Wall clock time and date at job start Sat Apr 11 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48499 * 109.47115 * 274.98673 * 3 2 1 5 5 H 1.48497 * 109.47411 * 34.98995 * 3 2 1 6 6 H 1.48506 * 109.46821 * 154.98675 * 3 2 1 7 7 C 1.38805 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00064 * 183.94742 * 7 2 1 9 9 N 1.36937 * 120.00348 * 3.94153 * 7 2 1 10 10 C 1.46867 * 125.33431 * 349.87020 * 9 7 2 11 11 C 1.54474 * 106.65525 * 195.40499 * 10 9 7 12 12 C 1.53381 * 102.53747 * 332.25526 * 11 10 9 13 13 H 1.08995 * 105.69070 * 278.46535 * 12 11 10 14 14 C 1.49275 * 114.29219 * 161.96726 * 12 11 10 15 15 N 1.45650 * 114.67934 * 259.01372 * 14 12 11 16 16 C 1.34774 * 120.30382 * 143.50275 * 15 14 12 17 17 O 1.21623 * 120.00001 * 350.46256 * 16 15 14 18 18 C 1.47164 * 119.99799 * 170.46032 * 16 15 14 19 19 C 1.38408 * 126.88409 * 331.53345 * 18 16 15 20 20 C 1.39674 * 105.35625 * 179.91346 * 19 18 16 21 21 N 1.30864 * 107.86158 * 0.36185 * 20 19 18 22 22 N 1.28444 * 110.92853 * 359.76782 * 21 20 19 23 23 C 1.46495 * 125.19047 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47570 * 125.73972 * 23 22 21 25 25 F 1.39901 * 109.47322 * 245.74240 * 23 22 21 26 26 C 1.46831 * 119.38998 * 323.52810 * 15 14 12 27 27 C 1.52957 * 107.39235 * 55.01683 * 26 15 14 28 28 C 1.48010 * 125.33719 * 169.55893 * 9 7 2 29 29 H 1.08995 * 110.21423 * 303.19677 * 28 9 7 30 30 H 0.97002 * 119.99470 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.02342 * 314.70399 * 10 9 7 32 32 H 1.08997 * 110.02672 * 76.10275 * 10 9 7 33 33 H 1.08996 * 110.79655 * 90.52084 * 11 10 9 34 34 H 1.09004 * 110.79001 * 214.00014 * 11 10 9 35 35 H 1.09000 * 108.44268 * 20.35961 * 14 12 11 36 36 H 1.09001 * 108.44014 * 137.66492 * 14 12 11 37 37 H 1.07993 * 127.31984 * 0.04179 * 19 18 16 38 38 H 1.08002 * 126.06541 * 180.08808 * 20 19 18 39 39 H 1.09007 * 109.47313 * 5.73962 * 23 22 21 40 40 H 1.08995 * 109.87118 * 174.49002 * 26 15 14 41 41 H 1.09000 * 109.86969 * 295.47229 * 26 15 14 42 42 H 1.09003 * 109.39030 * 58.68200 * 27 26 15 43 43 H 1.08998 * 109.38637 * 178.46973 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0883 -1.2032 0.0649 9 7 1.3280 -2.3867 -0.0804 10 6 -0.1279 -2.5382 0.0387 11 6 -0.3987 -4.0402 0.2776 12 6 0.7989 -4.7078 -0.4099 13 1 0.5486 -4.7421 -1.4702 14 6 1.0385 -6.1203 0.0092 15 7 2.1128 -6.2935 0.9774 16 6 2.0089 -7.2209 1.9498 17 8 0.9528 -7.7961 2.1312 18 6 3.1735 -7.5375 2.7920 19 6 4.5074 -7.4386 2.4363 20 6 5.2224 -7.8447 3.5653 21 7 4.3580 -8.1607 4.4956 22 7 3.1544 -7.9936 4.0794 23 6 1.9456 -8.2534 4.8652 24 9 1.1417 -7.1084 4.8767 25 9 1.2367 -9.3152 4.2932 26 6 3.3096 -5.4480 0.8846 27 6 2.8430 -3.9914 0.9034 28 6 1.9417 -3.7141 -0.3083 29 1 2.5204 -3.7080 -1.2319 30 1 -0.4849 0.8401 -0.0004 31 1 -0.4962 -1.9539 0.8820 32 1 -0.6136 -2.2132 -0.8813 33 1 -0.4086 -4.2668 1.3437 34 1 -1.3338 -4.3443 -0.1926 35 1 0.1181 -6.5126 0.4416 36 1 1.2758 -6.7076 -0.8779 37 1 4.9098 -7.1141 1.4881 38 1 6.2977 -7.8939 3.6532 39 1 2.2248 -8.5115 5.8868 40 1 3.9645 -5.6383 1.7349 41 1 3.8394 -5.6565 -0.0448 42 1 2.2869 -3.8014 1.8215 43 1 3.7107 -3.3330 0.8633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036725712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:44 Heat of formation + Delta-G solvation = 2.130386 kcal Electronic energy + Delta-G solvation = -31107.308069 eV Core-core repulsion = 26633.977237 eV Total energy + Delta-G solvation = -4473.330832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.47537 -47.57237 -42.86065 -40.14957 -38.20501 -35.57457 -33.25606 -32.85671 -31.72217 -31.33065 -29.51407 -28.17915 -26.62031 -25.41843 -24.11373 -23.01445 -22.41506 -22.00548 -20.47767 -20.20699 -18.51534 -18.09251 -17.81859 -17.70420 -16.97610 -16.88379 -16.01997 -15.82333 -15.07188 -14.97873 -14.79331 -14.53002 -14.30404 -14.20412 -13.87640 -13.82957 -13.65203 -13.46218 -13.07510 -13.01807 -12.61075 -12.32243 -12.24907 -11.78935 -11.61857 -11.34239 -11.22993 -11.03219 -10.84939 -10.77125 -10.26401 -10.12055 -9.99216 -9.90750 -9.85517 -9.67553 -9.55675 -9.29068 -8.63989 -8.50955 -6.82144 -5.74184 -3.09274 0.88916 1.46554 2.21005 2.72469 2.99725 3.29761 3.37757 3.42780 3.45177 3.75349 4.14682 4.33598 4.45804 4.55198 4.77479 4.94170 5.08120 5.11297 5.23154 5.29333 5.34777 5.40235 5.51293 5.58478 5.83177 5.86510 5.95048 5.98042 6.01932 6.10366 6.21725 6.26446 6.33792 6.54863 6.62085 6.69241 6.85753 7.04630 7.30232 7.51985 7.57032 7.61741 7.81928 7.99403 8.26421 9.19865 9.80020 10.46608 11.36800 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003313 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.036232 B = 8450.788432 C = 8887.230215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.175 3.825 11 C -0.137 4.137 12 C -0.108 4.108 13 H 0.067 0.933 14 C 0.137 3.863 15 N -0.581 5.581 16 C 0.580 3.420 17 O -0.529 6.529 18 C -0.005 4.005 19 C -0.182 4.182 20 C 0.024 3.976 21 N -0.271 5.271 22 N -0.331 5.331 23 C 0.500 3.500 24 F -0.168 7.168 25 F -0.165 7.165 26 C 0.089 3.911 27 C -0.139 4.139 28 C 0.173 3.827 29 H 0.043 0.957 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.174 0.826 38 H 0.197 0.803 39 H 0.168 0.832 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 -17.628 6.033 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.050 3.950 11 C -0.175 4.175 12 C -0.127 4.127 13 H 0.086 0.914 14 C 0.014 3.986 15 N -0.313 5.313 16 C 0.365 3.635 17 O -0.405 6.405 18 C -0.132 4.132 19 C -0.210 4.210 20 C -0.156 4.156 21 N -0.099 5.099 22 N -0.127 5.127 23 C 0.367 3.633 24 F -0.149 7.149 25 F -0.146 7.146 26 C -0.034 4.034 27 C -0.180 4.180 28 C 0.065 3.935 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.191 0.809 38 H 0.214 0.786 39 H 0.185 0.815 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.411 -18.086 7.288 20.860 hybrid contribution 0.447 1.357 -1.026 1.759 sum 7.858 -16.728 6.261 19.514 Atomic orbital electron populations 1.69977 1.04956 1.25032 1.56543 1.24859 0.95677 0.97690 1.01991 0.86142 0.78689 0.83705 0.77481 1.21628 1.21793 1.20621 1.18984 0.90702 0.82282 1.43628 0.90565 1.44686 1.02388 1.00971 1.84340 1.21190 0.84537 0.88728 1.00504 1.22693 0.95810 0.99484 0.99549 1.20732 0.97953 0.92941 1.01109 0.91417 1.20441 0.90792 0.96570 0.90758 1.47419 1.20135 1.34432 1.29309 1.16911 0.85718 0.80687 0.80144 1.90866 1.28067 1.52124 1.69481 1.21701 0.96715 1.06858 0.87886 1.22573 0.90313 1.06334 1.01796 1.23794 1.00030 1.01771 0.89957 1.73131 0.88451 1.20833 1.27507 1.46852 1.06308 1.49414 1.10143 1.21157 0.74448 0.74413 0.93286 1.93184 1.73581 1.51371 1.96783 1.93185 1.78484 1.55574 1.87340 1.22372 0.86657 0.91686 1.02686 1.22513 1.01093 0.92708 1.01638 1.20546 0.91977 0.86274 0.94664 0.93896 0.93748 0.91713 0.95480 0.92572 0.91998 0.89365 0.92177 0.80908 0.78633 0.81513 0.88918 0.90860 0.91427 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.35 55.49 0.57 -26.05 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.08 9.81 -15.06 -0.15 -6.23 16 8 H 0.08 1.95 7.67 -52.48 -0.40 1.55 16 9 N -0.60 -14.60 3.04 -163.71 -0.50 -15.10 16 10 C 0.18 4.21 5.39 -3.07 -0.02 4.20 16 11 C -0.14 -2.60 6.37 -25.76 -0.16 -2.77 16 12 C -0.11 -1.82 2.45 -92.88 -0.23 -2.05 16 13 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 14 C 0.14 2.02 6.01 -6.33 -0.04 1.98 16 15 N -0.58 -8.40 3.00 -177.70 -0.53 -8.93 16 16 C 0.58 9.00 7.22 -12.64 -0.09 8.90 16 17 O -0.53 -9.60 14.10 5.26 0.07 -9.53 16 18 C -0.01 -0.07 6.24 -82.06 -0.51 -0.59 16 19 C -0.18 -1.82 8.58 -38.98 -0.33 -2.15 16 20 C 0.02 0.22 12.03 -17.43 -0.21 0.01 16 21 N -0.27 -3.01 11.90 30.59 0.36 -2.65 16 22 N -0.33 -4.14 3.62 -62.39 -0.23 -4.36 16 23 C 0.50 5.61 5.69 59.84 0.34 5.95 16 24 F -0.17 -2.31 16.61 2.25 0.04 -2.28 16 25 F -0.16 -2.16 16.23 2.25 0.04 -2.12 16 26 C 0.09 1.13 5.19 -3.88 -0.02 1.11 16 27 C -0.14 -2.34 5.19 -26.47 -0.14 -2.48 16 28 C 0.17 3.30 3.43 -67.44 -0.23 3.07 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.76 6.98 -51.93 -0.36 1.40 16 32 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.40 6.72 -51.93 -0.35 1.05 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.17 1.30 6.62 -52.49 -0.35 0.95 16 38 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.17 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.05 4.39 -51.93 -0.23 0.82 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.22 7.96 -51.93 -0.41 0.80 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -33.53 348.44 -7.27 -40.81 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.45 Total: -0.39 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.89 Total: 8.70 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.32 Total: -57.10 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.07 Total: -4.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.53 -7.27 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036725712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.936 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds