Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30415 * 125.97421 * 2 1 4 4 N 1.39920 * 108.95611 * 179.97438 * 3 2 1 5 5 C 1.46502 * 125.74789 * 180.02562 * 4 3 2 6 6 C 1.34345 * 108.50296 * 359.72542 * 4 3 2 7 7 Cl 1.73607 * 126.31836 * 180.26035 * 6 4 3 8 8 C 1.38273 * 107.36178 * 0.43142 * 6 4 3 9 9 C 1.47305 * 126.43537 * 179.83741 * 8 6 4 10 10 O 1.21622 * 119.99249 * 269.68643 * 9 8 6 11 11 N 1.34766 * 120.00176 * 89.68584 * 9 8 6 12 12 C 1.46929 * 120.63348 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77486 * 233.63046 * 12 11 9 14 14 C 1.53035 * 109.30995 * 305.36045 * 13 12 11 15 15 H 1.09004 * 109.45792 * 181.38956 * 14 13 12 16 16 N 1.46498 * 109.46284 * 301.34321 * 14 13 12 17 17 C 1.36938 * 120.00234 * 275.00456 * 16 14 13 18 18 H 1.08001 * 119.99703 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99951 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99908 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46863 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47029 * 119.99682 * 21 19 17 24 24 H 1.48492 * 109.47229 * 239.99978 * 21 19 17 25 25 C 1.53042 * 109.54021 * 61.36728 * 14 13 12 26 26 H 1.09006 * 109.49541 * 58.58370 * 25 14 13 27 27 C 1.52994 * 109.49646 * 178.67720 * 25 14 13 28 28 C 1.46924 * 120.63242 * 180.02562 * 11 9 8 29 29 H 1.08991 * 109.47260 * 270.02761 * 1 2 3 30 30 H 1.08997 * 109.46566 * 30.03463 * 1 2 3 31 31 H 1.09004 * 109.46607 * 150.02256 * 1 2 3 32 32 H 1.08997 * 109.47555 * 89.97424 * 5 4 3 33 33 H 1.09002 * 109.47358 * 209.97290 * 5 4 3 34 34 H 1.09007 * 109.47015 * 329.97263 * 5 4 3 35 35 H 1.08998 * 109.59209 * 113.83860 * 12 11 9 36 36 H 1.09003 * 109.58217 * 353.41142 * 12 11 9 37 37 H 1.09001 * 109.49651 * 65.31212 * 13 12 11 38 38 H 1.09001 * 109.49244 * 185.40784 * 13 12 11 39 39 H 0.97003 * 119.99548 * 95.00108 * 16 14 13 40 40 H 0.97003 * 119.99867 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47178 * 60.00867 * 27 25 14 42 42 H 1.09004 * 109.46673 * 179.97438 * 27 25 14 43 43 H 1.08992 * 109.48072 * 299.99991 * 27 25 14 44 44 H 1.08999 * 109.58511 * 6.58326 * 28 11 9 45 45 H 1.08999 * 109.58969 * 246.15926 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 0.0006 5 6 4.7775 1.5324 0.0013 6 6 3.6459 -0.6971 0.0071 7 17 5.0709 -1.6887 0.0167 8 6 2.3373 -1.1438 0.0007 9 6 1.8922 -2.5480 0.0009 10 8 1.7089 -3.1279 -1.0523 11 7 1.6882 -3.1900 1.1681 12 6 1.9049 -2.5026 2.4485 13 6 2.8647 -3.3389 3.3008 14 6 2.3139 -4.7603 3.4360 15 1 2.9825 -5.3507 4.0625 16 7 0.9850 -4.7125 4.0507 17 6 0.8621 -4.6759 5.4140 18 1 1.7449 -4.6827 6.0361 19 6 -0.3971 -4.6300 5.9964 20 7 -1.4730 -4.6212 5.2381 21 14 -0.5648 -4.5808 7.8562 22 1 0.7847 -4.5992 8.4755 23 1 -1.2756 -3.3399 8.2564 24 1 -1.3368 -5.7634 8.3150 25 6 2.2122 -5.4036 2.0511 26 1 3.1966 -5.4171 1.5830 27 6 1.6927 -6.8359 2.1903 28 6 1.2448 -4.5906 1.1846 29 1 -0.3633 0.0005 1.0276 30 1 -0.3632 0.8897 -0.5144 31 1 -0.3633 -0.8902 -0.5135 32 1 5.0660 1.7524 1.0291 33 1 5.6057 1.0435 -0.5118 34 1 4.5286 2.4607 -0.5129 35 1 0.9541 -2.3929 2.9700 36 1 2.3398 -1.5198 2.2665 37 1 3.8428 -3.3718 2.8210 38 1 2.9588 -2.8896 4.2895 39 1 0.1921 -4.7067 3.4918 40 1 -2.3529 -4.5895 5.6451 41 1 0.7077 -6.8214 2.6570 42 1 1.6200 -7.2935 1.2036 43 1 2.3795 -7.4132 2.8092 44 1 1.2440 -4.9856 0.1687 45 1 0.2402 -4.6510 1.6031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 30.108004 kcal Electronic energy + Delta-G solvation = -28768.092534 eV Core-core repulsion = 24847.771583 eV Total energy + Delta-G solvation = -3920.320951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68767 -40.99663 -38.98086 -38.15533 -35.82837 -35.20375 -34.38604 -32.97480 -31.63858 -30.89238 -30.51419 -27.93802 -27.01274 -26.14408 -25.25717 -23.26871 -23.03285 -21.67901 -20.70320 -19.71046 -19.21902 -18.56263 -17.75286 -17.00033 -16.77761 -16.66231 -16.30599 -15.88323 -15.63291 -15.43607 -14.85760 -14.82829 -14.51501 -14.50949 -14.24684 -14.05418 -13.70960 -13.63246 -13.55821 -13.30222 -12.97939 -12.93975 -12.86696 -12.85597 -12.79517 -12.64272 -12.39456 -12.03639 -11.95989 -11.94462 -11.84553 -11.54654 -11.14333 -11.05052 -10.83488 -10.37827 -9.76145 -9.60123 -8.88017 -7.84834 -5.10459 0.12753 0.26198 1.13507 1.43119 1.44517 1.50675 1.52559 1.60430 2.09100 2.62644 3.15853 3.49117 3.66454 3.69688 3.90771 3.94508 4.07669 4.13280 4.15820 4.20642 4.30917 4.34271 4.42875 4.57505 4.58038 4.65070 4.66591 4.71310 4.75741 4.84995 4.89331 4.98131 5.06860 5.17254 5.22207 5.27087 5.30408 5.33873 5.48434 5.51851 5.63426 5.67308 6.26914 6.37126 6.40268 7.08445 7.45102 8.21081 8.45191 9.38490 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.003717 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.000310 B = 7531.373387 C = 8003.600106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.113 3.887 3 N -0.284 5.284 4 N -0.347 5.347 5 C 0.080 3.920 6 C 0.157 3.843 7 Cl 0.027 6.973 8 C -0.275 4.275 9 C 0.600 3.400 10 O -0.573 6.573 11 N -0.585 5.585 12 C 0.133 3.867 13 C -0.139 4.139 14 C 0.175 3.825 15 H 0.049 0.951 16 N -0.723 5.723 17 C -0.224 4.224 18 H 0.074 0.926 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.299 1.299 24 H -0.300 1.300 25 C -0.098 4.098 26 H 0.085 0.915 27 C -0.131 4.131 28 C 0.123 3.877 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.375 0.625 40 H 0.247 0.753 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.491 10.404 -11.449 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 N -0.108 5.108 4 N -0.128 5.128 5 C -0.058 4.058 6 C -0.001 4.001 7 Cl 0.055 6.945 8 C -0.291 4.291 9 C 0.388 3.612 10 O -0.453 6.453 11 N -0.316 5.316 12 C 0.010 3.990 13 C -0.180 4.180 14 C 0.066 3.934 15 H 0.067 0.933 16 N -0.364 5.364 17 C -0.356 4.356 18 H 0.092 0.908 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.227 1.227 24 H -0.228 1.228 25 C -0.118 4.118 26 H 0.104 0.896 27 C -0.188 4.188 28 C 0.001 3.999 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.208 0.792 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.772 11.386 -11.797 22.069 hybrid contribution -0.591 -0.956 1.069 1.551 sum 14.181 10.430 -10.728 20.615 Atomic orbital electron populations 1.20369 0.84379 1.04535 1.04399 1.22561 0.98032 0.88017 0.96687 1.77226 0.85563 1.21400 1.26611 1.48711 1.07114 1.02613 1.54389 1.22515 0.82682 0.94611 1.06022 1.21921 0.89798 0.84912 1.03498 1.98437 1.34231 1.65290 1.96556 1.19701 0.91582 0.94623 1.23210 1.17332 0.76272 0.84672 0.82964 1.90730 1.54025 1.68494 1.32096 1.48038 1.64891 1.12768 1.05862 1.21449 0.99880 0.95150 0.82500 1.22383 0.97972 0.98338 0.99305 1.20412 0.87273 0.93540 0.92203 0.93296 1.42576 1.02678 1.88096 1.03058 1.19582 0.91976 1.39579 0.84480 0.90789 1.25320 0.95536 1.04563 1.00807 1.69802 0.97087 1.60179 1.34716 0.85270 0.77474 0.76201 0.82002 1.19273 1.22714 1.22824 1.21632 0.99290 0.95423 0.95416 0.89650 1.21592 1.01177 0.94609 1.01466 1.21592 0.97482 0.79923 1.00918 0.89109 0.88189 0.90738 0.88033 0.87289 0.86748 0.92596 0.90413 0.90993 0.91648 0.79180 0.94433 0.94005 0.91630 0.92179 0.89494 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.28 71.24 0.73 -1.10 16 2 C 0.11 3.09 7.26 43.53 0.32 3.40 16 3 N -0.28 -7.27 12.49 -46.66 -0.58 -7.85 16 4 N -0.35 -7.43 3.98 -357.39 -1.42 -8.85 16 5 C 0.08 0.87 11.28 127.77 1.44 2.31 16 6 C 0.16 3.89 7.41 84.32 0.62 4.52 16 7 Cl 0.03 0.56 28.57 -2.72 -0.08 0.48 16 8 C -0.27 -8.11 3.87 -20.12 -0.08 -8.19 16 9 C 0.60 20.26 7.08 86.63 0.61 20.88 16 10 O -0.57 -22.60 16.52 -4.10 -0.07 -22.67 16 11 N -0.59 -19.25 2.97 -822.86 -2.45 -21.70 16 12 C 0.13 4.33 6.08 86.36 0.53 4.86 16 13 C -0.14 -4.44 5.78 30.67 0.18 -4.27 16 14 C 0.17 6.26 2.53 45.02 0.11 6.38 16 15 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 16 N -0.72 -32.90 3.64 -322.82 -1.18 -34.07 16 17 C -0.22 -11.52 9.93 84.03 0.83 -10.68 16 18 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.97 -56.74 13.06 21.65 0.28 -56.45 16 21 Si 0.96 44.80 29.55 68.60 2.03 46.83 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 C -0.10 -3.07 2.67 -10.71 -0.03 -3.10 16 26 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 27 C -0.13 -4.03 9.05 71.98 0.65 -3.37 16 28 C 0.12 4.16 5.42 86.37 0.47 4.63 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.86 8.01 -2.38 -0.02 1.84 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.79 7.78 -2.39 -0.02 0.77 16 34 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.06 2.17 7.74 -2.39 -0.02 2.16 16 36 H 0.08 2.34 6.24 -2.39 -0.01 2.33 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.37 18.63 5.92 -92.71 -0.55 18.08 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.04 1.54 7.54 -2.39 -0.02 1.52 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.92 7.00 -2.39 -0.02 2.90 16 45 H 0.06 2.16 6.64 -2.39 -0.02 2.14 16 Total: -1.00 -67.12 380.62 3.86 -63.26 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.46 Total: 28.13 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.86 Total: 12.90 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -5.34 Total: -128.93 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.67 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -0.08 Total: 0.48 kcal Total: -67.12 3.86 -63.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.367 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds