Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38572 * 119.96791 * 2 1 4 4 C 1.38820 * 118.07069 * 179.72632 * 3 2 1 5 5 C 1.39722 * 117.89887 * 0.53630 * 4 3 2 6 6 C 1.48148 * 120.18364 * 179.75846 * 5 4 3 7 7 O 1.21519 * 120.00001 * 359.71933 * 6 5 4 8 8 N 1.34778 * 120.00039 * 179.71848 * 6 5 4 9 9 C 1.46499 * 120.00272 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47297 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.49836 * 54.93170 * 10 9 8 12 12 C 1.52765 * 109.55978 * 294.96144 * 10 9 8 13 13 N 1.46928 * 109.00354 * 185.55139 * 12 10 9 14 14 C 1.36938 * 120.63075 * 233.58451 * 13 12 10 15 15 H 1.07993 * 120.00043 * 152.48662 * 14 13 12 16 16 C 1.38817 * 119.99954 * 332.76473 * 14 13 12 17 17 N 1.31613 * 119.99837 * 159.12843 * 16 14 13 18 18 Si 1.86807 * 120.00015 * 339.12709 * 16 14 13 19 19 H 1.48497 * 109.46724 * 93.11722 * 18 16 14 20 20 H 1.48497 * 109.46902 * 213.11593 * 18 16 14 21 21 H 1.48499 * 109.46951 * 333.11703 * 18 16 14 22 22 C 1.46924 * 118.74118 * 53.31664 * 13 12 10 23 23 C 1.53197 * 108.77250 * 306.64056 * 22 13 12 24 24 C 1.53036 * 109.49435 * 175.00104 * 10 9 8 25 25 F 1.39901 * 109.46407 * 61.29580 * 24 10 9 26 26 F 1.39899 * 109.45315 * 301.32399 * 24 10 9 27 27 N 1.32786 * 119.63073 * 359.47935 * 5 4 3 28 28 N 1.28353 * 122.02789 * 0.25357 * 27 5 4 29 29 H 1.09008 * 109.46949 * 269.97406 * 1 2 3 30 30 H 1.08997 * 109.47401 * 29.97272 * 1 2 3 31 31 H 1.08995 * 109.47513 * 149.97643 * 1 2 3 32 32 H 1.07995 * 120.96378 * 359.97438 * 3 2 1 33 33 H 1.08003 * 121.05144 * 180.28797 * 4 3 2 34 34 H 0.97006 * 119.99711 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47087 * 59.99660 * 9 8 6 36 36 H 1.08998 * 109.47029 * 300.00088 * 9 8 6 37 37 H 1.09002 * 109.50665 * 65.67327 * 12 10 9 38 38 H 1.08992 * 109.43463 * 305.39194 * 12 10 9 39 39 H 0.97003 * 119.99825 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58594 * 66.42310 * 22 13 12 41 41 H 1.08989 * 109.58860 * 186.85141 * 22 13 12 42 42 H 1.08999 * 109.49654 * 174.58184 * 23 22 13 43 43 H 1.08997 * 109.49668 * 294.68226 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1545 0.0059 5 6 4.1991 -0.1013 -0.0002 6 6 5.6767 -0.2092 0.0002 7 8 6.3594 0.7960 0.0007 8 7 6.2637 -1.4225 0.0002 9 6 7.7248 -1.5293 0.0000 10 6 8.1283 -3.0052 -0.0007 11 1 7.6547 -3.5114 -0.8419 12 6 7.6773 -3.6593 1.3040 13 7 8.1855 -5.0372 1.3491 14 6 7.3351 -6.0877 1.5688 15 1 7.5745 -7.0666 1.1805 16 6 6.1623 -5.8932 2.2856 17 7 5.1658 -6.7438 2.1604 18 14 5.9986 -4.4242 3.4279 19 1 5.3677 -3.2964 2.6964 20 1 5.1536 -4.7939 4.5917 21 1 7.3445 -4.0146 3.9035 22 6 9.6227 -5.2670 1.1481 23 6 10.0511 -4.5952 -0.1604 24 6 9.6492 -3.1188 -0.1266 25 9 10.2555 -2.4957 0.9695 26 9 10.0669 -2.4950 -1.3071 27 7 3.4496 -1.1973 -0.0007 28 7 2.1671 -1.1450 -0.0006 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6744 2.1444 -0.0004 33 1 4.1740 2.0608 0.0108 34 1 5.7187 -2.2250 -0.0006 35 1 8.1247 -1.0433 0.8899 36 1 8.1245 -1.0433 -0.8900 37 1 6.5882 -3.6700 1.3484 38 1 8.0739 -3.0957 2.1483 39 1 4.3462 -6.6076 2.6611 40 1 10.1813 -4.8370 1.9795 41 1 9.8169 -6.3378 1.0897 42 1 11.1322 -4.6754 -0.2735 43 1 9.5595 -5.0869 -0.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046937240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -53.860100 kcal Electronic energy + Delta-G solvation = -30427.702593 eV Core-core repulsion = 25951.943831 eV Total energy + Delta-G solvation = -4475.758761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.71357 -46.66262 -41.42217 -39.51453 -37.70374 -35.15885 -34.32569 -33.31610 -32.74012 -31.42928 -30.52701 -28.86725 -26.22109 -25.22618 -25.10474 -23.62171 -22.81976 -21.46000 -21.00166 -19.88325 -18.58886 -17.70604 -17.15476 -17.11546 -16.42805 -16.02075 -15.89442 -15.72122 -15.33962 -15.20468 -14.94912 -14.77242 -14.38640 -13.87016 -13.65720 -13.52218 -13.38378 -13.31811 -13.06162 -12.95904 -12.90564 -12.72766 -12.49435 -12.09882 -11.95788 -11.76178 -11.73946 -11.67211 -10.99330 -10.72896 -10.56785 -10.37903 -10.27346 -10.14443 -10.01603 -9.96467 -9.88255 -9.56264 -9.09832 -8.76130 -7.18381 -6.04551 -3.43745 0.20948 0.49937 2.49116 2.86221 3.26457 3.44135 3.44612 3.46070 3.59371 4.00846 4.08467 4.24504 4.34294 4.39053 4.44535 4.49026 4.65685 4.69948 4.73245 4.83679 5.08079 5.15384 5.16981 5.25656 5.30200 5.38494 5.51216 5.54028 5.66594 5.68761 5.79557 5.86128 5.88215 5.93689 6.10620 6.25158 6.29895 6.36377 6.43626 6.64444 7.37859 7.79235 7.99461 8.21811 8.36474 8.78502 9.59233 9.92454 11.10445 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.004270 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.508780 B = 6555.466872 C = 8455.709632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.082 3.918 3 C -0.125 4.125 4 C -0.062 4.062 5 C 0.017 3.983 6 C 0.577 3.423 7 O -0.532 6.532 8 N -0.700 5.700 9 C 0.122 3.878 10 C -0.158 4.158 11 H 0.111 0.889 12 C 0.132 3.868 13 N -0.603 5.603 14 C -0.271 4.271 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.898 5.898 18 Si 0.871 3.129 19 H -0.283 1.283 20 H -0.300 1.300 21 H -0.269 1.269 22 C 0.147 3.853 23 C -0.172 4.172 24 C 0.302 3.698 25 F -0.199 7.199 26 F -0.208 7.208 27 N -0.198 5.198 28 N -0.236 5.236 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.418 0.582 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 14.800 -6.062 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.130 4.130 6 C 0.360 3.640 7 O -0.408 6.408 8 N -0.352 5.352 9 C -0.002 4.002 10 C -0.180 4.180 11 H 0.129 0.871 12 C 0.005 3.995 13 N -0.325 5.325 14 C -0.399 4.399 15 H 0.108 0.892 16 C -0.168 4.168 17 N -0.539 5.539 18 Si 0.700 3.300 19 H -0.211 1.211 20 H -0.228 1.228 21 H -0.194 1.194 22 C 0.021 3.979 23 C -0.212 4.212 24 C 0.266 3.734 25 F -0.180 7.180 26 F -0.189 7.189 27 N -0.044 5.044 28 N -0.081 5.081 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.255 0.745 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.060 13.772 -5.987 15.326 hybrid contribution -0.312 2.163 0.676 2.287 sum -3.372 15.935 -5.311 17.132 Atomic orbital electron populations 1.20750 0.86968 1.04412 1.04034 1.23173 0.99513 0.90511 0.92911 1.22305 0.94187 1.00135 0.98793 1.22428 0.95081 0.99061 0.92523 1.22835 0.96395 0.92199 1.01551 1.17508 0.85262 0.83968 0.77275 1.90789 1.63565 1.35991 1.50501 1.45858 1.08106 1.08700 1.72492 1.21438 0.79393 0.95901 1.03491 1.22965 0.93261 0.96342 1.05423 0.87074 1.21395 0.99800 0.86148 0.92117 1.44370 1.02589 1.01958 1.83612 1.18888 1.00509 0.90485 1.29986 0.89179 1.25233 0.96238 0.97014 0.98280 1.69807 1.03972 1.37949 1.42212 0.87139 0.77844 0.83008 0.81977 1.21091 1.22800 1.19429 1.20944 0.85171 0.99570 0.92203 1.23067 1.02542 0.91579 1.03997 1.20941 0.91109 0.90283 0.71109 1.92971 1.85293 1.84800 1.54939 1.92974 1.91893 1.85102 1.48948 1.73328 0.99837 1.25937 1.05266 1.73189 1.00805 1.24426 1.09641 0.89375 0.89990 0.89455 0.82498 0.81924 0.74463 0.90281 0.90200 0.89653 0.94310 0.92467 0.94613 0.90236 0.89883 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.19 36.00 0.37 -0.31 16 2 C 0.08 0.86 6.87 -82.33 -0.57 0.30 16 3 C -0.13 -1.09 9.86 -39.24 -0.39 -1.48 16 4 C -0.06 -0.69 9.73 -38.81 -0.38 -1.06 16 5 C 0.02 0.25 6.83 -82.83 -0.57 -0.32 16 6 C 0.58 9.43 7.82 -12.19 -0.10 9.33 16 7 O -0.53 -9.40 16.39 5.35 0.09 -9.32 16 8 N -0.70 -11.59 5.32 -61.15 -0.33 -11.92 16 9 C 0.12 1.98 4.83 -4.04 -0.02 1.96 16 10 C -0.16 -2.72 2.02 -90.72 -0.18 -2.90 16 11 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 12 C 0.13 2.74 3.06 -3.93 -0.01 2.73 16 13 N -0.60 -13.48 2.78 -172.58 -0.48 -13.96 16 14 C -0.27 -7.17 10.03 -15.06 -0.15 -7.32 16 15 H 0.09 2.52 8.05 -52.49 -0.42 2.10 16 16 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 17 N -0.90 -26.64 13.97 55.49 0.78 -25.87 16 18 Si 0.87 21.89 24.35 -169.99 -4.14 17.75 16 19 H -0.28 -6.89 6.63 56.52 0.37 -6.51 16 20 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 21 H -0.27 -6.72 6.64 56.52 0.38 -6.35 16 22 C 0.15 2.70 6.32 -3.71 -0.02 2.68 16 23 C -0.17 -2.66 5.62 -26.60 -0.15 -2.81 16 24 C 0.30 4.97 1.63 -26.69 -0.04 4.93 16 25 F -0.20 -3.48 15.73 2.25 0.04 -3.45 16 26 F -0.21 -3.33 16.40 2.25 0.04 -3.29 16 27 N -0.20 -3.24 10.75 33.32 0.36 -2.88 16 28 N -0.24 -3.52 11.43 33.62 0.38 -3.14 16 29 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.16 1.51 7.72 -52.48 -0.41 1.10 16 34 H 0.42 7.14 7.05 -40.82 -0.29 6.85 16 35 H 0.08 1.33 7.97 -51.93 -0.41 0.92 16 36 H 0.08 1.24 7.63 -51.93 -0.40 0.84 16 37 H 0.09 1.93 3.69 -51.93 -0.19 1.74 16 38 H 0.04 0.84 6.86 -51.93 -0.36 0.48 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.04 0.65 7.92 -51.93 -0.41 0.24 16 41 H 0.08 1.40 7.93 -51.94 -0.41 0.99 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -32.73 357.53 -5.62 -38.34 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.44 Total: 5.79 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.30 Total: 6.55 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.71 Total: -57.77 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.07 Total: -6.74 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.73 -5.62 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046937240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.516 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds