Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48500 * 109.46881 * 274.97105 * 3 2 1 5 5 H 1.48499 * 109.47414 * 34.97003 * 3 2 1 6 6 H 1.48497 * 109.47170 * 154.97594 * 3 2 1 7 7 C 1.38813 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99980 * 188.92788 * 7 2 1 9 9 N 1.36935 * 119.99866 * 8.92978 * 7 2 1 10 10 C 1.48161 * 126.40795 * 357.39847 * 9 7 2 11 11 C 1.55287 * 107.04359 * 175.07517 * 10 9 7 12 12 C 1.53747 * 101.84104 * 337.51941 * 11 10 9 13 13 H 1.08991 * 111.31102 * 280.14688 * 12 11 10 14 14 C 1.52244 * 114.73735 * 152.75042 * 12 11 10 15 15 N 1.47717 * 106.36471 * 190.43050 * 14 12 11 16 16 C 1.34783 * 119.68126 * 232.03316 * 15 14 12 17 17 O 1.21572 * 119.99589 * 172.84431 * 16 15 14 18 18 C 1.47709 * 120.00038 * 352.85068 * 16 15 14 19 19 C 1.41501 * 126.51833 * 172.93500 * 18 16 15 20 20 C 1.35358 * 105.50316 * 179.97438 * 19 18 16 21 21 N 1.35032 * 107.23169 * 359.97438 * 20 19 18 22 22 C 1.46500 * 124.88694 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46909 * 299.99493 * 22 21 20 24 24 F 1.39902 * 109.47153 * 59.99798 * 22 21 20 25 25 N 1.28471 * 110.22884 * 359.72268 * 21 20 19 26 26 C 1.46597 * 120.63592 * 52.06304 * 15 14 12 27 27 C 1.53947 * 110.57185 * 312.17008 * 26 15 14 28 28 C 1.45467 * 126.40339 * 177.08602 * 9 7 2 29 29 H 1.08995 * 109.26583 * 93.80122 * 28 9 7 30 30 H 0.97003 * 120.00255 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.91857 * 294.42720 * 10 9 7 32 32 H 1.09004 * 109.91639 * 55.72818 * 10 9 7 33 33 H 1.08998 * 110.95857 * 95.65730 * 11 10 9 34 34 H 1.08997 * 110.95413 * 219.38400 * 11 10 9 35 35 H 1.09002 * 110.07091 * 309.64505 * 14 12 11 36 36 H 1.09000 * 110.07172 * 71.11434 * 14 12 11 37 37 H 1.08002 * 127.24781 * 359.97438 * 19 18 16 38 38 H 1.08001 * 126.38502 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47039 * 179.97438 * 22 21 20 40 40 H 1.08996 * 109.25968 * 72.45266 * 26 15 14 41 41 H 1.09003 * 109.25657 * 191.92915 * 26 15 14 42 42 H 1.09004 * 109.88817 * 170.51484 * 27 26 15 43 43 H 1.08999 * 109.88334 * 291.52324 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5041 2.6201 0.8024 6 1 3.5963 1.4122 0.5922 7 6 2.0103 -1.2022 -0.0005 8 1 3.0804 -1.2079 0.1446 9 7 1.3380 -2.3808 -0.1851 10 6 -0.1263 -2.5426 -0.3424 11 6 -0.3882 -4.0422 -0.6489 12 6 0.9728 -4.4930 -1.2043 13 1 1.0903 -4.2030 -2.2483 14 6 1.2850 -5.9696 -1.0043 15 7 2.7070 -6.1466 -1.3628 16 6 3.0582 -7.0990 -2.2495 17 8 4.2050 -7.1658 -2.6474 18 6 2.0497 -8.0615 -2.7378 19 6 2.2278 -9.0200 -3.7634 20 6 1.0439 -9.6687 -3.8618 21 7 0.2129 -9.1257 -2.9464 22 6 -1.1737 -9.5421 -2.7221 23 9 -1.9095 -9.3662 -3.8988 24 9 -1.2015 -10.8909 -2.3518 25 7 0.8152 -8.1957 -2.2961 26 6 3.7400 -5.2968 -0.7629 27 6 3.3286 -3.8149 -0.8318 28 6 1.9287 -3.7074 -0.2698 29 1 1.9198 -4.1688 0.7176 30 1 -0.4850 0.8400 0.0004 31 1 -0.6326 -2.2581 0.5800 32 1 -0.4813 -1.9271 -1.1691 33 1 -0.6382 -4.5882 0.2607 34 1 -1.1718 -4.1559 -1.3979 35 1 1.1243 -6.2482 0.0372 36 1 0.6553 -6.5766 -1.6548 37 1 3.1204 -9.1966 -4.3452 38 1 0.8081 -10.4717 -4.5445 39 1 -1.6101 -8.9382 -1.9265 40 1 3.8802 -5.5829 0.2795 41 1 4.6770 -5.4346 -1.3026 42 1 4.0161 -3.2113 -0.2392 43 1 3.3364 -3.4758 -1.8677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 5.713415 kcal Electronic energy + Delta-G solvation = -30330.852928 eV Core-core repulsion = 25857.677468 eV Total energy + Delta-G solvation = -4473.175460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.93010 -48.01591 -43.04269 -40.03603 -38.22596 -35.29978 -33.41985 -32.57083 -32.01984 -30.99494 -29.56210 -28.12158 -27.04729 -25.06885 -23.99708 -23.04587 -21.94884 -21.82590 -20.19759 -19.84577 -19.28329 -18.83317 -18.48638 -17.94329 -17.06944 -16.51868 -15.98651 -15.79105 -15.04847 -14.92103 -14.84459 -14.66700 -14.47884 -14.33256 -14.07050 -13.85187 -13.76240 -13.53614 -13.18461 -13.01063 -12.65015 -12.55471 -12.32554 -11.94077 -11.54030 -11.41431 -11.00922 -10.83457 -10.68046 -10.61631 -10.26476 -10.10811 -9.98400 -9.90738 -9.85358 -9.65861 -9.61818 -9.30133 -8.59072 -8.49672 -6.83673 -5.73498 -3.03700 1.07852 1.29143 1.76206 2.93526 3.00678 3.27266 3.40666 3.46479 3.47822 3.53337 4.00579 4.19175 4.26575 4.50267 4.67592 5.03021 5.18768 5.22584 5.33188 5.37928 5.43529 5.52476 5.61255 5.62992 5.83935 5.88488 5.91204 6.05923 6.12541 6.19431 6.23756 6.28100 6.43400 6.48358 6.61091 6.66895 6.87896 7.07948 7.27375 7.47969 7.55820 7.59240 7.80105 8.14989 8.23589 9.19306 9.83354 10.51439 11.40128 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.002982 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.588458 B = 9386.925601 C =10568.675206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.124 4.124 13 H 0.078 0.922 14 C 0.104 3.896 15 N -0.590 5.590 16 C 0.596 3.404 17 O -0.536 6.536 18 C 0.022 3.978 19 C -0.169 4.169 20 C 0.000 4.000 21 N -0.353 5.353 22 C 0.496 3.504 23 F -0.173 7.173 24 F -0.175 7.175 25 N -0.244 5.244 26 C 0.116 3.884 27 C -0.129 4.129 28 C 0.168 3.832 29 H 0.018 0.982 30 H 0.252 0.748 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.170 0.830 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -21.965 -5.662 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.145 4.145 13 H 0.096 0.904 14 C -0.019 4.019 15 N -0.322 5.322 16 C 0.382 3.618 17 O -0.412 6.412 18 C -0.142 4.142 19 C -0.196 4.196 20 C -0.140 4.140 21 N -0.149 5.149 22 C 0.362 3.638 23 F -0.155 7.155 24 F -0.157 7.157 25 N -0.077 5.077 26 C -0.006 4.006 27 C -0.168 4.168 28 C 0.060 3.940 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.188 0.812 38 H 0.204 0.796 39 H 0.191 0.809 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.039 -21.400 -5.039 22.194 hybrid contribution 0.749 0.480 -0.711 1.139 sum -2.290 -20.919 -5.751 21.816 Atomic orbital electron populations 1.69961 1.04924 1.25035 1.56765 1.24783 0.95636 0.97603 1.02323 0.86169 0.78769 0.83813 0.77485 1.21694 1.21851 1.20616 1.19012 0.91441 0.82621 1.42310 0.90298 1.44203 1.02229 1.00684 1.84789 1.21509 0.84248 0.88689 1.00294 1.22691 0.95207 0.99899 0.99465 1.22579 0.97813 0.93539 1.00548 0.90387 1.22444 0.79999 0.97598 1.01878 1.48163 1.09139 1.32942 1.41941 1.16973 0.85986 0.80011 0.78873 1.90782 1.19232 1.73170 1.58006 1.22259 0.91551 1.00704 0.99647 1.21886 0.99143 0.97515 1.01062 1.22984 0.90934 1.02541 0.97499 1.46771 1.11809 1.27793 1.28486 1.21224 0.76304 0.80304 0.85936 1.93164 1.75618 1.95166 1.51539 1.93155 1.95595 1.35739 1.91172 1.73605 1.07796 1.06705 1.19554 1.21715 0.90866 0.90260 0.97797 1.21841 0.98971 0.93581 1.02418 1.20509 0.91191 0.87636 0.94692 0.96469 0.93802 0.94019 0.93268 0.92275 0.92222 0.91223 0.86597 0.81232 0.79641 0.80947 0.91634 0.89144 0.90437 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.52 55.49 0.58 -26.16 16 2 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 3 Si 0.91 22.01 29.56 -169.99 -5.03 16.99 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.15 9.86 -15.06 -0.15 -6.30 16 8 H 0.08 2.08 7.26 -52.49 -0.38 1.70 16 9 N -0.59 -14.76 3.35 -163.45 -0.55 -15.31 16 10 C 0.18 4.17 5.45 -1.92 -0.01 4.16 16 11 C -0.13 -2.36 6.54 -25.13 -0.16 -2.52 16 12 C -0.12 -2.15 2.85 -89.53 -0.26 -2.40 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 14 C 0.10 1.48 5.55 -3.76 -0.02 1.46 16 15 N -0.59 -8.97 3.00 -173.65 -0.52 -9.49 16 16 C 0.60 9.24 7.66 -12.39 -0.09 9.14 16 17 O -0.54 -9.51 16.27 5.30 0.09 -9.42 16 18 C 0.02 0.28 6.79 -82.77 -0.56 -0.28 16 19 C -0.17 -1.78 10.81 -39.37 -0.43 -2.21 16 20 C 0.00 0.00 11.33 -17.17 -0.19 -0.19 16 21 N -0.35 -3.21 3.56 -66.62 -0.24 -3.45 16 22 C 0.50 3.03 6.24 59.85 0.37 3.41 16 23 F -0.17 -1.22 17.46 2.25 0.04 -1.18 16 24 F -0.18 -1.17 17.46 2.25 0.04 -1.13 16 25 N -0.24 -2.80 8.41 33.42 0.28 -2.52 16 26 C 0.12 1.77 6.34 -3.50 -0.02 1.75 16 27 C -0.13 -2.31 5.49 -27.13 -0.15 -2.45 16 28 C 0.17 3.35 2.55 -68.29 -0.17 3.18 16 29 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 1.08 7.71 -51.93 -0.40 0.68 16 32 H 0.05 1.29 7.33 -51.93 -0.38 0.91 16 33 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.12 1.53 4.25 -69.84 -0.30 1.24 16 37 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.17 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.39 6.92 -51.93 -0.36 1.03 16 42 H 0.08 1.40 7.63 -51.93 -0.40 1.00 16 43 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -32.99 354.14 -7.47 -40.46 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.56 Total: -0.58 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.94 Total: 6.45 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.44 Total: -56.92 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.99 -7.47 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds