Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48504 * 109.46834 * 269.99767 * 3 2 1 5 5 H 1.48495 * 109.46830 * 29.99904 * 3 2 1 6 6 H 1.48501 * 109.47073 * 150.00082 * 3 2 1 7 7 C 1.38819 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40644 * 359.97313 * 9 7 2 11 11 C 1.55290 * 107.04457 * 184.92222 * 10 9 7 12 12 C 1.53744 * 101.84212 * 22.48005 * 11 10 9 13 13 H 1.08999 * 111.30761 * 79.84396 * 12 11 10 14 14 C 1.52242 * 114.75093 * 207.23506 * 12 11 10 15 15 N 1.47715 * 106.36049 * 169.60026 * 14 12 11 16 16 C 1.34775 * 119.68322 * 127.94302 * 15 14 12 17 17 O 1.21623 * 120.00182 * 359.41428 * 16 15 14 18 18 C 1.47164 * 119.99716 * 179.41090 * 16 15 14 19 19 C 1.38406 * 126.88619 * 333.20850 * 18 16 15 20 20 C 1.39676 * 105.35894 * 180.02562 * 19 18 16 21 21 N 1.30863 * 107.86237 * 0.02562 * 20 19 18 22 22 N 1.28447 * 110.92737 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.18763 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47208 * 22.28953 * 23 22 21 25 25 F 1.39899 * 109.46994 * 142.29202 * 23 22 21 26 26 C 1.46595 * 120.63192 * 308.22329 * 15 14 12 27 27 C 1.53544 * 110.81951 * 47.45281 * 26 15 14 28 28 C 1.45470 * 126.40224 * 179.97438 * 9 7 2 29 29 H 1.08999 * 109.27180 * 266.20863 * 28 9 7 30 30 H 0.96997 * 119.99787 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.92255 * 65.57292 * 10 9 7 32 32 H 1.09003 * 110.08343 * 304.35984 * 10 9 7 33 33 H 1.08995 * 110.95529 * 264.34152 * 11 10 9 34 34 H 1.09003 * 110.95514 * 140.61496 * 11 10 9 35 35 H 1.09006 * 110.06766 * 50.39259 * 14 12 11 36 36 H 1.08997 * 110.06825 * 288.81768 * 14 12 11 37 37 H 1.07998 * 127.31945 * 359.97438 * 19 18 16 38 38 H 1.07997 * 126.06884 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46914 * 262.29062 * 23 22 21 40 40 H 1.08997 * 109.25928 * 167.82525 * 26 15 14 41 41 H 1.09004 * 109.25205 * 287.25681 * 26 15 14 42 42 H 1.08994 * 109.96593 * 189.67361 * 27 26 15 43 43 H 1.08998 * 109.77683 * 68.66973 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5534 0.0006 11 6 -0.4341 -4.0741 0.1279 12 6 0.8684 -4.5892 0.7620 13 1 0.8851 -4.4065 1.8364 14 6 1.2009 -6.0407 0.4452 15 7 2.5823 -6.2640 0.9185 16 6 2.8484 -7.3029 1.7347 17 8 1.9514 -8.0450 2.0867 18 6 4.2244 -7.5394 2.2000 19 6 5.3936 -7.1752 1.5549 20 6 6.4268 -7.6149 2.3856 21 7 5.8856 -8.1893 3.4296 22 7 4.6036 -8.1640 3.3540 23 6 3.6879 -8.7195 4.3536 24 9 4.3436 -8.8127 5.5860 25 9 2.5733 -7.8837 4.4804 26 6 3.6653 -5.3627 0.5138 27 6 3.2476 -3.8954 0.6868 28 6 1.9079 -3.7211 0.0005 29 1 1.9895 -4.0780 -1.0261 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5632 -2.1737 -0.9324 32 1 -0.5832 -2.0209 0.8457 33 1 -0.5951 -4.5238 -0.8518 34 1 -1.2855 -4.2564 0.7837 35 1 1.1415 -6.2120 -0.6297 36 1 0.5138 -6.7049 0.9695 37 1 5.4871 -6.6612 0.6097 38 1 7.4845 -7.5018 2.1991 39 1 3.3643 -9.7115 4.0384 40 1 4.5449 -5.5597 1.1266 41 1 3.9099 -5.5422 -0.5332 42 1 3.9876 -3.2409 0.2263 43 1 3.1542 -3.6610 1.7472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036725713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = 9.758428 kcal Electronic energy + Delta-G solvation = -30834.721599 eV Core-core repulsion = 26361.721544 eV Total energy + Delta-G solvation = -4473.000055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.59797 -47.69734 -42.91067 -40.18435 -38.26790 -35.67085 -33.23768 -32.81427 -31.71737 -31.44919 -29.51940 -28.08278 -26.66890 -25.25496 -24.16309 -22.84660 -22.20790 -21.84836 -20.58331 -20.04314 -19.51155 -18.50706 -17.92190 -17.63509 -17.01312 -16.29678 -16.11675 -15.83605 -15.40373 -14.98112 -14.79781 -14.52048 -14.44055 -14.15868 -13.98638 -13.87321 -13.65797 -13.58637 -13.18356 -12.93290 -12.66789 -12.55672 -12.36563 -11.74338 -11.55410 -11.47181 -11.16391 -10.86968 -10.80188 -10.76456 -10.33203 -10.15041 -10.03986 -9.92430 -9.82061 -9.68164 -9.56838 -9.29988 -8.68609 -8.65591 -6.87691 -5.74870 -3.08310 0.86632 1.40128 2.21589 2.67301 2.94503 3.22037 3.37421 3.42398 3.44560 3.66418 4.06246 4.11850 4.46046 4.59293 4.76052 4.93887 4.98247 5.05804 5.20865 5.26712 5.32124 5.46757 5.51760 5.54348 5.73408 5.81127 5.92394 5.94335 6.07856 6.09590 6.11590 6.16790 6.25404 6.39810 6.55673 6.58345 6.74055 7.00751 7.21707 7.51571 7.51916 7.57656 7.77801 7.91030 8.20767 9.15819 9.79483 10.47159 11.37631 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.003142 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.516569 B = 8910.513377 C = 9503.803074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.129 3.871 15 N -0.583 5.583 16 C 0.582 3.418 17 O -0.539 6.539 18 C -0.010 4.010 19 C -0.185 4.185 20 C 0.019 3.981 21 N -0.266 5.266 22 N -0.331 5.331 23 C 0.507 3.493 24 F -0.170 7.170 25 F -0.160 7.160 26 C 0.082 3.918 27 C -0.130 4.130 28 C 0.168 3.832 29 H 0.021 0.979 30 H 0.252 0.748 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.180 0.820 38 H 0.196 0.804 39 H 0.162 0.838 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 -18.118 2.971 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.146 4.146 13 H 0.098 0.902 14 C 0.007 3.993 15 N -0.315 5.315 16 C 0.368 3.632 17 O -0.417 6.417 18 C -0.136 4.136 19 C -0.213 4.213 20 C -0.160 4.160 21 N -0.095 5.095 22 N -0.128 5.128 23 C 0.375 3.625 24 F -0.151 7.151 25 F -0.141 7.141 26 C -0.040 4.040 27 C -0.170 4.170 28 C 0.060 3.940 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.197 0.803 38 H 0.213 0.787 39 H 0.179 0.821 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.590 -18.828 4.315 21.140 hybrid contribution 0.322 1.601 -0.620 1.747 sum 8.912 -17.227 3.695 19.745 Atomic orbital electron populations 1.69935 1.04910 1.25082 1.56881 1.24794 0.95671 0.97649 1.02233 0.86157 0.78612 0.83656 0.77558 1.21607 1.21710 1.20701 1.18988 0.90351 0.82291 1.43919 0.90355 1.44195 1.01648 0.99442 1.86585 1.21527 0.83927 0.88248 1.01028 1.22718 0.95664 0.99705 0.99330 1.22651 0.98092 0.93021 1.00794 0.90153 1.21742 0.80562 0.97547 0.99415 1.48003 1.10607 1.26017 1.46845 1.16921 0.85223 0.81858 0.79232 1.90814 1.46183 1.46915 1.57777 1.21572 0.96533 1.04507 0.90966 1.22735 0.90023 1.05180 1.03364 1.23838 1.00995 0.99893 0.91312 1.73254 0.90116 1.21211 1.24908 1.46982 1.05332 1.44084 1.16432 1.21450 0.74038 0.92337 0.74702 1.93132 1.81768 1.96502 1.43692 1.93218 1.50990 1.74768 1.95173 1.22555 0.89991 0.90588 1.00869 1.21834 0.99619 0.93333 1.02165 1.20635 0.91016 0.87280 0.95098 0.96187 0.93730 0.94319 0.92715 0.92245 0.91986 0.90738 0.88896 0.80267 0.78705 0.82136 0.87977 0.91006 0.90216 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.44 55.49 0.58 -25.95 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.04 9.88 -15.06 -0.15 -6.19 16 8 H 0.08 1.98 7.21 -52.48 -0.38 1.60 16 9 N -0.59 -14.39 3.35 -163.08 -0.55 -14.93 16 10 C 0.18 4.15 5.45 -1.92 -0.01 4.14 16 11 C -0.14 -2.42 6.54 -25.13 -0.16 -2.58 16 12 C -0.13 -2.14 2.85 -89.36 -0.26 -2.39 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.13 1.84 5.96 -3.76 -0.02 1.81 16 15 N -0.58 -7.96 3.00 -174.11 -0.52 -8.48 16 16 C 0.58 8.25 7.06 -12.64 -0.09 8.16 16 17 O -0.54 -8.68 14.13 5.26 0.07 -8.60 16 18 C -0.01 -0.12 6.38 -82.06 -0.52 -0.64 16 19 C -0.19 -1.77 8.58 -38.98 -0.33 -2.11 16 20 C 0.02 0.17 12.03 -17.43 -0.21 -0.04 16 21 N -0.27 -3.13 11.58 30.59 0.35 -2.77 16 22 N -0.33 -4.06 3.73 -62.39 -0.23 -4.29 16 23 C 0.51 5.51 6.05 59.85 0.36 5.87 16 24 F -0.17 -1.90 17.19 2.25 0.04 -1.87 16 25 F -0.16 -2.16 14.89 2.25 0.03 -2.13 16 26 C 0.08 1.00 5.03 -3.71 -0.02 0.98 16 27 C -0.13 -2.08 5.46 -27.19 -0.15 -2.23 16 28 C 0.17 3.19 2.57 -67.97 -0.17 3.01 16 29 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 32 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 33 H 0.06 0.97 8.11 -51.93 -0.42 0.54 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 37 H 0.18 1.27 6.04 -52.49 -0.32 0.96 16 38 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.16 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.10 1.07 3.75 -51.93 -0.19 0.87 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 43 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -32.73 346.29 -7.21 -39.94 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.35 Total: -0.21 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.83 Total: 7.50 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.37 Total: -56.43 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.07 Total: -4.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.73 -7.21 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036725713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.700 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds