Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00101 * 2 1 4 4 H 1.48504 * 109.46834 * 269.99767 * 3 2 1 5 5 H 1.48495 * 109.46830 * 29.99904 * 3 2 1 6 6 H 1.48501 * 109.47073 * 150.00082 * 3 2 1 7 7 C 1.38819 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40644 * 359.97313 * 9 7 2 11 11 C 1.55290 * 107.04457 * 184.92222 * 10 9 7 12 12 C 1.53744 * 101.84212 * 22.48005 * 11 10 9 13 13 H 1.08999 * 111.30761 * 79.84396 * 12 11 10 14 14 C 1.52242 * 114.75093 * 207.23506 * 12 11 10 15 15 N 1.47715 * 106.36049 * 169.60026 * 14 12 11 16 16 C 1.34775 * 119.68322 * 127.94302 * 15 14 12 17 17 O 1.21623 * 120.00182 * 359.41428 * 16 15 14 18 18 C 1.47164 * 119.99716 * 179.41090 * 16 15 14 19 19 C 1.38406 * 126.88619 * 333.20850 * 18 16 15 20 20 C 1.39676 * 105.35894 * 180.02562 * 19 18 16 21 21 N 1.30863 * 107.86237 * 0.02562 * 20 19 18 22 22 N 1.28447 * 110.92737 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.18763 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47208 * 22.28953 * 23 22 21 25 25 F 1.39899 * 109.46994 * 142.29202 * 23 22 21 26 26 C 1.46595 * 120.63192 * 308.22329 * 15 14 12 27 27 C 1.53544 * 110.81951 * 47.45281 * 26 15 14 28 28 C 1.45470 * 126.40224 * 179.97438 * 9 7 2 29 29 H 1.08999 * 109.27180 * 266.20863 * 28 9 7 30 30 H 0.96997 * 119.99787 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.92255 * 65.57292 * 10 9 7 32 32 H 1.09003 * 110.08343 * 304.35984 * 10 9 7 33 33 H 1.08995 * 110.95529 * 264.34152 * 11 10 9 34 34 H 1.09003 * 110.95514 * 140.61496 * 11 10 9 35 35 H 1.09006 * 110.06766 * 50.39259 * 14 12 11 36 36 H 1.08997 * 110.06825 * 288.81768 * 14 12 11 37 37 H 1.07998 * 127.31945 * 359.97438 * 19 18 16 38 38 H 1.07997 * 126.06884 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46914 * 262.29062 * 23 22 21 40 40 H 1.08997 * 109.25928 * 167.82525 * 26 15 14 41 41 H 1.09004 * 109.25205 * 287.25681 * 26 15 14 42 42 H 1.08994 * 109.96593 * 189.67361 * 27 26 15 43 43 H 1.08998 * 109.77683 * 68.66973 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5534 0.0006 11 6 -0.4341 -4.0741 0.1279 12 6 0.8684 -4.5892 0.7620 13 1 0.8851 -4.4065 1.8364 14 6 1.2009 -6.0407 0.4452 15 7 2.5823 -6.2640 0.9185 16 6 2.8484 -7.3029 1.7347 17 8 1.9514 -8.0450 2.0867 18 6 4.2244 -7.5394 2.2000 19 6 5.3936 -7.1752 1.5549 20 6 6.4268 -7.6149 2.3856 21 7 5.8856 -8.1893 3.4296 22 7 4.6036 -8.1640 3.3540 23 6 3.6879 -8.7195 4.3536 24 9 4.3436 -8.8127 5.5860 25 9 2.5733 -7.8837 4.4804 26 6 3.6653 -5.3627 0.5138 27 6 3.2476 -3.8954 0.6868 28 6 1.9079 -3.7211 0.0005 29 1 1.9895 -4.0780 -1.0261 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5632 -2.1737 -0.9324 32 1 -0.5832 -2.0209 0.8457 33 1 -0.5951 -4.5238 -0.8518 34 1 -1.2855 -4.2564 0.7837 35 1 1.1415 -6.2120 -0.6297 36 1 0.5138 -6.7049 0.9695 37 1 5.4871 -6.6612 0.6097 38 1 7.4845 -7.5018 2.1991 39 1 3.3643 -9.7115 4.0384 40 1 4.5449 -5.5597 1.1266 41 1 3.9099 -5.5422 -0.5332 42 1 3.9876 -3.2409 0.2263 43 1 3.1542 -3.6610 1.7472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036725713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = -11.603351 kcal Electronic energy + Delta-G solvation = -30835.647915 eV Core-core repulsion = 26361.721544 eV Total energy + Delta-G solvation = -4473.926371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.46597 -48.58110 -43.71199 -41.37322 -39.62166 -36.99601 -34.70320 -33.85272 -33.11856 -32.54398 -31.09751 -29.51695 -27.49819 -26.76108 -25.65172 -24.05795 -23.26573 -22.78077 -21.87473 -21.46045 -20.85321 -19.32970 -19.05098 -18.51879 -18.36519 -17.70882 -17.12324 -16.91307 -16.80526 -16.18372 -15.94255 -15.84320 -15.52344 -15.38529 -15.27856 -14.88470 -14.72801 -14.57440 -14.55394 -14.04881 -14.00950 -13.82173 -13.37982 -13.32701 -13.08755 -13.03610 -12.68979 -12.45317 -12.17775 -11.99993 -11.90362 -11.76885 -11.58398 -11.48750 -11.25009 -10.98013 -10.69134 -10.62347 -10.17813 -9.78854 -8.85583 -7.81880 -5.16018 0.00144 0.60855 1.47324 1.48741 1.49499 1.56827 1.66824 1.97982 2.45384 2.52026 2.86918 3.11106 3.37390 3.38449 3.49795 3.81611 3.87104 3.91390 3.99387 4.00777 4.20228 4.21776 4.33573 4.42349 4.52504 4.66401 4.68198 4.71575 4.81763 4.82215 4.90784 5.01490 5.08920 5.14153 5.22195 5.41297 5.45963 5.53712 5.55642 5.67580 5.78177 6.16787 6.22520 6.72975 6.88615 7.11046 7.81760 8.50270 9.30101 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.003142 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.516569 B = 8910.513377 C = 9503.803074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.228 4.228 8 H 0.090 0.910 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.120 4.120 12 C -0.112 4.112 13 H 0.056 0.944 14 C 0.138 3.862 15 N -0.586 5.586 16 C 0.582 3.418 17 O -0.564 6.564 18 C -0.038 4.038 19 C -0.168 4.168 20 C 0.027 3.973 21 N -0.289 5.289 22 N -0.343 5.343 23 C 0.501 3.499 24 F -0.176 7.176 25 F -0.181 7.181 26 C 0.091 3.909 27 C -0.125 4.125 28 C 0.158 3.842 29 H 0.032 0.968 30 H 0.244 0.756 31 H 0.005 0.995 32 H 0.013 0.987 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.209 0.791 38 H 0.234 0.766 39 H 0.195 0.805 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.800 -19.840 1.967 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.357 4.357 8 H 0.108 0.892 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.159 4.159 12 C -0.132 4.132 13 H 0.074 0.926 14 C 0.016 3.984 15 N -0.317 5.317 16 C 0.368 3.632 17 O -0.444 6.444 18 C -0.163 4.163 19 C -0.196 4.196 20 C -0.152 4.152 21 N -0.118 5.118 22 N -0.141 5.141 23 C 0.369 3.631 24 F -0.157 7.157 25 F -0.162 7.162 26 C -0.031 4.031 27 C -0.164 4.164 28 C 0.051 3.949 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.250 0.750 39 H 0.211 0.789 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.400 -20.587 3.312 23.764 hybrid contribution -0.480 2.115 -0.300 2.190 sum 10.919 -18.472 3.013 21.668 Atomic orbital electron populations 1.70168 1.06395 1.24998 1.58909 1.25619 0.96481 1.00980 1.03270 0.85150 0.77740 0.79508 0.77418 1.21307 1.22812 1.19114 1.19431 0.91117 0.83359 1.41800 0.89243 1.44497 1.02201 1.00970 1.86408 1.21290 0.83851 0.91679 0.97527 1.22581 0.96724 0.95455 1.01151 1.22470 0.96854 0.94926 0.98957 0.92574 1.21608 0.81247 0.94808 1.00704 1.48022 1.10553 1.26244 1.46903 1.17150 0.85851 0.81529 0.78628 1.90795 1.47248 1.47875 1.58456 1.21536 0.96304 1.06433 0.92021 1.23142 0.88874 1.03675 1.03866 1.24549 1.02630 0.98023 0.89990 1.73268 0.90050 1.22205 1.26295 1.47073 1.05560 1.44800 1.16628 1.22001 0.73464 0.93185 0.74495 1.93112 1.81856 1.96511 1.44193 1.93171 1.52149 1.75574 1.95304 1.22657 0.89868 0.87322 1.03226 1.21767 0.97942 0.96480 1.00186 1.20907 0.93032 0.84892 0.96091 0.95059 0.94710 0.97656 0.96887 0.89810 0.90671 0.88505 0.89080 0.77405 0.74981 0.78926 0.85908 0.87841 0.89925 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.48 10.44 21.65 0.23 -57.26 16 2 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.13 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.23 -12.21 9.88 84.04 0.83 -11.38 16 8 H 0.09 4.46 7.21 -2.91 -0.02 4.44 16 9 N -0.62 -30.21 3.35 -669.88 -2.24 -32.46 16 10 C 0.18 8.84 5.45 86.85 0.47 9.31 16 11 C -0.12 -4.25 6.54 31.63 0.21 -4.04 16 12 C -0.11 -3.71 2.85 -9.98 -0.03 -3.74 16 13 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.14 3.60 5.96 85.90 0.51 4.12 16 15 N -0.59 -14.38 3.00 -823.02 -2.47 -16.85 16 16 C 0.58 15.25 7.06 86.59 0.61 15.86 16 17 O -0.56 -17.46 14.13 -4.11 -0.06 -17.51 16 18 C -0.04 -0.83 6.38 40.79 0.26 -0.57 16 19 C -0.17 -2.51 8.58 22.66 0.19 -2.31 16 20 C 0.03 0.39 12.03 85.18 1.02 1.41 16 21 N -0.29 -6.08 11.58 -57.14 -0.66 -6.74 16 22 N -0.34 -7.77 3.73 -351.29 -1.31 -9.08 16 23 C 0.50 10.43 6.05 127.77 0.77 11.20 16 24 F -0.18 -3.84 17.19 44.97 0.77 -3.06 16 25 F -0.18 -4.87 14.89 44.97 0.67 -4.20 16 26 C 0.09 1.85 5.03 86.54 0.44 2.29 16 27 C -0.12 -3.73 5.46 30.29 0.17 -3.57 16 28 C 0.16 5.77 2.57 45.52 0.12 5.89 16 29 H 0.03 1.12 7.92 -2.39 -0.02 1.11 16 30 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.01 0.28 7.77 -2.39 -0.02 0.26 16 32 H 0.01 0.72 7.21 -2.39 -0.02 0.70 16 33 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.10 2.15 8.08 -2.38 -0.02 2.13 16 36 H 0.09 2.48 6.99 -2.39 -0.02 2.46 16 37 H 0.21 1.76 6.04 -2.91 -0.02 1.74 16 38 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.19 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.12 2.03 3.75 -2.39 -0.01 2.02 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 2.43 7.62 -2.39 -0.02 2.41 16 43 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 Total: -1.00 -75.03 346.29 4.04 -70.99 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.05 Total: 8.09 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.04 Total: 20.95 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.46 Total: -122.39 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.06 Total: -17.51 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 1.44 Total: -7.26 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.03 4.04 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036725713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.382 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds