Wall clock time and date at job start Sat Apr 11 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48497 * 109.47108 * 240.00469 * 3 2 1 5 5 H 1.48504 * 109.46722 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47185 * 119.99827 * 3 2 1 7 7 C 1.38812 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.47663 * 126.19929 * 359.97438 * 9 7 2 11 11 C 1.54644 * 106.93887 * 178.36119 * 10 9 7 12 12 C 1.56267 * 102.20602 * 335.91515 * 11 10 9 13 13 H 1.08997 * 112.61638 * 158.27058 * 12 11 10 14 14 C 1.51872 * 106.81860 * 282.54937 * 12 11 10 15 15 N 1.43527 * 116.04548 * 130.06547 * 14 12 11 16 16 C 1.34770 * 115.76319 * 180.54056 * 15 14 12 17 17 O 1.21562 * 120.00591 * 0.02562 * 16 15 14 18 18 C 1.47720 * 119.99597 * 180.02562 * 16 15 14 19 19 C 1.41499 * 126.51211 * 179.97438 * 18 16 15 20 20 C 1.35375 * 105.50035 * 179.97438 * 19 18 16 21 21 N 1.35036 * 107.22645 * 0.02562 * 20 19 18 22 22 C 1.46495 * 124.88339 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.47152 * 209.99959 * 22 21 20 24 24 F 1.39900 * 109.46827 * 329.99485 * 22 21 20 25 25 N 1.28473 * 110.23256 * 359.74552 * 21 20 19 26 26 C 1.44221 * 128.47251 * 0.56304 * 15 14 12 27 27 C 1.51864 * 112.74934 * 6.20384 * 26 15 14 28 28 C 1.46661 * 126.19820 * 179.97438 * 9 7 2 29 29 H 1.09001 * 108.98356 * 90.75376 * 28 9 7 30 30 H 0.97000 * 119.99299 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.96628 * 58.99147 * 10 9 7 32 32 H 1.08994 * 109.99284 * 297.74704 * 10 9 7 33 33 H 1.08998 * 110.85655 * 217.73850 * 11 10 9 34 34 H 1.08996 * 110.85958 * 94.09752 * 11 10 9 35 35 H 1.09003 * 108.16955 * 251.77390 * 14 12 11 36 36 H 1.09000 * 108.16438 * 8.36289 * 14 12 11 37 37 H 1.07998 * 127.25486 * 359.97438 * 19 18 16 38 38 H 1.07993 * 126.38603 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47506 * 89.99343 * 22 21 20 40 40 H 1.09003 * 108.82833 * 245.36776 * 26 15 14 41 41 H 1.08996 * 108.82722 * 127.05014 * 26 15 14 42 42 H 1.08993 * 109.00183 * 203.59622 * 27 26 15 43 43 H 1.09003 * 108.92922 * 84.79401 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1424 -2.5475 0.0005 11 6 -0.4307 -4.0662 -0.0422 12 6 0.8752 -4.6324 -0.6872 13 1 1.0289 -5.6883 -0.4647 14 6 0.7858 -4.3537 -2.1774 15 7 1.9327 -3.7278 -2.7714 16 6 1.8429 -3.4728 -4.0917 17 8 0.8343 -3.7710 -4.7012 18 6 2.9702 -2.8309 -4.7983 19 6 3.0244 -2.5024 -6.1736 20 6 4.2397 -1.9368 -6.3628 21 7 4.8688 -1.9316 -5.1680 22 6 6.2148 -1.4037 -4.9321 23 9 6.8162 -2.1106 -3.8853 24 9 6.9821 -1.5475 -6.0931 25 7 4.1149 -2.4509 -4.2666 26 6 3.1690 -3.3365 -2.1401 27 6 3.2582 -3.7886 -0.6931 28 6 1.9174 -3.7300 -0.0016 29 1 2.0489 -4.0603 1.0288 30 1 -0.4849 0.8401 0.0004 31 1 -0.5701 -2.0626 -0.8770 32 1 -0.5637 -2.1141 0.9075 33 1 -1.2969 -4.2793 -0.6687 34 1 -0.5707 -4.4632 0.9632 35 1 0.6112 -5.2996 -2.6903 36 1 -0.0791 -3.7138 -2.3522 37 1 2.2577 -2.6679 -6.9160 38 1 4.6330 -1.5607 -7.2956 39 1 6.1501 -0.3482 -4.6679 40 1 3.2533 -2.2502 -2.1749 41 1 4.0004 -3.7697 -2.6960 42 1 3.9596 -3.1447 -0.1627 43 1 3.6274 -4.8139 -0.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:52 Heat of formation + Delta-G solvation = 11.449461 kcal Electronic energy + Delta-G solvation = -31522.148008 eV Core-core repulsion = 27049.221281 eV Total energy + Delta-G solvation = -4472.926726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.71025 -47.80154 -42.71117 -40.08875 -38.02565 -35.03367 -33.19729 -32.65481 -31.79136 -30.91791 -29.42241 -27.91780 -26.71752 -25.10351 -24.10030 -22.70542 -22.34581 -21.65587 -20.04806 -19.56528 -18.83404 -18.55086 -17.79323 -17.58716 -16.78848 -16.32549 -16.02660 -15.59094 -15.34283 -14.66496 -14.62614 -14.58876 -14.29498 -14.09601 -13.95324 -13.65006 -13.52551 -13.28844 -13.00200 -12.87896 -12.55030 -12.38789 -12.02690 -11.55897 -11.42863 -11.22528 -10.95072 -10.84756 -10.69493 -10.55844 -10.16731 -9.90465 -9.81135 -9.68719 -9.63112 -9.47195 -9.44108 -9.31038 -8.57679 -7.94260 -6.78762 -5.67940 -2.99678 1.44231 1.64977 2.06342 3.13898 3.37544 3.41797 3.44169 3.44516 3.65325 3.68054 4.09063 4.49845 4.52803 4.62654 5.03743 5.16451 5.29513 5.35536 5.50892 5.56460 5.59002 5.65834 5.68076 5.80695 5.97733 6.08171 6.13995 6.19316 6.34448 6.36583 6.39264 6.46958 6.56758 6.62304 6.73728 6.83043 6.95430 7.23891 7.58247 7.63485 7.66033 7.83448 7.85185 8.27721 8.56931 9.23511 9.85902 10.54228 11.44610 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010416 B = 0.005009 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.481492 B = 5588.132238 C = 6873.676046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.217 4.217 8 H 0.076 0.924 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.142 4.142 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.144 3.856 15 N -0.557 5.557 16 C 0.583 3.417 17 O -0.542 6.542 18 C 0.015 3.985 19 C -0.168 4.168 20 C -0.008 4.008 21 N -0.358 5.358 22 C 0.505 3.495 23 F -0.166 7.166 24 F -0.178 7.178 25 N -0.233 5.233 26 C 0.131 3.869 27 C -0.124 4.124 28 C 0.169 3.831 29 H 0.025 0.975 30 H 0.251 0.749 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.752 -5.680 -10.118 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.346 4.346 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.100 0.900 14 C 0.021 3.979 15 N -0.286 5.286 16 C 0.368 3.632 17 O -0.419 6.419 18 C -0.148 4.148 19 C -0.196 4.196 20 C -0.147 4.147 21 N -0.155 5.155 22 C 0.372 3.628 23 F -0.147 7.147 24 F -0.159 7.159 25 N -0.066 5.066 26 C 0.008 3.992 27 C -0.163 4.163 28 C 0.061 3.939 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.204 0.796 39 H 0.180 0.820 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.942 -5.519 -9.313 15.393 hybrid contribution 0.285 0.982 -0.746 1.266 sum 11.227 -4.538 -10.059 15.742 Atomic orbital electron populations 1.69935 1.04781 1.24934 1.57077 1.24742 0.95601 0.97373 1.02651 0.86296 0.78495 0.83875 0.77661 1.21541 1.21722 1.21257 1.18857 0.90175 0.82180 1.43354 0.90585 1.44348 1.01413 0.99190 1.86654 1.21306 0.84327 0.88225 1.00918 1.23330 0.95662 0.99749 0.99348 1.22448 0.98606 0.98741 0.93525 0.89951 1.20340 0.87511 0.96766 0.93244 1.46242 1.16804 1.57829 1.07709 1.17004 0.84943 0.79105 0.82155 1.90748 1.30217 1.53814 1.67086 1.22240 0.93748 1.04966 0.93819 1.21853 0.97869 1.03941 0.95932 1.22806 0.94634 1.06365 0.90919 1.46883 1.13695 1.47204 1.07726 1.21467 0.72955 0.95173 0.73227 1.93159 1.82725 1.81690 1.57145 1.93128 1.74948 1.97070 1.50780 1.74160 1.03147 1.12208 1.17112 1.20950 0.83496 1.01478 0.93289 1.21271 0.99529 1.00383 0.95125 1.20242 0.90739 0.87368 0.95519 0.95808 0.93828 0.93522 0.94001 0.91886 0.92230 0.93044 0.91204 0.81419 0.79633 0.82023 0.90173 0.91521 0.90624 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.41 55.49 0.58 -26.36 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -5.77 8.84 -15.06 -0.13 -5.90 16 8 H 0.08 1.95 6.89 -52.49 -0.36 1.58 16 9 N -0.59 -14.34 3.04 -164.19 -0.50 -14.84 16 10 C 0.18 4.24 4.82 -2.54 -0.01 4.23 16 11 C -0.14 -2.64 6.14 -24.11 -0.15 -2.79 16 12 C -0.11 -1.99 3.80 -88.93 -0.34 -2.33 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 14 C 0.14 2.72 4.61 -6.19 -0.03 2.69 16 15 N -0.56 -10.81 3.19 -180.34 -0.58 -11.38 16 16 C 0.58 11.51 7.52 -12.39 -0.09 11.42 16 17 O -0.54 -11.70 16.50 5.31 0.09 -11.62 16 18 C 0.02 0.26 6.74 -82.76 -0.56 -0.29 16 19 C -0.17 -2.31 10.81 -39.36 -0.43 -2.73 16 20 C -0.01 -0.08 10.98 -17.16 -0.19 -0.27 16 21 N -0.36 -4.41 3.68 -66.62 -0.24 -4.66 16 22 C 0.50 4.47 6.56 59.84 0.39 4.86 16 23 F -0.17 -1.85 17.26 2.25 0.04 -1.81 16 24 F -0.18 -1.45 16.96 2.25 0.04 -1.41 16 25 N -0.23 -3.71 7.77 33.42 0.26 -3.45 16 26 C 0.13 2.41 4.23 -5.83 -0.02 2.39 16 27 C -0.12 -2.20 5.10 -28.33 -0.14 -2.34 16 28 C 0.17 3.36 2.92 -68.35 -0.20 3.16 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.05 1.27 7.13 -51.93 -0.37 0.90 16 32 H 0.04 1.11 7.58 -51.93 -0.39 0.72 16 33 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 37 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.16 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.70 6.66 -51.93 -0.35 1.35 16 41 H 0.07 1.14 6.38 -51.93 -0.33 0.81 16 42 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -33.39 347.79 -7.54 -40.93 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.44 Total: 0.65 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -2.00 Total: 11.79 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.48 Total: -60.69 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.39 -7.54 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.379 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds