Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47185 * 240.00292 * 3 2 1 5 5 H 1.48500 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46797 * 120.00526 * 3 2 1 7 7 C 1.38810 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99817 * 195.66989 * 7 2 1 9 9 N 1.36936 * 120.00105 * 15.67129 * 7 2 1 10 10 C 1.47602 * 118.64279 * 26.50883 * 9 7 2 11 11 C 1.53954 * 112.14025 * 137.86881 * 10 9 7 12 12 C 1.50878 * 110.09217 * 319.43237 * 11 10 9 13 13 C 1.52564 * 109.35662 * 91.89616 * 12 11 10 14 14 C 1.47099 * 114.32200 * 274.97938 * 13 12 11 15 15 H 1.09002 * 109.32856 * 302.70796 * 14 13 12 16 16 N 1.46500 * 109.32452 * 183.05966 * 14 13 12 17 17 C 1.34786 * 119.99749 * 154.65282 * 16 14 13 18 18 O 1.21473 * 119.99779 * 359.97438 * 17 16 14 19 19 C 1.48457 * 119.99779 * 179.97438 * 17 16 14 20 20 C 1.39530 * 120.54690 * 180.02562 * 19 17 16 21 21 C 1.38763 * 118.26436 * 179.97438 * 20 19 17 22 22 C 1.50702 * 120.42488 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.46771 * 209.99918 * 22 21 20 24 24 F 1.39896 * 109.47430 * 330.00540 * 22 21 20 25 25 N 1.32205 * 119.14447 * 0.02562 * 21 20 19 26 26 C 1.31875 * 121.03759 * 359.97438 * 25 21 20 27 27 N 1.31581 * 121.91855 * 359.97438 * 26 25 21 28 28 C 1.44657 * 118.81283 * 206.51450 * 9 7 2 29 29 H 0.97001 * 119.99862 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.95187 * 17.17733 * 10 9 7 31 31 H 1.09002 * 108.94358 * 258.55092 * 10 9 7 32 32 H 1.08999 * 109.36369 * 199.23600 * 11 10 9 33 33 H 1.09001 * 109.26485 * 79.55732 * 11 10 9 34 34 H 1.08997 * 109.49216 * 331.92289 * 12 11 10 35 35 H 1.09004 * 109.48395 * 211.85687 * 12 11 10 36 36 H 1.09000 * 108.51484 * 153.72489 * 13 12 11 37 37 H 1.09001 * 108.39102 * 36.14277 * 13 12 11 38 38 H 0.96998 * 120.00258 * 334.64987 * 16 14 13 39 39 H 1.08002 * 120.87131 * 0.24968 * 20 19 17 40 40 H 1.09000 * 109.46929 * 90.00495 * 22 21 20 41 41 H 1.08004 * 119.04185 * 179.97438 * 26 25 21 42 42 H 1.09007 * 109.61844 * 150.83081 * 28 9 7 43 43 H 1.09007 * 109.32754 * 30.88862 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0601 -1.2196 0.2521 9 7 1.3637 -2.3659 -0.3214 10 6 0.1797 -2.2984 -1.2001 11 6 0.1719 -3.4238 -2.2506 12 6 1.5632 -3.6345 -2.7949 13 6 2.2712 -4.7064 -1.9719 14 6 2.9230 -4.2025 -0.7533 15 1 3.6394 -3.4262 -1.0219 16 7 3.6265 -5.3028 -0.0894 17 6 4.6795 -5.0438 0.7111 18 8 5.0453 -3.8982 0.8818 19 6 5.3920 -6.1588 1.3843 20 6 6.4830 -5.9037 2.2158 21 6 7.1137 -6.9812 2.8215 22 6 8.2963 -6.7616 3.7294 23 9 9.1442 -7.8727 3.6676 24 9 8.9931 -5.6197 3.3197 25 7 6.6636 -8.2029 2.5918 26 6 5.6294 -8.4088 1.7999 27 7 5.0002 -7.4179 1.2055 28 6 1.8662 -3.6127 0.2130 29 1 -0.4850 0.8401 0.0004 30 1 0.1733 -1.3361 -1.7122 31 1 -0.7194 -2.3782 -0.5891 32 1 -0.4982 -3.1522 -3.0663 33 1 -0.1784 -4.3460 -1.7870 34 1 2.1226 -2.7009 -2.7346 35 1 1.5020 -3.9556 -3.8348 36 1 3.0271 -5.1804 -2.5980 37 1 1.5380 -5.4604 -1.6858 38 1 3.3345 -6.2177 -0.2260 39 1 6.8250 -4.8937 2.3872 40 1 7.9481 -6.6268 4.7534 41 1 5.2889 -9.4204 1.6345 42 1 1.0443 -4.3196 0.3272 43 1 2.3249 -3.4299 1.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034274676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = -78.549039 kcal Electronic energy + Delta-G solvation = -29603.036972 eV Core-core repulsion = 25126.207618 eV Total energy + Delta-G solvation = -4476.829354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.14698 -48.16202 -42.52443 -40.92559 -39.24899 -36.36112 -35.57763 -34.79402 -33.74108 -32.88105 -31.62831 -28.88466 -27.96608 -26.67493 -25.63134 -24.99405 -24.47748 -22.03593 -21.67125 -20.89591 -19.67323 -19.33661 -18.66999 -18.59939 -18.06246 -17.60201 -17.01681 -16.77430 -16.68800 -16.61194 -16.30449 -16.07462 -15.64999 -15.30617 -15.20457 -14.95435 -14.74822 -14.47838 -14.31315 -14.11030 -14.04080 -13.83355 -13.13753 -13.01083 -12.82613 -12.76681 -12.50986 -12.37267 -12.32927 -12.05697 -12.03737 -11.69030 -11.58048 -11.46272 -11.39817 -11.15457 -11.08106 -10.67313 -10.53438 -10.22706 -8.65418 -7.87836 -5.33700 -0.88209 -0.53803 1.43572 1.44576 1.49824 1.52551 1.71530 2.03745 2.47918 2.50429 2.68817 2.86018 3.02552 3.25319 3.35361 3.59866 3.70588 3.78315 3.82436 3.89556 4.08871 4.10889 4.25491 4.32991 4.41580 4.49432 4.69646 4.74586 4.91820 4.99072 5.03022 5.08415 5.19942 5.22960 5.33684 5.35657 5.42917 5.59883 5.63221 5.71307 5.83749 6.33621 6.40848 6.62784 7.03226 7.17961 7.93242 8.29107 9.16496 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002858 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.108067 B = 9793.554719 C =11291.281340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.052 0.948 9 N -0.596 5.596 10 C 0.183 3.817 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.110 4.110 14 C 0.131 3.869 15 H 0.054 0.946 16 N -0.681 5.681 17 C 0.558 3.442 18 O -0.555 6.555 19 C 0.137 3.863 20 C -0.149 4.149 21 C 0.104 3.896 22 C 0.329 3.671 23 F -0.191 7.191 24 F -0.196 7.196 25 N -0.486 5.486 26 C 0.305 3.695 27 N -0.485 5.485 28 C 0.159 3.841 29 H 0.250 0.750 30 H 0.040 0.960 31 H -0.005 1.005 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.420 0.580 39 H 0.166 0.834 40 H 0.183 0.817 41 H 0.252 0.748 42 H 0.051 0.949 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -20.794 2.346 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.395 4.395 8 H 0.070 0.930 9 N -0.318 5.318 10 C 0.059 3.941 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.148 4.148 14 C 0.024 3.976 15 H 0.072 0.928 16 N -0.332 5.332 17 C 0.342 3.658 18 O -0.432 6.432 19 C -0.011 4.011 20 C -0.172 4.172 21 C -0.046 4.046 22 C 0.275 3.725 23 F -0.172 7.172 24 F -0.177 7.177 25 N -0.200 5.200 26 C 0.018 3.982 27 N -0.201 5.201 28 C 0.030 3.970 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.013 0.987 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.259 0.741 39 H 0.184 0.816 40 H 0.200 0.800 41 H 0.268 0.732 42 H 0.069 0.931 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.667 -20.751 2.261 23.442 hybrid contribution 0.517 1.875 0.228 1.958 sum 11.184 -18.876 2.489 22.082 Atomic orbital electron populations 1.70206 1.06209 1.25765 1.55464 1.25643 0.96019 1.00973 1.01099 0.85492 0.77765 0.79960 0.78163 1.20529 1.21368 1.20833 1.19339 0.92157 0.86417 1.41569 0.93047 1.43727 1.32315 1.01723 1.53991 1.20884 0.86668 0.96606 0.89968 1.21948 0.97484 0.99090 0.98459 1.20800 0.95580 0.98300 0.98847 1.20532 1.00447 0.99008 0.94791 1.20908 0.94398 0.87879 0.94389 0.92813 1.45822 1.29728 1.11746 1.45952 1.18093 0.80971 0.86976 0.79772 1.90867 1.67122 1.22288 1.62904 1.21466 0.93264 0.91938 0.94476 1.22713 0.95481 1.03077 0.95914 1.22488 0.96959 0.89507 0.95641 1.20498 0.80486 0.71762 0.99738 1.93040 1.72823 1.53647 1.97705 1.93054 1.80768 1.51073 1.92846 1.68130 1.13604 1.22735 1.15563 1.25937 0.85829 1.00141 0.86253 1.68397 1.30163 0.99157 1.22411 1.20991 0.94457 0.87803 0.93720 0.94072 0.94125 0.98665 0.91040 0.91551 0.94081 0.89789 0.90619 0.90037 0.74148 0.81646 0.80015 0.73195 0.93070 0.96476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 11.01 21.65 0.24 -55.30 16 2 C -0.04 -2.40 4.87 84.86 0.41 -1.99 16 3 Si 0.96 46.86 29.58 68.60 2.03 48.89 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.26 -15.18 9.45 84.03 0.79 -14.39 16 8 H 0.05 3.08 7.88 -2.91 -0.02 3.06 16 9 N -0.60 -30.02 2.27 -698.15 -1.59 -31.61 16 10 C 0.18 8.70 4.66 86.49 0.40 9.10 16 11 C -0.13 -4.45 5.71 30.23 0.17 -4.27 16 12 C -0.10 -3.01 5.51 29.76 0.16 -2.85 16 13 C -0.11 -3.00 4.55 28.61 0.13 -2.87 16 14 C 0.13 4.54 2.34 43.79 0.10 4.64 16 15 H 0.05 2.30 7.57 -2.39 -0.02 2.28 16 16 N -0.68 -19.26 5.05 -450.56 -2.28 -21.54 16 17 C 0.56 17.67 7.78 86.97 0.68 18.35 16 18 O -0.56 -22.70 16.08 -3.63 -0.06 -22.76 16 19 C 0.14 3.35 6.79 41.99 0.29 3.63 16 20 C -0.15 -3.27 9.06 22.71 0.21 -3.06 16 21 C 0.10 1.86 6.61 42.63 0.28 2.14 16 22 C 0.33 4.49 5.74 71.24 0.41 4.90 16 23 F -0.19 -3.27 17.09 44.97 0.77 -2.50 16 24 F -0.20 -3.46 16.56 44.97 0.74 -2.71 16 25 N -0.49 -8.30 10.08 -188.12 -1.90 -10.20 16 26 C 0.31 4.40 12.27 180.92 2.22 6.62 16 27 N -0.48 -9.32 9.70 -189.16 -1.84 -11.15 16 28 C 0.16 6.73 5.24 87.36 0.46 7.19 16 29 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.04 2.18 6.33 -2.39 -0.02 2.17 16 31 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.00 7.31 -2.39 -0.02 1.98 16 34 H 0.04 1.59 7.48 -2.39 -0.02 1.57 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.88 7.34 -2.39 -0.02 1.86 16 38 H 0.42 9.11 7.96 -92.71 -0.74 8.37 16 39 H 0.17 3.76 7.38 -2.91 -0.02 3.74 16 40 H 0.18 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.25 1.29 8.06 -2.91 -0.02 1.26 16 42 H 0.05 1.97 8.06 -2.38 -0.02 1.95 16 43 H 0.02 0.81 7.98 -2.38 -0.02 0.79 16 Total: -1.00 -74.34 361.59 3.17 -71.17 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.32 Total: 10.56 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 6.72 Total: 27.14 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -7.36 Total: -129.79 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.51 Total: -5.22 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.34 3.17 -71.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034274676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.377 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds