Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47545 * 88.09192 * 3 2 1 5 5 H 1.48500 * 109.47311 * 328.09176 * 3 2 1 6 6 H 1.48507 * 109.47457 * 208.09424 * 3 2 1 7 7 C 1.38812 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99822 * 36.62704 * 7 2 1 9 9 N 1.36933 * 120.00244 * 216.63409 * 7 2 1 10 10 C 1.46871 * 125.33530 * 357.88344 * 9 7 2 11 11 C 1.54463 * 106.66323 * 195.33569 * 10 9 7 12 12 C 1.53383 * 102.53692 * 332.27296 * 11 10 9 13 13 H 1.08999 * 105.70340 * 277.66770 * 12 11 10 14 14 C 1.49276 * 114.27967 * 161.96781 * 12 11 10 15 15 N 1.45262 * 114.72028 * 258.58974 * 14 12 11 16 16 C 1.34778 * 120.15313 * 143.67316 * 15 14 12 17 17 O 1.21571 * 120.00115 * 186.00805 * 16 15 14 18 18 C 1.47718 * 120.00083 * 6.01280 * 16 15 14 19 19 C 1.41496 * 126.51892 * 186.92423 * 18 16 15 20 20 C 1.35366 * 105.50479 * 179.97438 * 19 18 16 21 21 N 1.35038 * 107.22452 * 359.97438 * 20 19 18 22 22 C 1.46505 * 124.88027 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47002 * 299.99853 * 22 21 20 24 24 F 1.39893 * 109.46960 * 59.99995 * 22 21 20 25 25 N 1.28466 * 110.22975 * 359.72737 * 21 20 19 26 26 C 1.46820 * 119.54259 * 323.90955 * 15 14 12 27 27 C 1.52966 * 107.40035 * 54.76848 * 26 15 14 28 28 C 1.48007 * 125.34016 * 177.58468 * 9 7 2 29 29 H 1.09000 * 110.22856 * 303.31139 * 28 9 7 30 30 H 0.97008 * 119.99693 * 185.02259 * 1 2 3 31 31 H 1.09001 * 110.02307 * 314.63842 * 10 9 7 32 32 H 1.09004 * 110.01625 * 75.99261 * 10 9 7 33 33 H 1.08998 * 110.79745 * 90.53801 * 11 10 9 34 34 H 1.09008 * 110.79950 * 214.01431 * 11 10 9 35 35 H 1.08998 * 108.44701 * 20.49064 * 14 12 11 36 36 H 1.09005 * 108.44058 * 137.79554 * 14 12 11 37 37 H 1.08005 * 127.24594 * 0.02562 * 19 18 16 38 38 H 1.07996 * 126.38359 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.46647 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.87045 * 295.30033 * 26 15 14 41 41 H 1.09001 * 109.92998 * 174.27463 * 26 15 14 42 42 H 1.09003 * 109.38461 * 178.37997 * 27 26 15 43 43 H 1.09000 * 109.38214 * 58.70540 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4573 2.0698 1.3992 5 1 1.4683 2.6407 -0.7400 6 1 3.5673 1.4290 -0.6593 7 6 2.0103 -1.2021 -0.0005 8 1 1.6303 -2.0448 -0.5589 9 7 3.1768 -1.3195 0.7070 10 6 3.8208 -0.2411 1.4682 11 6 5.2649 -0.7057 1.7592 12 6 5.1265 -2.2332 1.7747 13 1 4.7663 -2.4866 2.7718 14 6 6.4159 -2.9680 1.6143 15 7 6.6541 -3.4929 0.2809 16 6 7.9010 -3.5010 -0.2307 17 8 8.0824 -3.8382 -1.3845 18 6 9.0471 -3.1001 0.6105 19 6 10.3849 -2.9262 0.1836 20 6 11.0731 -2.5594 1.2900 21 7 10.1927 -2.5180 2.3131 22 6 10.5290 -2.1622 3.6939 23 9 11.4816 -3.0599 4.1879 24 9 11.0497 -0.8643 3.7274 25 7 9.0168 -2.8294 1.9001 26 6 5.5271 -4.0090 -0.5059 27 6 4.4742 -2.9018 -0.5776 28 6 3.9830 -2.5546 0.8298 29 1 3.3743 -3.3634 1.2342 30 1 -0.4850 -0.8369 0.0736 31 1 3.8354 0.6751 0.8779 32 1 3.2863 -0.0738 2.4033 33 1 5.9413 -0.3864 0.9663 34 1 5.6020 -0.3378 2.7284 35 1 7.2316 -2.2951 1.8787 36 1 6.4248 -3.8052 2.3123 37 1 10.7747 -3.0576 -0.8151 38 1 12.1291 -2.3399 1.3442 39 1 9.6313 -2.2100 4.3103 40 1 5.1070 -4.8887 -0.0185 41 1 5.8625 -4.2669 -1.5105 42 1 3.6324 -3.2415 -1.1810 43 1 4.9119 -2.0154 -1.0368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 12.262482 kcal Electronic energy + Delta-G solvation = -30583.544938 eV Core-core repulsion = 26110.653467 eV Total energy + Delta-G solvation = -4472.891471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.98423 -48.06993 -43.08420 -40.19221 -38.41631 -35.55221 -33.46721 -32.84686 -32.08919 -31.11439 -30.23314 -28.44724 -27.14729 -25.39935 -23.73473 -23.25644 -22.14988 -22.01995 -20.75945 -20.01948 -19.17225 -18.53955 -18.31331 -17.91115 -17.40877 -17.10848 -16.10736 -16.07587 -15.27130 -15.07795 -14.92058 -14.91499 -14.68914 -14.38548 -14.24821 -14.02633 -13.67060 -13.48082 -13.37521 -13.08251 -12.93439 -12.70409 -12.48299 -12.06121 -11.98230 -11.68817 -11.26685 -11.18557 -10.76797 -10.69960 -10.38719 -10.25757 -10.02399 -9.97037 -9.83687 -9.65695 -9.55861 -9.08168 -8.52951 -8.27352 -7.09976 -6.38940 -3.08413 1.04043 1.24447 1.71739 2.88068 2.95890 3.22170 3.44739 3.47280 3.54955 3.70763 3.95123 4.14884 4.23131 4.63640 4.65125 4.75181 4.89733 5.06343 5.17949 5.23196 5.29130 5.36210 5.45814 5.53876 5.67107 5.70551 5.79681 5.81176 5.95696 6.01504 6.04721 6.12886 6.23257 6.26273 6.48260 6.49832 6.56288 6.80034 6.83578 7.00652 7.22819 7.44115 7.74864 8.09547 8.35839 9.03414 9.62889 10.29920 11.09438 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003326 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.953008 B = 8415.922781 C = 9376.685784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.009 4.009 3 Si 1.045 2.955 4 H -0.296 1.296 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.340 4.340 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.118 3.882 11 C -0.121 4.121 12 C -0.108 4.108 13 H 0.069 0.931 14 C 0.122 3.878 15 N -0.586 5.586 16 C 0.598 3.402 17 O -0.532 6.532 18 C 0.020 3.980 19 C -0.168 4.168 20 C 0.000 4.000 21 N -0.352 5.352 22 C 0.497 3.503 23 F -0.175 7.175 24 F -0.174 7.174 25 N -0.246 5.246 26 C 0.111 3.889 27 C -0.140 4.140 28 C 0.177 3.823 29 H 0.048 0.952 30 H 0.266 0.734 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.173 0.827 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.893 -6.691 8.811 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.211 4.211 3 Si 0.879 3.121 4 H -0.224 1.224 5 H -0.229 1.229 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.330 5.330 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.127 4.127 13 H 0.088 0.912 14 C -0.002 4.002 15 N -0.317 5.317 16 C 0.384 3.616 17 O -0.407 6.407 18 C -0.143 4.143 19 C -0.195 4.195 20 C -0.140 4.140 21 N -0.148 5.148 22 C 0.363 3.637 23 F -0.156 7.156 24 F -0.155 7.155 25 N -0.078 5.078 26 C -0.011 4.011 27 C -0.180 4.180 28 C 0.069 3.931 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.188 0.812 38 H 0.204 0.796 39 H 0.190 0.810 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.022 -5.120 9.180 25.308 hybrid contribution 1.041 -1.430 -0.473 1.831 sum 24.063 -6.550 8.707 26.415 Atomic orbital electron populations 1.70893 1.06617 1.29377 1.46991 1.25498 0.95667 1.00604 0.99344 0.84113 0.74452 0.77418 0.76130 1.22400 1.22866 1.22196 1.19845 0.96197 1.00394 1.30150 0.90166 1.45028 1.25810 1.04458 1.57690 1.21593 0.90788 0.92706 0.95557 1.22397 0.98193 0.94471 1.00897 1.20779 0.94712 0.96039 1.01218 0.91217 1.20825 0.98435 0.98457 0.82461 1.47540 1.06708 1.59861 1.17621 1.16883 0.81262 0.78095 0.85378 1.90794 1.84401 1.49294 1.16252 1.22237 0.95896 1.06077 0.90138 1.21898 0.91653 1.05695 1.00256 1.22988 0.98195 1.05483 0.87330 1.46699 1.06638 1.52372 1.09137 1.21198 0.89918 0.72358 0.80231 1.93156 1.68055 1.68130 1.86275 1.93164 1.88977 1.37645 1.95707 1.73712 1.03123 1.17048 1.13940 1.21771 0.85822 0.96811 0.96692 1.22411 0.97518 0.97849 1.00202 1.20460 0.89691 0.90735 0.92183 0.93385 0.92428 0.94645 0.95144 0.91923 0.91269 0.87947 0.92217 0.81208 0.79615 0.81029 0.91212 0.89036 0.90832 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.70 55.49 0.76 -27.03 16 2 C -0.01 -0.26 5.38 -17.43 -0.09 -0.35 16 3 Si 1.04 26.68 24.91 -169.99 -4.23 22.45 16 4 H -0.30 -7.19 7.06 56.52 0.40 -6.79 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.29 -7.27 6.68 56.52 0.38 -6.89 16 7 C -0.34 -9.50 9.91 -15.06 -0.15 -9.65 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 N -0.60 -14.47 3.02 -164.00 -0.50 -14.96 16 10 C 0.12 2.58 5.40 -3.07 -0.02 2.56 16 11 C -0.12 -2.02 6.37 -25.77 -0.16 -2.18 16 12 C -0.11 -1.68 2.45 -92.87 -0.23 -1.90 16 13 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 14 C 0.12 1.61 5.22 -6.54 -0.03 1.58 16 15 N -0.59 -8.61 2.99 -177.80 -0.53 -9.14 16 16 C 0.60 9.12 7.67 -12.39 -0.10 9.03 16 17 O -0.53 -9.43 16.33 5.30 0.09 -9.34 16 18 C 0.02 0.25 6.74 -82.77 -0.56 -0.30 16 19 C -0.17 -1.74 10.81 -39.37 -0.43 -2.16 16 20 C 0.00 0.00 11.33 -17.17 -0.19 -0.20 16 21 N -0.35 -3.06 3.56 -66.62 -0.24 -3.29 16 22 C 0.50 2.80 6.24 59.85 0.37 3.17 16 23 F -0.17 -1.09 17.46 2.25 0.04 -1.06 16 24 F -0.17 -1.16 17.46 2.25 0.04 -1.12 16 25 N -0.25 -2.68 8.58 33.42 0.29 -2.40 16 26 C 0.11 1.67 6.44 -3.88 -0.03 1.65 16 27 C -0.14 -2.54 5.18 -26.72 -0.14 -2.68 16 28 C 0.18 3.39 3.41 -67.70 -0.23 3.15 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 31 H 0.04 0.84 2.99 -51.93 -0.16 0.68 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.10 1.29 4.59 -51.93 -0.24 1.05 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.17 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 42 H 0.07 1.40 8.12 -51.93 -0.42 0.98 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -34.25 350.19 -6.41 -40.66 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.42 Total: -1.76 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.98 Total: 1.72 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.22 Total: -56.83 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.08 Total: -2.17 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.23 Total: 22.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.25 -6.41 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.921 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds