.87 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.64 Total: -3.88 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.46 Total: 8.85 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.25 Total: -57.34 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.51 Total: -1.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.76 -8.11 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027666981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.021 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds