Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47025 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47111 * 240.00352 * 3 2 1 6 6 H 1.48503 * 109.46840 * 120.00550 * 3 2 1 7 7 C 1.38815 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00021 * 151.48155 * 7 2 1 9 9 N 1.36942 * 119.99731 * 331.48462 * 7 2 1 10 10 C 1.43438 * 120.53259 * 325.95009 * 9 7 2 11 11 C 1.54404 * 116.39197 * 271.73037 * 10 9 7 12 12 C 1.54845 * 110.07185 * 318.65940 * 11 10 9 13 13 C 1.50129 * 110.81239 * 321.06806 * 12 11 10 14 14 C 1.52529 * 105.41051 * 97.68647 * 13 12 11 15 15 H 1.09002 * 108.40210 * 31.74247 * 14 13 12 16 16 N 1.46498 * 108.52218 * 149.34810 * 14 13 12 17 17 C 1.34782 * 120.00273 * 209.71568 * 16 14 13 18 18 O 1.21478 * 119.99866 * 0.02562 * 17 16 14 19 19 C 1.48449 * 120.00158 * 179.97438 * 17 16 14 20 20 C 1.39533 * 120.55299 * 180.02562 * 19 17 16 21 21 C 1.38762 * 118.26953 * 179.97438 * 20 19 17 22 22 C 1.50698 * 120.42939 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47218 * 300.00408 * 22 21 20 24 24 F 1.39905 * 109.46840 * 60.00017 * 22 21 20 25 25 N 1.32207 * 119.14420 * 0.02562 * 21 20 19 26 26 C 1.31879 * 121.03486 * 359.97438 * 25 21 20 27 27 N 1.31589 * 121.92108 * 359.73935 * 26 25 21 28 28 C 1.46242 * 114.28007 * 270.59306 * 14 13 12 29 29 H 0.97000 * 120.00340 * 174.22478 * 1 2 3 30 30 H 1.09000 * 108.15626 * 33.31491 * 10 9 7 31 31 H 1.08999 * 108.15464 * 149.87938 * 10 9 7 32 32 H 1.09000 * 109.44321 * 198.44210 * 11 10 9 33 33 H 1.09005 * 109.34250 * 78.81345 * 11 10 9 34 34 H 1.09000 * 109.20693 * 200.73135 * 12 11 10 35 35 H 1.08999 * 109.17141 * 81.38858 * 12 11 10 36 36 H 1.09000 * 110.25215 * 338.71495 * 13 12 11 37 37 H 1.08996 * 110.36884 * 216.71706 * 13 12 11 38 38 H 0.97000 * 119.99879 * 29.72318 * 16 14 13 39 39 H 1.08005 * 120.86476 * 0.02562 * 20 19 17 40 40 H 1.08996 * 109.46871 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.04193 * 179.97438 * 26 25 21 42 42 H 1.09003 * 109.83779 * 298.90285 * 28 14 13 43 43 H 1.08996 * 109.84825 * 177.91689 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9919 -1.2587 -0.4471 9 7 1.4501 -2.3164 0.5651 10 6 0.6053 -2.2017 1.7187 11 6 1.3096 -2.2428 3.0921 12 6 2.4179 -3.3242 3.0887 13 6 1.9717 -4.5430 2.3341 14 6 2.5686 -4.3964 0.9381 15 1 3.5159 -3.8640 1.0231 16 7 2.8346 -5.7340 0.4030 17 6 3.8450 -5.9223 -0.4690 18 8 4.5353 -4.9830 -0.8107 19 6 4.1150 -7.2778 -1.0108 20 6 5.1582 -7.4859 -1.9136 21 6 5.3686 -8.7722 -2.3896 22 6 6.4812 -9.0520 -3.3669 23 9 6.2835 -8.2962 -4.5274 24 9 7.7075 -8.7067 -2.7887 25 7 4.5798 -9.7491 -1.9756 26 6 3.6023 -9.5177 -1.1210 27 7 3.3694 -8.3156 -0.6392 28 6 1.7155 -3.6786 -0.0083 29 1 -0.4851 -0.8358 -0.0845 30 1 0.0616 -1.2595 1.6491 31 1 -0.1238 -3.0114 1.6876 32 1 0.5797 -2.4759 3.8673 33 1 1.7550 -1.2696 3.2987 34 1 2.6493 -3.6037 4.1166 35 1 3.3128 -2.9182 2.6173 36 1 0.8836 -4.5745 2.2778 37 1 2.3504 -5.4457 2.8134 38 1 2.2836 -6.4841 0.6761 39 1 5.7862 -6.6673 -2.2330 40 1 6.4842 -10.1121 -3.6202 41 1 2.9771 -10.3395 -0.8046 42 1 0.7754 -4.2146 -0.1391 43 1 2.2249 -3.5836 -0.9672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034274677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = -75.144797 kcal Electronic energy + Delta-G solvation = -29634.208546 eV Core-core repulsion = 25157.526811 eV Total energy + Delta-G solvation = -4476.681735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.23730 -48.23763 -42.60945 -41.18159 -39.46375 -36.55375 -35.70075 -34.86009 -33.77179 -32.89186 -31.53177 -28.91747 -28.02488 -26.65728 -26.11218 -24.99309 -24.41132 -22.26594 -21.86132 -20.84118 -19.78553 -19.55569 -19.15711 -18.49388 -18.19131 -17.66115 -17.01905 -16.88234 -16.76987 -16.48174 -16.25390 -16.02117 -15.72003 -15.55722 -15.38102 -15.15493 -15.00370 -14.59252 -14.52518 -14.27467 -14.09486 -14.07152 -13.30161 -12.94281 -12.67949 -12.64997 -12.43426 -12.41848 -12.24101 -12.02849 -11.92586 -11.91530 -11.69076 -11.67644 -11.36615 -11.18081 -11.13180 -10.78158 -10.58435 -10.25277 -8.92291 -8.17075 -5.53254 -0.97315 -0.61283 1.40553 1.54635 1.60669 1.63368 1.81060 1.90413 2.40072 2.55721 2.65238 2.89210 3.02412 3.15001 3.26571 3.47756 3.57446 3.60913 3.75589 3.79593 3.99803 4.02068 4.11619 4.25172 4.33580 4.40996 4.47894 4.55699 4.76506 4.86435 4.89251 4.92975 5.05025 5.13913 5.23509 5.32723 5.36379 5.38722 5.45147 5.55024 5.87251 6.23917 6.38509 6.54475 6.91599 7.06676 7.74907 8.17763 8.91155 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.002731 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.964549 B =10251.568388 C =11320.241703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.061 4.061 3 Si 1.104 2.896 4 H -0.285 1.285 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.357 4.357 8 H 0.028 0.972 9 N -0.595 5.595 10 C 0.137 3.863 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.105 4.105 14 C 0.144 3.856 15 H 0.056 0.944 16 N -0.686 5.686 17 C 0.558 3.442 18 O -0.560 6.560 19 C 0.137 3.863 20 C -0.150 4.150 21 C 0.104 3.896 22 C 0.329 3.671 23 F -0.197 7.197 24 F -0.196 7.196 25 N -0.475 5.475 26 C 0.306 3.694 27 N -0.481 5.481 28 C 0.133 3.867 29 H 0.256 0.744 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.422 0.578 39 H 0.156 0.844 40 H 0.182 0.818 41 H 0.258 0.742 42 H 0.043 0.957 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 -25.236 0.723 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.260 4.260 3 Si 0.929 3.071 4 H -0.211 1.211 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.487 4.487 8 H 0.046 0.954 9 N -0.318 5.318 10 C 0.010 3.990 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.143 4.143 14 C 0.040 3.960 15 H 0.074 0.926 16 N -0.338 5.338 17 C 0.342 3.658 18 O -0.437 6.437 19 C -0.012 4.012 20 C -0.173 4.173 21 C -0.046 4.046 22 C 0.275 3.725 23 F -0.178 7.178 24 F -0.177 7.177 25 N -0.189 5.189 26 C 0.019 3.981 27 N -0.198 5.198 28 C 0.009 3.991 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.260 0.740 39 H 0.174 0.826 40 H 0.199 0.801 41 H 0.274 0.726 42 H 0.061 0.939 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.375 -23.586 0.843 24.727 hybrid contribution 0.553 -0.582 -0.639 1.026 sum 7.928 -24.168 0.204 25.436 Atomic orbital electron populations 1.70884 1.07497 1.29365 1.48219 1.27034 0.96372 1.04416 0.98136 0.83007 0.74188 0.72724 0.77198 1.21055 1.20762 1.20665 1.19906 0.98602 0.90821 1.39343 0.95443 1.43912 1.58799 1.01212 1.27860 1.20450 0.92321 1.00001 0.86260 1.22628 0.98607 0.97894 0.98160 1.21263 0.97724 0.94747 1.00283 1.21266 1.01812 0.99167 0.92049 1.20664 0.99367 0.81227 0.94785 0.92580 1.46110 1.31887 1.12158 1.43653 1.18156 0.81290 0.86597 0.79776 1.90853 1.50101 1.42750 1.59982 1.21424 0.92421 0.93395 0.93946 1.22799 0.98242 0.99857 0.96419 1.22360 0.96530 0.89423 0.96310 1.20517 0.76784 0.98072 0.77150 1.93059 1.94941 1.79978 1.49841 1.93056 1.45162 1.94385 1.85086 1.68090 1.04738 1.34498 1.11594 1.26041 0.91261 0.93629 0.87166 1.68404 1.26626 1.00483 1.24262 1.20673 0.96946 0.86507 0.95008 0.93365 0.94525 0.94572 0.90177 0.94936 0.90192 0.94597 0.90050 0.88248 0.73958 0.82646 0.80082 0.72614 0.93865 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.93 12.19 21.65 0.26 -55.67 16 2 C -0.06 -3.54 4.82 84.86 0.41 -3.13 16 3 Si 1.10 52.70 30.00 68.60 2.06 54.76 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.36 -20.84 9.43 84.03 0.79 -20.04 16 8 H 0.03 1.71 7.97 -2.91 -0.02 1.69 16 9 N -0.59 -30.03 2.37 -708.86 -1.68 -31.71 16 10 C 0.14 6.22 4.45 87.42 0.39 6.61 16 11 C -0.13 -4.93 6.40 31.70 0.20 -4.73 16 12 C -0.10 -3.27 5.65 30.30 0.17 -3.10 16 13 C -0.11 -2.93 5.25 29.51 0.16 -2.78 16 14 C 0.14 5.06 2.01 42.75 0.09 5.15 16 15 H 0.06 2.40 6.22 -2.39 -0.01 2.39 16 16 N -0.69 -19.46 4.87 -455.61 -2.22 -21.68 16 17 C 0.56 17.76 7.74 86.96 0.67 18.43 16 18 O -0.56 -22.99 15.96 -3.65 -0.06 -23.05 16 19 C 0.14 3.37 6.79 41.99 0.29 3.65 16 20 C -0.15 -3.47 9.32 22.71 0.21 -3.26 16 21 C 0.10 1.83 6.31 42.63 0.27 2.10 16 22 C 0.33 4.49 5.58 71.24 0.40 4.89 16 23 F -0.20 -3.55 17.27 44.97 0.78 -2.77 16 24 F -0.20 -3.38 17.27 44.97 0.78 -2.60 16 25 N -0.47 -6.95 10.35 -188.12 -1.95 -8.90 16 26 C 0.31 3.89 12.27 180.92 2.22 6.12 16 27 N -0.48 -8.94 9.70 -189.16 -1.84 -10.78 16 28 C 0.13 5.76 5.54 83.58 0.46 6.22 16 29 H 0.26 15.82 7.23 -92.71 -0.67 15.15 16 30 H 0.04 1.97 5.13 -2.39 -0.01 1.95 16 31 H 0.04 1.48 6.89 -2.39 -0.02 1.46 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.37 6.82 -2.39 -0.02 1.35 16 36 H 0.08 2.21 6.28 -2.39 -0.01 2.20 16 37 H 0.10 2.09 8.03 -2.39 -0.02 2.07 16 38 H 0.42 9.15 8.00 -92.71 -0.74 8.41 16 39 H 0.16 3.91 7.74 -2.91 -0.02 3.88 16 40 H 0.18 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.26 0.72 8.06 -2.91 -0.02 0.69 16 42 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 43 H 0.03 1.51 7.92 -2.39 -0.02 1.49 16 Total: -1.00 -75.35 359.83 3.30 -72.05 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.43 Total: 14.22 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.73 Total: 16.13 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -7.41 Total: -128.74 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 1.55 Total: -5.37 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.06 Total: 54.76 kcal Total: -75.35 3.30 -72.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034274677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds