Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38572 * 119.96791 * 2 1 4 4 C 1.38820 * 118.07069 * 179.72632 * 3 2 1 5 5 C 1.39722 * 117.89887 * 0.53630 * 4 3 2 6 6 C 1.48148 * 120.18364 * 179.75846 * 5 4 3 7 7 O 1.21519 * 120.00001 * 359.71933 * 6 5 4 8 8 N 1.34778 * 120.00039 * 179.71848 * 6 5 4 9 9 C 1.46499 * 120.00272 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47297 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.49836 * 54.93170 * 10 9 8 12 12 C 1.52765 * 109.55978 * 294.96144 * 10 9 8 13 13 N 1.46928 * 109.00354 * 185.55139 * 12 10 9 14 14 C 1.36938 * 120.63075 * 233.58451 * 13 12 10 15 15 H 1.07993 * 120.00043 * 152.48662 * 14 13 12 16 16 C 1.38817 * 119.99954 * 332.76473 * 14 13 12 17 17 N 1.31613 * 119.99837 * 159.12843 * 16 14 13 18 18 Si 1.86807 * 120.00015 * 339.12709 * 16 14 13 19 19 H 1.48497 * 109.46724 * 93.11722 * 18 16 14 20 20 H 1.48497 * 109.46902 * 213.11593 * 18 16 14 21 21 H 1.48499 * 109.46951 * 333.11703 * 18 16 14 22 22 C 1.46924 * 118.74118 * 53.31664 * 13 12 10 23 23 C 1.53197 * 108.77250 * 306.64056 * 22 13 12 24 24 C 1.53036 * 109.49435 * 175.00104 * 10 9 8 25 25 F 1.39901 * 109.46407 * 61.29580 * 24 10 9 26 26 F 1.39899 * 109.45315 * 301.32399 * 24 10 9 27 27 N 1.32786 * 119.63073 * 359.47935 * 5 4 3 28 28 N 1.28353 * 122.02789 * 0.25357 * 27 5 4 29 29 H 1.09008 * 109.46949 * 269.97406 * 1 2 3 30 30 H 1.08997 * 109.47401 * 29.97272 * 1 2 3 31 31 H 1.08995 * 109.47513 * 149.97643 * 1 2 3 32 32 H 1.07995 * 120.96378 * 359.97438 * 3 2 1 33 33 H 1.08003 * 121.05144 * 180.28797 * 4 3 2 34 34 H 0.97006 * 119.99711 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47087 * 59.99660 * 9 8 6 36 36 H 1.08998 * 109.47029 * 300.00088 * 9 8 6 37 37 H 1.09002 * 109.50665 * 65.67327 * 12 10 9 38 38 H 1.08992 * 109.43463 * 305.39194 * 12 10 9 39 39 H 0.97003 * 119.99825 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58594 * 66.42310 * 22 13 12 41 41 H 1.08989 * 109.58860 * 186.85141 * 22 13 12 42 42 H 1.08999 * 109.49654 * 174.58184 * 23 22 13 43 43 H 1.08997 * 109.49668 * 294.68226 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1545 0.0059 5 6 4.1991 -0.1013 -0.0002 6 6 5.6767 -0.2092 0.0002 7 8 6.3594 0.7960 0.0007 8 7 6.2637 -1.4225 0.0002 9 6 7.7248 -1.5293 0.0000 10 6 8.1283 -3.0052 -0.0007 11 1 7.6547 -3.5114 -0.8419 12 6 7.6773 -3.6593 1.3040 13 7 8.1855 -5.0372 1.3491 14 6 7.3351 -6.0877 1.5688 15 1 7.5745 -7.0666 1.1805 16 6 6.1623 -5.8932 2.2856 17 7 5.1658 -6.7438 2.1604 18 14 5.9986 -4.4242 3.4279 19 1 5.3677 -3.2964 2.6964 20 1 5.1536 -4.7939 4.5917 21 1 7.3445 -4.0146 3.9035 22 6 9.6227 -5.2670 1.1481 23 6 10.0511 -4.5952 -0.1604 24 6 9.6492 -3.1188 -0.1266 25 9 10.2555 -2.4957 0.9695 26 9 10.0669 -2.4950 -1.3071 27 7 3.4496 -1.1973 -0.0007 28 7 2.1671 -1.1450 -0.0006 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6744 2.1444 -0.0004 33 1 4.1740 2.0608 0.0108 34 1 5.7187 -2.2250 -0.0006 35 1 8.1247 -1.0433 0.8899 36 1 8.1245 -1.0433 -0.8900 37 1 6.5882 -3.6700 1.3484 38 1 8.0739 -3.0957 2.1483 39 1 4.3462 -6.6076 2.6611 40 1 10.1813 -4.8370 1.9795 41 1 9.8169 -6.3378 1.0897 42 1 11.1322 -4.6754 -0.2735 43 1 9.5595 -5.0869 -0.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046937240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = -77.345033 kcal Electronic energy + Delta-G solvation = -30428.720976 eV Core-core repulsion = 25951.943831 eV Total energy + Delta-G solvation = -4476.777144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.04952 -47.99550 -42.38972 -40.75473 -39.26724 -36.56433 -35.20702 -34.57228 -34.23548 -32.83465 -32.27093 -29.68640 -27.56366 -26.97084 -26.17529 -24.73160 -24.12806 -22.92864 -22.23234 -21.38458 -19.78357 -19.03846 -18.65766 -18.47512 -17.74580 -17.38382 -16.98610 -16.91964 -16.70062 -16.61789 -16.32436 -15.87017 -15.83464 -15.23147 -15.02313 -14.79905 -14.61317 -14.54334 -14.31995 -14.25201 -14.23586 -13.80746 -13.64557 -13.48732 -13.35489 -13.24655 -13.20372 -12.67600 -12.63620 -12.34102 -12.22201 -11.86839 -11.69494 -11.53766 -11.42422 -11.25344 -10.92833 -10.87774 -10.81243 -10.40240 -9.09886 -8.20975 -5.54450 -0.72465 -0.34254 1.23632 1.35678 1.37599 1.41717 1.67779 2.34331 2.44185 2.56812 2.69921 2.90755 3.05553 3.12899 3.25009 3.34790 3.38512 3.44597 3.61605 3.76447 3.77707 3.91486 3.94455 4.07483 4.30799 4.41875 4.46069 4.50287 4.55373 4.61710 4.66154 4.73147 4.74041 4.84796 4.91440 4.92560 4.95744 5.05702 5.20394 5.26979 5.80016 6.08239 6.09723 6.71837 6.80680 7.41530 7.53021 7.91941 8.97662 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.004270 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.508780 B = 6555.466872 C = 8455.709632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.080 3.920 3 C -0.100 4.100 4 C -0.065 4.065 5 C -0.006 4.006 6 C 0.577 3.423 7 O -0.550 6.550 8 N -0.705 5.705 9 C 0.127 3.873 10 C -0.149 4.149 11 H 0.116 0.884 12 C 0.133 3.867 13 N -0.616 5.616 14 C -0.249 4.249 15 H 0.070 0.930 16 C -0.017 4.017 17 N -0.943 5.943 18 Si 0.922 3.078 19 H -0.278 1.278 20 H -0.312 1.312 21 H -0.265 1.265 22 C 0.142 3.858 23 C -0.162 4.162 24 C 0.305 3.695 25 F -0.204 7.204 26 F -0.201 7.201 27 N -0.239 5.239 28 N -0.280 5.280 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.211 0.789 33 H 0.181 0.819 34 H 0.414 0.586 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 17.500 -6.803 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.094 4.094 5 C -0.153 4.153 6 C 0.361 3.639 7 O -0.428 6.428 8 N -0.356 5.356 9 C 0.003 3.997 10 C -0.170 4.170 11 H 0.134 0.866 12 C 0.007 3.993 13 N -0.339 5.339 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.213 4.213 17 N -0.588 5.588 18 Si 0.752 3.248 19 H -0.205 1.205 20 H -0.241 1.241 21 H -0.190 1.190 22 C 0.017 3.983 23 C -0.202 4.202 24 C 0.268 3.732 25 F -0.185 7.185 26 F -0.182 7.182 27 N -0.084 5.084 28 N -0.124 5.124 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.199 0.801 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.983 16.492 -6.743 18.066 hybrid contribution -0.337 1.359 0.854 1.640 sum -3.320 17.852 -5.889 19.089 Atomic orbital electron populations 1.20938 0.83987 1.05880 1.05170 1.23902 1.01393 0.90114 0.90888 1.22871 0.93060 1.01482 0.95442 1.22728 0.96472 0.98112 0.92071 1.22762 0.95331 0.93666 1.03561 1.17792 0.86176 0.83459 0.76447 1.90759 1.64257 1.36273 1.51474 1.45931 1.08128 1.08847 1.72709 1.21383 0.79497 0.95125 1.03675 1.22785 0.94328 0.96616 1.03298 0.86617 1.21251 0.98623 0.85568 0.93829 1.44496 1.04071 1.01552 1.83808 1.18880 1.00356 0.90809 1.27734 0.91275 1.25685 0.96469 0.99114 1.00029 1.69909 1.04669 1.40238 1.43989 0.86303 0.77551 0.80958 0.80003 1.20499 1.24114 1.18994 1.21132 0.82606 1.00580 0.93985 1.22983 1.04674 0.90257 1.02250 1.20897 0.90210 0.90912 0.71138 1.92969 1.85255 1.84981 1.55284 1.92989 1.91703 1.85047 1.48480 1.73206 1.00877 1.27297 1.07009 1.73082 1.00422 1.27178 1.11760 0.88142 0.86256 0.90277 0.77196 0.80121 0.74952 0.90862 0.89134 0.91689 0.94875 0.92891 0.94036 0.89621 0.86583 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.19 71.23 0.73 -0.30 16 2 C 0.08 1.53 6.87 42.59 0.29 1.83 16 3 C -0.10 -1.39 9.86 22.49 0.22 -1.17 16 4 C -0.07 -1.33 9.73 22.77 0.22 -1.10 16 5 C -0.01 -0.18 6.83 41.99 0.29 0.11 16 6 C 0.58 18.96 7.82 86.88 0.68 19.64 16 7 O -0.55 -19.22 16.39 -3.78 -0.06 -19.28 16 8 N -0.71 -23.64 5.32 -465.67 -2.48 -26.12 16 9 C 0.13 4.06 4.83 86.38 0.42 4.48 16 10 C -0.15 -4.98 2.02 -10.86 -0.02 -5.00 16 11 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 12 C 0.13 5.50 3.06 86.22 0.26 5.77 16 13 N -0.62 -27.25 2.78 -699.93 -1.94 -29.19 16 14 C -0.25 -13.32 10.03 84.03 0.84 -12.48 16 15 H 0.07 3.96 8.05 -2.91 -0.02 3.93 16 16 C -0.02 -0.95 5.23 84.86 0.44 -0.51 16 17 N -0.94 -57.86 13.97 21.65 0.30 -57.55 16 18 Si 0.92 46.55 24.35 68.60 1.67 48.22 16 19 H -0.28 -13.61 6.63 99.48 0.66 -12.96 16 20 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 21 H -0.27 -13.01 6.64 99.48 0.66 -12.35 16 22 C 0.14 4.95 6.32 86.36 0.55 5.49 16 23 C -0.16 -4.56 5.62 30.68 0.17 -4.39 16 24 C 0.31 9.36 1.63 30.62 0.05 9.41 16 25 F -0.20 -6.69 15.73 44.97 0.71 -5.98 16 26 F -0.20 -5.89 16.40 44.97 0.74 -5.16 16 27 N -0.24 -8.04 10.75 -48.49 -0.52 -8.56 16 28 N -0.28 -8.42 11.43 -47.54 -0.54 -8.96 16 29 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.12 0.33 8.09 -2.39 -0.02 0.31 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.18 2.90 7.72 -2.91 -0.02 2.88 16 34 H 0.41 14.65 7.05 -92.70 -0.65 14.00 16 35 H 0.07 2.43 7.97 -2.39 -0.02 2.41 16 36 H 0.09 2.71 7.63 -2.39 -0.02 2.69 16 37 H 0.07 2.97 3.69 -2.39 -0.01 2.96 16 38 H 0.03 1.42 6.86 -2.39 -0.02 1.40 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.04 1.43 7.92 -2.39 -0.02 1.41 16 41 H 0.09 2.88 7.93 -2.39 -0.02 2.86 16 42 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -73.99 357.53 3.33 -70.66 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.32 Total: 20.15 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.14 Total: 21.77 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -5.18 Total: -130.38 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 1.45 Total: -11.14 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.67 Total: 48.22 kcal Total: -73.99 3.33 -70.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046937240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.687 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds