Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30415 * 125.97421 * 2 1 4 4 N 1.39920 * 108.95611 * 179.97438 * 3 2 1 5 5 C 1.46502 * 125.74789 * 180.02562 * 4 3 2 6 6 C 1.34345 * 108.50296 * 359.72542 * 4 3 2 7 7 Cl 1.73607 * 126.31836 * 180.26035 * 6 4 3 8 8 C 1.38273 * 107.36178 * 0.43142 * 6 4 3 9 9 C 1.47305 * 126.43537 * 179.83741 * 8 6 4 10 10 O 1.21622 * 119.99249 * 269.68643 * 9 8 6 11 11 N 1.34766 * 120.00176 * 89.68584 * 9 8 6 12 12 C 1.46929 * 120.63348 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77486 * 233.63046 * 12 11 9 14 14 C 1.53035 * 109.30995 * 305.36045 * 13 12 11 15 15 H 1.09004 * 109.45792 * 181.38956 * 14 13 12 16 16 N 1.46498 * 109.46284 * 301.34321 * 14 13 12 17 17 C 1.36938 * 120.00234 * 275.00456 * 16 14 13 18 18 H 1.08001 * 119.99703 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99951 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99908 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46863 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47029 * 119.99682 * 21 19 17 24 24 H 1.48492 * 109.47229 * 239.99978 * 21 19 17 25 25 C 1.53042 * 109.54021 * 61.36728 * 14 13 12 26 26 H 1.09006 * 109.49541 * 58.58370 * 25 14 13 27 27 C 1.52994 * 109.49646 * 178.67720 * 25 14 13 28 28 C 1.46924 * 120.63242 * 180.02562 * 11 9 8 29 29 H 1.08991 * 109.47260 * 270.02761 * 1 2 3 30 30 H 1.08997 * 109.46566 * 30.03463 * 1 2 3 31 31 H 1.09004 * 109.46607 * 150.02256 * 1 2 3 32 32 H 1.08997 * 109.47555 * 89.97424 * 5 4 3 33 33 H 1.09002 * 109.47358 * 209.97290 * 5 4 3 34 34 H 1.09007 * 109.47015 * 329.97263 * 5 4 3 35 35 H 1.08998 * 109.59209 * 113.83860 * 12 11 9 36 36 H 1.09003 * 109.58217 * 353.41142 * 12 11 9 37 37 H 1.09001 * 109.49651 * 65.31212 * 13 12 11 38 38 H 1.09001 * 109.49244 * 185.40784 * 13 12 11 39 39 H 0.97003 * 119.99548 * 95.00108 * 16 14 13 40 40 H 0.97003 * 119.99867 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47178 * 60.00867 * 27 25 14 42 42 H 1.09004 * 109.46673 * 179.97438 * 27 25 14 43 43 H 1.08992 * 109.48072 * 299.99991 * 27 25 14 44 44 H 1.08999 * 109.58511 * 6.58326 * 28 11 9 45 45 H 1.08999 * 109.58969 * 246.15926 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 0.0006 5 6 4.7775 1.5324 0.0013 6 6 3.6459 -0.6971 0.0071 7 17 5.0709 -1.6887 0.0167 8 6 2.3373 -1.1438 0.0007 9 6 1.8922 -2.5480 0.0009 10 8 1.7089 -3.1279 -1.0523 11 7 1.6882 -3.1900 1.1681 12 6 1.9049 -2.5026 2.4485 13 6 2.8647 -3.3389 3.3008 14 6 2.3139 -4.7603 3.4360 15 1 2.9825 -5.3507 4.0625 16 7 0.9850 -4.7125 4.0507 17 6 0.8621 -4.6759 5.4140 18 1 1.7449 -4.6827 6.0361 19 6 -0.3971 -4.6300 5.9964 20 7 -1.4730 -4.6212 5.2381 21 14 -0.5648 -4.5808 7.8562 22 1 0.7847 -4.5992 8.4755 23 1 -1.2756 -3.3399 8.2564 24 1 -1.3368 -5.7634 8.3150 25 6 2.2122 -5.4036 2.0511 26 1 3.1966 -5.4171 1.5830 27 6 1.6927 -6.8359 2.1903 28 6 1.2448 -4.5906 1.1846 29 1 -0.3633 0.0005 1.0276 30 1 -0.3632 0.8897 -0.5144 31 1 -0.3633 -0.8902 -0.5135 32 1 5.0660 1.7524 1.0291 33 1 5.6057 1.0435 -0.5118 34 1 4.5286 2.4607 -0.5129 35 1 0.9541 -2.3929 2.9700 36 1 2.3398 -1.5198 2.2665 37 1 3.8428 -3.3718 2.8210 38 1 2.9588 -2.8896 4.2895 39 1 0.1921 -4.7067 3.4918 40 1 -2.3529 -4.5895 5.6451 41 1 0.7077 -6.8214 2.6570 42 1 1.6200 -7.2935 1.2036 43 1 2.3795 -7.4132 2.8092 44 1 1.2440 -4.9856 0.1687 45 1 0.2402 -4.6510 1.6031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036119101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = 48.622774 kcal Electronic energy + Delta-G solvation = -28767.289673 eV Core-core repulsion = 24847.771583 eV Total energy + Delta-G solvation = -3919.518090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65755 -39.63758 -37.52475 -37.19214 -34.37285 -34.09973 -32.79727 -31.37325 -30.60445 -29.64867 -29.12885 -26.76914 -25.77258 -24.77765 -23.46861 -22.17419 -21.60931 -20.61863 -19.50288 -18.30424 -17.42095 -17.28369 -16.59340 -15.95949 -15.61493 -15.30826 -14.74677 -14.33460 -14.19525 -13.92798 -13.75612 -13.63558 -13.40150 -13.23825 -12.97057 -12.83561 -12.66227 -12.50474 -12.44500 -12.15460 -11.94078 -11.89875 -11.53660 -11.34607 -11.14705 -10.91793 -10.90626 -10.76193 -10.46066 -10.41547 -10.15267 -9.81452 -9.70120 -9.53254 -9.43598 -8.93842 -8.69586 -8.17377 -6.96105 -5.78411 -3.06387 1.11016 1.26805 2.20732 2.28784 2.74663 3.39852 3.41436 3.47805 3.49598 4.10651 4.58031 4.59439 4.77512 4.86415 4.92998 5.04472 5.21654 5.27015 5.37037 5.41372 5.57640 5.58656 5.63049 5.67476 5.74811 5.78467 5.86368 5.97089 6.10155 6.13763 6.20243 6.28628 6.35631 6.36544 6.45406 6.53465 6.67645 6.72430 6.79903 6.96706 7.04488 7.27438 7.69952 7.75135 8.40246 8.43010 9.52093 10.09031 10.44370 11.44043 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.003717 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.000310 B = 7531.373387 C = 8003.600106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.122 3.878 3 N -0.274 5.274 4 N -0.356 5.356 5 C 0.094 3.906 6 C 0.154 3.846 7 Cl 0.011 6.989 8 C -0.243 4.243 9 C 0.594 3.406 10 O -0.543 6.543 11 N -0.588 5.588 12 C 0.120 3.880 13 C -0.148 4.148 14 C 0.179 3.821 15 H 0.050 0.950 16 N -0.718 5.718 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.902 3.098 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.108 4.108 26 H 0.065 0.935 27 C -0.137 4.137 28 C 0.119 3.881 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.000 9.484 -11.268 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 N -0.098 5.098 4 N -0.138 5.138 5 C -0.047 4.047 6 C -0.003 4.003 7 Cl 0.039 6.961 8 C -0.259 4.259 9 C 0.380 3.620 10 O -0.421 6.421 11 N -0.319 5.319 12 C -0.002 4.002 13 C -0.189 4.189 14 C 0.069 3.931 15 H 0.068 0.932 16 N -0.360 5.360 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.734 3.266 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.128 4.128 26 H 0.084 0.916 27 C -0.195 4.195 28 C -0.003 4.003 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.215 10.441 -11.622 19.831 hybrid contribution 0.039 -0.698 1.078 1.285 sum 12.254 9.742 -10.544 18.875 Atomic orbital electron populations 1.20338 0.85200 1.04090 1.04185 1.22323 0.97241 0.88234 0.96635 1.77264 0.84709 1.21513 1.26297 1.48311 1.06618 1.02584 1.56326 1.22040 0.83833 0.94495 1.04294 1.21876 0.89809 0.84105 1.04463 1.98433 1.35398 1.65594 1.96691 1.19786 0.90272 0.95539 1.20279 1.17113 0.77208 0.84060 0.83635 1.90756 1.52667 1.67508 1.31152 1.48042 1.65114 1.12931 1.05778 1.21642 1.01316 0.94424 0.82856 1.22512 0.97037 0.99975 0.99412 1.20207 0.89336 0.92267 0.91297 0.93191 1.42476 1.01283 1.88286 1.04002 1.19256 0.92106 1.42303 0.83015 0.91275 1.24681 0.95494 1.03136 0.97395 1.69658 0.97035 1.57810 1.33477 0.86192 0.77348 0.77132 0.85944 1.20702 1.22024 1.21999 1.21706 0.98566 0.95610 0.96914 0.91635 1.21661 1.02840 0.94586 1.00375 1.21693 0.98263 0.79390 1.00939 0.89254 0.90091 0.89747 0.89793 0.89152 0.88337 0.89690 0.91780 0.93404 0.90921 0.78068 0.93614 0.91014 0.93757 0.92861 0.89672 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.28 36.01 0.37 -0.57 16 2 C 0.12 1.72 7.26 -82.01 -0.60 1.12 16 3 N -0.27 -3.73 12.49 33.90 0.42 -3.31 16 4 N -0.36 -4.23 3.98 -64.31 -0.26 -4.49 16 5 C 0.09 0.65 11.28 59.85 0.67 1.33 16 6 C 0.15 2.06 7.41 -16.44 -0.12 1.93 16 7 Cl 0.01 0.13 28.57 -51.86 -1.48 -1.36 16 8 C -0.24 -3.70 3.87 -105.02 -0.41 -4.11 16 9 C 0.59 10.16 7.08 -12.58 -0.09 10.08 16 10 O -0.54 -10.73 16.52 5.26 0.09 -10.65 16 11 N -0.59 -9.78 2.97 -174.06 -0.52 -10.30 16 12 C 0.12 1.99 6.08 -3.71 -0.02 1.97 16 13 C -0.15 -2.48 5.78 -26.61 -0.15 -2.64 16 14 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -16.24 3.64 -53.39 -0.19 -16.44 16 17 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 21 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C -0.11 -1.76 2.67 -90.49 -0.24 -2.01 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.14 -2.18 9.05 37.15 0.34 -1.84 16 28 C 0.12 2.02 5.42 -3.70 -0.02 2.00 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.03 8.01 -51.93 -0.42 0.61 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.48 7.78 -51.93 -0.40 0.08 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 36 H 0.06 1.00 6.24 -51.93 -0.32 0.68 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.38 9.30 5.92 -40.82 -0.24 9.06 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 45 H 0.08 1.43 6.64 -51.93 -0.34 1.08 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -31.22 380.62 -7.85 -39.07 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.66 Total: 7.28 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.69 Total: 3.81 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.18 Total: -60.49 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.48 Total: -1.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.22 -7.85 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.693 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds