Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48498 * 109.47475 * 239.99816 * 3 2 1 5 5 H 1.48499 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47212 * 119.99976 * 3 2 1 7 7 C 1.38809 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00198 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.48261 * 126.39608 * 359.97169 * 9 7 2 11 11 C 1.55283 * 106.99782 * 184.94287 * 10 9 7 12 12 C 1.53750 * 101.87276 * 22.48775 * 11 10 9 13 13 H 1.09001 * 111.30607 * 79.82479 * 12 11 10 14 14 C 1.52237 * 114.74440 * 207.22140 * 12 11 10 15 15 N 1.47719 * 106.36791 * 169.58297 * 14 12 11 16 16 C 1.34777 * 119.68795 * 127.94194 * 15 14 12 17 17 O 1.21568 * 120.00085 * 176.41146 * 16 15 14 18 18 C 1.47709 * 119.99805 * 356.40810 * 16 15 14 19 19 C 1.41501 * 126.51891 * 186.83379 * 18 16 15 20 20 C 1.35365 * 105.50334 * 179.90470 * 19 18 16 21 21 N 1.35032 * 107.23185 * 0.35718 * 20 19 18 22 22 C 1.46501 * 124.88852 * 179.76815 * 21 20 19 23 23 F 1.39896 * 109.47049 * 209.97825 * 22 21 20 24 24 F 1.39906 * 109.46577 * 329.97231 * 22 21 20 25 25 N 1.28470 * 110.22764 * 359.76635 * 21 20 19 26 26 C 1.46599 * 120.62598 * 307.96076 * 15 14 12 27 27 C 1.53955 * 110.57574 * 47.80799 * 26 15 14 28 28 C 1.45467 * 126.40679 * 180.02562 * 9 7 2 29 29 H 1.08998 * 108.77318 * 265.95590 * 28 9 7 30 30 H 0.96996 * 120.00246 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.94663 * 65.59994 * 10 9 7 32 32 H 1.08997 * 109.93160 * 304.27368 * 10 9 7 33 33 H 1.09002 * 110.95870 * 264.33804 * 11 10 9 34 34 H 1.09001 * 110.95735 * 140.64160 * 11 10 9 35 35 H 1.09004 * 110.07393 * 288.79444 * 14 12 11 36 36 H 1.09002 * 110.06933 * 50.36657 * 14 12 11 37 37 H 1.08004 * 127.24654 * 0.02562 * 19 18 16 38 38 H 1.07997 * 126.38355 * 180.09109 * 20 19 18 39 39 H 1.08990 * 109.47469 * 89.97434 * 22 21 20 40 40 H 1.09007 * 109.25253 * 168.08931 * 26 15 14 41 41 H 1.08999 * 109.25737 * 287.52267 * 26 15 14 42 42 H 1.08991 * 109.87820 * 68.40625 * 27 26 15 43 43 H 1.08997 * 109.87728 * 189.48032 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1477 -2.5532 -0.0017 11 6 -0.4340 -4.0742 0.1249 12 6 0.8685 -4.5895 0.7588 13 1 0.8852 -4.4072 1.8333 14 6 1.2011 -6.0408 0.4412 15 7 2.5826 -6.2643 0.9140 16 6 2.8490 -7.3037 1.7296 17 8 3.9937 -7.5317 2.0696 18 6 1.7501 -8.1657 2.2103 19 6 1.8504 -9.2018 3.1689 20 6 0.5997 -9.7053 3.2896 21 7 -0.1937 -9.0125 2.4446 22 6 -1.6286 -9.2451 2.2621 23 9 -1.9922 -8.9117 0.9531 24 9 -1.9158 -10.5941 2.4966 25 7 0.4908 -8.1201 1.8238 26 6 3.6665 -5.3661 0.5048 27 6 3.2473 -3.8956 0.6837 28 6 1.9079 -3.7211 -0.0017 29 1 1.9824 -4.0712 -1.0313 30 1 -0.4850 0.8400 0.0004 31 1 -0.5645 -2.1732 -0.9344 32 1 -0.5813 -2.0220 0.8456 33 1 -0.5949 -4.5235 -0.8551 34 1 -1.2855 -4.2574 0.7802 35 1 0.5143 -6.7054 0.9653 36 1 1.1413 -6.2116 -0.6337 37 1 2.7376 -9.5219 3.6950 38 1 0.2943 -10.5136 3.9374 39 1 -2.1889 -8.6270 2.9635 40 1 4.5479 -5.5654 1.1144 41 1 3.9067 -5.5465 -0.5430 42 1 3.1538 -3.6633 1.7445 43 1 3.9873 -3.2407 0.2238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = 9.930393 kcal Electronic energy + Delta-G solvation = -30526.512820 eV Core-core repulsion = 26053.520222 eV Total energy + Delta-G solvation = -4472.992598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.89651 -47.99097 -43.01772 -39.98009 -38.17507 -35.25912 -33.42359 -32.53065 -31.96052 -30.95928 -29.51276 -28.08079 -27.04908 -25.00966 -23.92141 -22.96768 -21.98321 -21.73207 -20.17220 -19.78995 -19.31056 -18.81940 -18.70451 -17.80886 -16.99323 -16.46848 -15.95953 -15.74565 -15.03510 -14.90481 -14.78726 -14.76212 -14.44177 -14.29669 -13.88763 -13.82554 -13.71347 -13.47033 -13.13290 -13.00923 -12.75133 -12.54386 -12.29055 -11.91138 -11.51038 -11.39060 -10.90779 -10.78064 -10.59491 -10.52546 -10.21959 -10.12745 -9.92093 -9.83152 -9.80204 -9.60700 -9.57877 -9.21367 -8.59703 -8.45801 -6.80540 -5.69040 -3.01716 1.11108 1.36046 1.78732 2.93230 3.05410 3.31749 3.42076 3.42972 3.46687 3.47420 3.87436 4.27032 4.28880 4.51995 4.74231 5.08021 5.20924 5.25554 5.37480 5.41230 5.47580 5.55916 5.65927 5.66589 5.87499 5.92434 5.95976 6.08734 6.17882 6.25226 6.29225 6.36035 6.49638 6.54844 6.65645 6.69911 6.93195 7.12068 7.33712 7.54570 7.58548 7.63537 7.82769 8.19646 8.26987 9.22224 9.85857 10.54219 11.43553 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.003144 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.896735 B = 8903.383632 C =10184.530108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.121 4.121 13 H 0.077 0.923 14 C 0.087 3.913 15 N -0.589 5.589 16 C 0.595 3.405 17 O -0.539 6.539 18 C 0.018 3.982 19 C -0.169 4.169 20 C 0.000 4.000 21 N -0.357 5.357 22 C 0.502 3.498 23 F -0.164 7.164 24 F -0.176 7.176 25 N -0.242 5.242 26 C 0.116 3.884 27 C -0.128 4.128 28 C 0.166 3.834 29 H 0.020 0.980 30 H 0.252 0.748 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.165 0.835 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -21.711 6.576 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.141 4.141 13 H 0.095 0.905 14 C -0.036 4.036 15 N -0.320 5.320 16 C 0.381 3.619 17 O -0.415 6.415 18 C -0.145 4.145 19 C -0.196 4.196 20 C -0.140 4.140 21 N -0.153 5.153 22 C 0.370 3.630 23 F -0.145 7.145 24 F -0.157 7.157 25 N -0.074 5.074 26 C -0.006 4.006 27 C -0.167 4.167 28 C 0.058 3.942 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.188 0.812 38 H 0.207 0.793 39 H 0.182 0.818 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.328 -21.065 5.973 22.319 hybrid contribution 0.758 0.441 0.332 0.938 sum -3.569 -20.624 6.304 21.859 Atomic orbital electron populations 1.69926 1.04870 1.25063 1.57192 1.24775 0.95674 0.97579 1.02436 0.86234 0.78476 0.83387 0.77885 1.21212 1.21669 1.21224 1.18969 0.90367 0.82365 1.43557 0.90431 1.44241 1.01639 0.99505 1.86629 1.21540 0.83970 0.88301 1.00878 1.22692 0.95671 0.99653 0.99270 1.22586 0.97753 0.93432 1.00349 0.90501 1.22803 0.81724 0.98642 1.00412 1.48187 1.10660 1.26619 1.46518 1.17001 0.86261 0.80082 0.78600 1.90774 1.20395 1.71452 1.58899 1.22301 0.90806 1.00433 1.00937 1.21875 0.97889 0.98015 1.01827 1.22873 0.90597 1.01158 0.99333 1.47071 1.09496 1.26939 1.31772 1.21537 0.78384 0.79728 0.83370 1.93177 1.90355 1.92049 1.38958 1.93145 1.92164 1.35931 1.94471 1.73448 1.04856 1.10454 1.18648 1.21705 0.89386 0.89339 1.00198 1.21874 0.99291 0.93596 1.01937 1.20654 0.91254 0.87125 0.95166 0.96258 0.93785 0.94409 0.92810 0.92360 0.92278 0.84940 0.91437 0.81190 0.79341 0.81828 0.89287 0.91689 0.91465 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.44 55.49 0.58 -26.45 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.17 9.88 -15.06 -0.15 -6.32 16 8 H 0.08 2.05 7.21 -52.49 -0.38 1.67 16 9 N -0.60 -15.01 3.35 -163.07 -0.55 -15.56 16 10 C 0.18 4.27 5.45 -1.86 -0.01 4.26 16 11 C -0.13 -2.46 6.53 -25.13 -0.16 -2.62 16 12 C -0.12 -2.16 2.85 -89.38 -0.26 -2.41 16 13 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 14 C 0.09 1.33 5.80 -3.76 -0.02 1.31 16 15 N -0.59 -9.33 3.00 -173.65 -0.52 -9.85 16 16 C 0.60 9.49 7.67 -12.39 -0.10 9.39 16 17 O -0.54 -9.69 16.28 5.31 0.09 -9.61 16 18 C 0.02 0.24 6.88 -82.76 -0.57 -0.33 16 19 C -0.17 -1.74 10.81 -39.36 -0.43 -2.17 16 20 C 0.00 0.00 10.98 -17.17 -0.19 -0.18 16 21 N -0.36 -3.24 3.68 -66.63 -0.24 -3.49 16 22 C 0.50 3.04 6.56 59.85 0.39 3.43 16 23 F -0.16 -1.44 17.26 2.25 0.04 -1.40 16 24 F -0.18 -1.04 16.96 2.25 0.04 -1.00 16 25 N -0.24 -2.97 7.99 33.42 0.27 -2.70 16 26 C 0.12 1.84 6.31 -3.49 -0.02 1.82 16 27 C -0.13 -2.33 5.48 -27.01 -0.15 -2.48 16 28 C 0.17 3.41 2.55 -68.02 -0.17 3.23 16 29 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 32 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 33 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.13 1.92 3.70 -126.52 -0.47 1.45 16 36 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 38 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.17 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 1.40 6.98 -51.92 -0.36 1.04 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 43 H 0.08 1.41 7.62 -51.93 -0.40 1.02 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -33.86 352.84 -7.66 -41.53 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.73 Total: -0.50 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.93 Total: 6.59 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.47 Total: -58.04 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.86 -7.66 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.457 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds