Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38074 * 126.27950 * 2 1 4 4 C 1.47382 * 126.41929 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00214 * 90.00865 * 4 3 2 6 6 N 1.34776 * 119.99917 * 270.00065 * 4 3 2 7 7 C 1.46922 * 120.63250 * 359.72201 * 6 4 3 8 8 C 1.53629 * 108.54163 * 126.36788 * 7 6 4 9 9 C 1.53041 * 109.24156 * 54.86059 * 8 7 6 10 10 C 1.53040 * 109.53652 * 298.50942 * 9 8 7 11 11 H 1.09006 * 109.52732 * 301.40007 * 10 9 8 12 12 N 1.46505 * 109.50067 * 181.31554 * 10 9 8 13 13 C 1.46498 * 119.99946 * 300.16422 * 12 10 9 14 14 C 1.36938 * 119.99571 * 120.16175 * 12 10 9 15 15 H 1.07990 * 120.00110 * 20.40710 * 14 12 10 16 16 C 1.38819 * 119.99359 * 200.40654 * 14 12 10 17 17 N 1.31623 * 120.00051 * 14.98896 * 16 14 12 18 18 Si 1.86797 * 119.99949 * 194.98410 * 16 14 12 19 19 H 1.48502 * 109.47023 * 85.00094 * 18 16 14 20 20 H 1.48490 * 109.47463 * 205.00351 * 18 16 14 21 21 H 1.48503 * 109.47320 * 325.00778 * 18 16 14 22 22 C 1.46935 * 120.62758 * 180.02562 * 6 4 3 23 23 C 1.41383 * 107.15427 * 180.02562 * 3 2 1 24 24 Cl 1.73597 * 126.00605 * 179.97438 * 23 3 2 25 25 N 1.30532 * 107.99014 * 359.71592 * 23 3 2 26 26 N 1.34232 * 126.28317 * 179.97438 * 2 1 3 27 27 C 1.46498 * 125.73853 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47149 * 270.02314 * 1 2 3 29 29 H 1.08991 * 109.47413 * 30.02634 * 1 2 3 30 30 H 1.08998 * 109.46955 * 150.02801 * 1 2 3 31 31 H 1.08999 * 109.58888 * 246.20296 * 7 6 4 32 32 H 1.08998 * 109.58662 * 6.63320 * 7 6 4 33 33 H 1.08995 * 109.63454 * 294.87049 * 8 7 6 34 34 H 1.08997 * 109.43349 * 174.72502 * 8 7 6 35 35 H 1.08999 * 109.46443 * 178.49246 * 9 8 7 36 36 H 1.08996 * 109.46387 * 58.52876 * 9 8 7 37 37 H 1.09004 * 109.47215 * 95.11721 * 13 12 10 38 38 H 1.08990 * 109.47001 * 215.12039 * 13 12 10 39 39 H 1.09004 * 109.47053 * 335.12003 * 13 12 10 40 40 H 0.97000 * 119.99946 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.58641 * 353.36823 * 22 6 4 42 42 H 1.09002 * 109.58697 * 113.65739 * 22 6 4 43 43 H 1.08999 * 109.47693 * 89.99283 * 27 26 2 44 44 H 1.09003 * 109.47087 * 329.99621 * 27 26 2 45 45 H 1.08996 * 109.47274 * 209.99459 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1131 0.0000 4 6 1.8857 2.5202 -0.0005 5 8 1.7046 3.1011 1.0524 6 7 1.6857 3.1633 -1.1680 7 6 1.9063 2.4768 -2.4481 8 6 0.6356 2.6129 -3.3007 9 6 0.2754 4.0942 -3.4362 10 6 -0.0091 4.6804 -2.0515 11 1 -0.8248 4.1296 -1.5832 12 7 -0.3843 6.0903 -2.1849 13 6 0.5499 7.0428 -2.7902 14 6 -1.6083 6.5177 -1.7440 15 1 -2.1565 5.9319 -1.0212 16 6 -2.1441 7.7040 -2.2261 17 7 -1.6378 8.2648 -3.3039 18 14 -3.5840 8.5045 -1.3455 19 1 -3.0768 9.3506 -0.2355 20 1 -4.3434 9.3474 -2.3034 21 1 -4.4762 7.4516 -0.7972 22 6 1.2493 4.5662 -1.1846 23 6 3.6598 0.6498 -0.0006 24 17 5.0841 1.6423 -0.0015 25 7 3.6340 -0.6552 0.0052 26 7 2.3013 -1.0820 0.0005 27 6 1.8492 -2.4755 0.0006 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 2.7488 2.9337 -2.9673 32 1 2.1146 1.4225 -2.2662 33 1 -0.1860 2.0812 -2.8210 34 1 0.8152 2.1904 -4.2893 35 1 -0.6105 4.1967 -4.0629 36 1 1.1073 4.6299 -3.8934 37 1 0.3208 7.1527 -3.8502 38 1 0.4545 8.0093 -2.2956 39 1 1.5694 6.6748 -2.6751 40 1 -2.0125 9.0936 -3.6410 41 1 1.0241 4.8909 -0.1688 42 1 2.0404 5.1901 -1.6008 43 1 1.7372 -2.8213 -1.0270 44 1 0.8903 -2.5463 0.5141 45 1 2.5834 -3.0957 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027666981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 44.732928 kcal Electronic energy + Delta-G solvation = -28437.601535 eV Core-core repulsion = 24517.914769 eV Total energy + Delta-G solvation = -3919.686767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71970 -40.86442 -38.79015 -37.97061 -36.73227 -34.53493 -34.00337 -33.11732 -32.83993 -30.53605 -28.75430 -28.03105 -27.72307 -26.28260 -25.29005 -23.35061 -22.94442 -21.67601 -20.82629 -19.87265 -18.81492 -18.46068 -17.64325 -17.06418 -16.91585 -16.58889 -16.07291 -16.02261 -15.68466 -15.30029 -15.11235 -14.83040 -14.48018 -14.40695 -14.21320 -14.04975 -13.81424 -13.74004 -13.68135 -13.52992 -13.23037 -12.86731 -12.79885 -12.68606 -12.58807 -12.48688 -12.27562 -12.10854 -11.93555 -11.87440 -11.75654 -11.66442 -11.36697 -11.06104 -10.63180 -10.33527 -9.72210 -9.71180 -8.76104 -7.80966 -5.26764 0.29051 0.45011 1.00384 1.45560 1.47208 1.49690 1.56432 1.60798 2.09061 2.53429 3.31788 3.34141 3.54573 3.63457 3.75450 3.99859 4.02136 4.10508 4.12991 4.26767 4.38400 4.39605 4.43357 4.57620 4.60252 4.69619 4.71261 4.75849 4.78903 4.81510 4.88666 4.93612 4.98186 5.07504 5.16246 5.30406 5.45573 5.51652 5.53068 5.67074 5.74468 5.75276 6.19244 6.33482 6.41179 7.11616 7.16972 7.88724 8.30932 9.21753 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.003095 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.747973 B = 9043.733179 C = 9486.997529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.153 3.847 3 C -0.293 4.293 4 C 0.598 3.402 5 O -0.580 6.580 6 N -0.591 5.591 7 C 0.113 3.887 8 C -0.117 4.117 9 C -0.122 4.122 10 C 0.171 3.829 11 H 0.053 0.947 12 N -0.609 5.609 13 C 0.180 3.820 14 C -0.263 4.263 15 H 0.067 0.933 16 C -0.049 4.049 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.289 1.289 20 H -0.293 1.293 21 H -0.270 1.270 22 C 0.112 3.888 23 C 0.144 3.856 24 Cl 0.011 6.989 25 N -0.297 5.297 26 N -0.337 5.337 27 C 0.082 3.918 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.008 0.992 38 H 0.012 0.988 39 H 0.029 0.971 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -25.460 1.756 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.020 3.980 3 C -0.309 4.309 4 C 0.386 3.614 5 O -0.460 6.460 6 N -0.322 5.322 7 C -0.009 4.009 8 C -0.155 4.155 9 C -0.161 4.161 10 C 0.064 3.936 11 H 0.071 0.929 12 N -0.331 5.331 13 C 0.035 3.965 14 C -0.393 4.393 15 H 0.085 0.915 16 C -0.245 4.245 17 N -0.581 5.581 18 Si 0.793 3.207 19 H -0.216 1.216 20 H -0.220 1.220 21 H -0.194 1.194 22 C -0.013 4.013 23 C -0.047 4.047 24 Cl 0.039 6.961 25 N -0.122 5.122 26 N -0.119 5.119 27 C -0.056 4.056 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.142 0.858 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.347 -26.138 2.216 27.528 hybrid contribution -0.775 2.104 0.390 2.275 sum 7.572 -24.035 2.606 25.334 Atomic orbital electron populations 1.20785 0.83437 1.06170 1.05406 1.21728 0.96016 0.84786 0.95487 1.19597 0.91910 0.93666 1.25690 1.17512 0.75887 0.85113 0.82908 1.90758 1.53486 1.68965 1.32782 1.48126 1.65255 1.12318 1.06489 1.21962 0.98432 0.97931 0.82573 1.21932 0.97157 0.95402 1.01046 1.21934 1.00756 0.96159 0.97292 1.20686 0.93994 0.84510 0.94458 0.92869 1.44099 1.14651 1.03384 1.70982 1.20492 0.88910 0.91210 0.95917 1.19514 0.95964 1.06019 1.17805 0.91524 1.25640 1.01188 1.00370 0.97265 1.70235 1.44840 1.20411 1.22642 0.85324 0.79396 0.78445 0.77540 1.21649 1.21966 1.19442 1.22018 0.97391 0.80896 1.00947 1.22534 0.88438 0.90818 1.02898 1.98407 1.35697 1.65187 1.96840 1.77101 0.98688 1.09892 1.26514 1.48474 1.01561 1.08038 1.53815 1.22580 1.02911 0.73877 1.06229 0.88240 0.90147 0.86015 0.90535 0.88776 0.91018 0.88217 0.93430 0.92652 0.97334 0.96912 0.95250 0.94301 0.92082 0.91747 0.87615 0.85835 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.70 71.24 0.69 -0.54 16 2 C 0.15 2.89 6.90 42.15 0.29 3.18 16 3 C -0.29 -7.81 3.86 -20.14 -0.08 -7.89 16 4 C 0.60 19.87 7.05 86.65 0.61 20.48 16 5 O -0.58 -24.52 16.52 -4.05 -0.07 -24.58 16 6 N -0.59 -18.20 2.97 -821.91 -2.44 -20.64 16 7 C 0.11 2.61 6.37 86.51 0.55 3.16 16 8 C -0.12 -2.65 6.10 30.82 0.19 -2.46 16 9 C -0.12 -4.02 5.14 30.62 0.16 -3.86 16 10 C 0.17 6.87 2.74 45.08 0.12 6.99 16 11 H 0.05 2.23 7.85 -2.38 -0.02 2.21 16 12 N -0.61 -30.52 2.82 -702.27 -1.98 -32.50 16 13 C 0.18 8.91 8.03 127.77 1.03 9.94 16 14 C -0.26 -14.63 9.61 84.03 0.81 -13.82 16 15 H 0.07 3.66 7.81 -2.92 -0.02 3.63 16 16 C -0.05 -2.79 5.06 84.86 0.43 -2.36 16 17 N -0.93 -55.33 10.67 21.65 0.23 -55.10 16 18 Si 0.96 45.77 29.58 68.60 2.03 47.80 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.11 4.19 5.78 86.37 0.50 4.69 16 23 C 0.14 3.80 7.89 85.66 0.68 4.48 16 24 Cl 0.01 0.28 29.19 -2.72 -0.08 0.20 16 25 N -0.30 -6.92 12.50 -48.96 -0.61 -7.53 16 26 N -0.34 -5.50 3.98 -354.31 -1.41 -6.91 16 27 C 0.08 0.39 11.06 127.77 1.41 1.80 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.30 7.96 -2.39 -0.02 1.28 16 30 H 0.12 0.49 7.69 -2.39 -0.02 0.47 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.89 6.25 -2.39 -0.01 1.88 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.85 7.71 -2.39 -0.02 1.83 16 37 H 0.01 0.45 7.40 -2.39 -0.02 0.43 16 38 H 0.01 0.67 7.22 -2.39 -0.02 0.65 16 39 H 0.03 1.25 6.37 -2.38 -0.02 1.23 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.06 2.66 7.00 -2.39 -0.02 2.65 16 42 H 0.06 2.40 6.51 -2.39 -0.02 2.38 16 43 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.12 -0.09 7.62 -2.39 -0.02 -0.11 16 45 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -76.90 377.53 4.06 -72.84 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.00 Total: 2.65 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 7.39 Total: 23.79 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.21 Total: -122.69 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.07 Total: -24.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Total: -76.90 4.06 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027666981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.568 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds