Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47185 * 240.00292 * 3 2 1 5 5 H 1.48500 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46797 * 120.00526 * 3 2 1 7 7 C 1.38810 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99817 * 195.66989 * 7 2 1 9 9 N 1.36936 * 120.00105 * 15.67129 * 7 2 1 10 10 C 1.47602 * 118.64279 * 26.50883 * 9 7 2 11 11 C 1.53954 * 112.14025 * 137.86881 * 10 9 7 12 12 C 1.50878 * 110.09217 * 319.43237 * 11 10 9 13 13 C 1.52564 * 109.35662 * 91.89616 * 12 11 10 14 14 C 1.47099 * 114.32200 * 274.97938 * 13 12 11 15 15 H 1.09002 * 109.32856 * 302.70796 * 14 13 12 16 16 N 1.46500 * 109.32452 * 183.05966 * 14 13 12 17 17 C 1.34786 * 119.99749 * 154.65282 * 16 14 13 18 18 O 1.21473 * 119.99779 * 359.97438 * 17 16 14 19 19 C 1.48457 * 119.99779 * 179.97438 * 17 16 14 20 20 C 1.39530 * 120.54690 * 180.02562 * 19 17 16 21 21 C 1.38763 * 118.26436 * 179.97438 * 20 19 17 22 22 C 1.50702 * 120.42488 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.46771 * 209.99918 * 22 21 20 24 24 F 1.39896 * 109.47430 * 330.00540 * 22 21 20 25 25 N 1.32205 * 119.14447 * 0.02562 * 21 20 19 26 26 C 1.31875 * 121.03759 * 359.97438 * 25 21 20 27 27 N 1.31581 * 121.91855 * 359.97438 * 26 25 21 28 28 C 1.44657 * 118.81283 * 206.51450 * 9 7 2 29 29 H 0.97001 * 119.99862 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.95187 * 17.17733 * 10 9 7 31 31 H 1.09002 * 108.94358 * 258.55092 * 10 9 7 32 32 H 1.08999 * 109.36369 * 199.23600 * 11 10 9 33 33 H 1.09001 * 109.26485 * 79.55732 * 11 10 9 34 34 H 1.08997 * 109.49216 * 331.92289 * 12 11 10 35 35 H 1.09004 * 109.48395 * 211.85687 * 12 11 10 36 36 H 1.09000 * 108.51484 * 153.72489 * 13 12 11 37 37 H 1.09001 * 108.39102 * 36.14277 * 13 12 11 38 38 H 0.96998 * 120.00258 * 334.64987 * 16 14 13 39 39 H 1.08002 * 120.87131 * 0.24968 * 20 19 17 40 40 H 1.09000 * 109.46929 * 90.00495 * 22 21 20 41 41 H 1.08004 * 119.04185 * 179.97438 * 26 25 21 42 42 H 1.09007 * 109.61844 * 150.83081 * 28 9 7 43 43 H 1.09007 * 109.32754 * 30.88862 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0601 -1.2196 0.2521 9 7 1.3637 -2.3659 -0.3214 10 6 0.1797 -2.2984 -1.2001 11 6 0.1719 -3.4238 -2.2506 12 6 1.5632 -3.6345 -2.7949 13 6 2.2712 -4.7064 -1.9719 14 6 2.9230 -4.2025 -0.7533 15 1 3.6394 -3.4262 -1.0219 16 7 3.6265 -5.3028 -0.0894 17 6 4.6795 -5.0438 0.7111 18 8 5.0453 -3.8982 0.8818 19 6 5.3920 -6.1588 1.3843 20 6 6.4830 -5.9037 2.2158 21 6 7.1137 -6.9812 2.8215 22 6 8.2963 -6.7616 3.7294 23 9 9.1442 -7.8727 3.6676 24 9 8.9931 -5.6197 3.3197 25 7 6.6636 -8.2029 2.5918 26 6 5.6294 -8.4088 1.7999 27 7 5.0002 -7.4179 1.2055 28 6 1.8662 -3.6127 0.2130 29 1 -0.4850 0.8401 0.0004 30 1 0.1733 -1.3361 -1.7122 31 1 -0.7194 -2.3782 -0.5891 32 1 -0.4982 -3.1522 -3.0663 33 1 -0.1784 -4.3460 -1.7870 34 1 2.1226 -2.7009 -2.7346 35 1 1.5020 -3.9556 -3.8348 36 1 3.0271 -5.1804 -2.5980 37 1 1.5380 -5.4604 -1.6858 38 1 3.3345 -6.2177 -0.2260 39 1 6.8250 -4.8937 2.3872 40 1 7.9481 -6.6268 4.7534 41 1 5.2889 -9.4204 1.6345 42 1 1.0443 -4.3196 0.3272 43 1 2.3249 -3.4299 1.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034274676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = -58.197589 kcal Electronic energy + Delta-G solvation = -29602.154467 eV Core-core repulsion = 25126.207618 eV Total energy + Delta-G solvation = -4475.946849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.47226 -47.47612 -41.65458 -39.62351 -37.72949 -34.90869 -34.51149 -33.24465 -32.89100 -30.95111 -30.14531 -28.12568 -26.23125 -25.40770 -24.29375 -23.92279 -22.95635 -20.87228 -20.24881 -19.22153 -18.66294 -18.53452 -18.03845 -17.28582 -16.62256 -16.38204 -15.95207 -15.84301 -15.60215 -15.39479 -14.97312 -14.57719 -14.27251 -14.21385 -13.94926 -13.78492 -13.57960 -13.35159 -13.19119 -12.69649 -12.56227 -12.14973 -12.09576 -11.62291 -11.50904 -11.22153 -11.06890 -10.97165 -10.78945 -10.60464 -10.37503 -10.24478 -10.17289 -10.15536 -9.74934 -9.71227 -9.64686 -9.61279 -8.93047 -8.33568 -6.65764 -5.75654 -3.19369 0.03445 0.24407 2.55295 2.68676 2.90900 3.40881 3.43308 3.47337 3.47672 3.50708 3.56075 3.77249 4.15346 4.37034 4.47476 4.52024 4.57606 4.96815 5.09230 5.21272 5.32955 5.43120 5.51195 5.64400 5.71278 5.94499 5.99276 6.11855 6.22071 6.26355 6.36101 6.56914 6.58455 6.60190 6.68417 6.79943 6.89540 7.04432 7.33948 7.44177 7.63620 7.71943 7.90542 8.22281 8.50301 9.26964 9.91720 10.35806 11.31953 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002858 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.108067 B = 9793.554719 C =11291.281340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.582 5.582 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.111 3.889 15 H 0.091 0.909 16 N -0.694 5.694 17 C 0.559 3.441 18 O -0.508 6.508 19 C 0.149 3.851 20 C -0.141 4.141 21 C 0.098 3.902 22 C 0.330 3.670 23 F -0.182 7.182 24 F -0.186 7.186 25 N -0.483 5.483 26 C 0.300 3.700 27 N -0.484 5.484 28 C 0.158 3.842 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.404 0.596 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.211 0.789 42 H 0.034 0.966 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -17.775 2.825 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.087 0.913 9 N -0.303 5.303 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.005 3.995 15 H 0.110 0.890 16 N -0.344 5.344 17 C 0.341 3.659 18 O -0.381 6.381 19 C 0.000 4.000 20 C -0.164 4.164 21 C -0.052 4.052 22 C 0.276 3.724 23 F -0.163 7.163 24 F -0.167 7.167 25 N -0.197 5.197 26 C 0.012 3.988 27 N -0.200 5.200 28 C 0.028 3.972 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.239 0.761 39 H 0.189 0.811 40 H 0.157 0.843 41 H 0.227 0.773 42 H 0.052 0.948 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.110 -17.661 2.753 20.535 hybrid contribution 0.651 1.046 0.007 1.232 sum 10.761 -16.615 2.759 19.987 Atomic orbital electron populations 1.70071 1.05205 1.25512 1.54210 1.25018 0.95250 0.98351 1.00647 0.86382 0.78898 0.83315 0.78286 1.20993 1.21736 1.20824 1.19265 0.92694 0.84743 1.42111 0.91284 1.43596 1.32128 1.01427 1.53140 1.21071 0.88412 0.95864 0.89601 1.22087 0.95884 1.00657 0.99662 1.20825 0.97062 0.99355 0.96591 1.20579 0.99363 0.99072 0.96069 1.21455 0.96196 0.87749 0.94114 0.89047 1.46047 1.30200 1.11668 1.46499 1.17640 0.81161 0.86715 0.80389 1.90891 1.65814 1.19993 1.61408 1.21985 0.92604 0.91964 0.93431 1.22731 0.95425 1.02653 0.95555 1.22195 0.96763 0.90006 0.96204 1.20058 0.81524 0.72564 0.98301 1.93059 1.72550 1.53107 1.97613 1.93072 1.80550 1.50494 1.92583 1.68004 1.13283 1.23007 1.15420 1.25075 0.86840 0.99176 0.87754 1.68402 1.29854 0.99785 1.21964 1.20919 0.93380 0.88610 0.94309 0.93683 0.90594 0.95690 0.92843 0.93642 0.90413 0.93285 0.93272 0.92606 0.76139 0.81092 0.84331 0.77270 0.94798 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.03 11.01 55.49 0.61 -25.42 16 2 C 0.01 0.16 4.87 -17.43 -0.08 0.07 16 3 Si 0.90 22.05 29.58 -169.99 -5.03 17.03 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.26 -7.08 9.45 -15.06 -0.14 -7.22 16 8 H 0.07 1.94 7.88 -52.49 -0.41 1.53 16 9 N -0.58 -14.15 2.27 -172.02 -0.39 -14.54 16 10 C 0.18 4.05 4.66 -2.94 -0.01 4.04 16 11 C -0.14 -2.56 5.71 -27.30 -0.16 -2.72 16 12 C -0.10 -1.66 5.51 -28.02 -0.15 -1.81 16 13 C -0.11 -1.69 4.55 -29.79 -0.14 -1.83 16 14 C 0.11 1.93 2.34 -69.78 -0.16 1.76 16 15 H 0.09 1.89 7.57 -51.93 -0.39 1.49 16 16 N -0.69 -10.10 5.05 -56.37 -0.28 -10.38 16 17 C 0.56 8.74 7.78 -12.04 -0.09 8.65 16 18 O -0.51 -9.86 16.08 5.39 0.09 -9.78 16 19 C 0.15 1.88 6.79 -82.64 -0.56 1.32 16 20 C -0.14 -1.58 9.06 -38.91 -0.35 -1.93 16 21 C 0.10 0.96 6.61 -82.24 -0.54 0.41 16 22 C 0.33 2.58 5.74 36.01 0.21 2.79 16 23 F -0.18 -1.74 17.09 2.25 0.04 -1.70 16 24 F -0.19 -1.73 16.56 2.25 0.04 -1.69 16 25 N -0.48 -4.78 10.08 -10.81 -0.11 -4.88 16 26 C 0.30 2.64 12.27 -92.27 -1.13 1.50 16 27 N -0.48 -5.20 9.70 -11.14 -0.11 -5.31 16 28 C 0.16 3.27 5.24 -4.04 -0.02 3.25 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.08 1.96 6.33 -51.93 -0.33 1.64 16 31 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.76 7.31 -51.93 -0.38 0.38 16 34 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16 38 H 0.40 4.86 7.96 -40.82 -0.33 4.53 16 39 H 0.17 1.88 7.38 -52.49 -0.39 1.49 16 40 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.21 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.03 0.66 8.06 -51.92 -0.42 0.24 16 43 H 0.05 1.10 7.98 -51.93 -0.41 0.69 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -31.97 361.59 -8.54 -40.51 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.49 Total: 2.44 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -3.35 Total: 8.28 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.28 Total: -60.53 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.97 -8.54 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034274676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.691 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds