Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38567 * 119.96962 * 2 1 4 4 C 1.38829 * 118.06920 * 180.02562 * 3 2 1 5 5 C 1.39716 * 117.89710 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18029 * 180.02562 * 5 4 3 7 7 O 1.21510 * 119.99941 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99777 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99940 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47134 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.50069 * 304.99813 * 10 9 8 12 12 C 1.53197 * 109.49887 * 65.06481 * 10 9 8 13 13 N 1.46933 * 108.77161 * 174.55047 * 12 10 9 14 14 C 1.36936 * 120.59873 * 126.42248 * 13 12 10 15 15 H 1.07992 * 120.00717 * 331.84293 * 14 13 12 16 16 C 1.38812 * 119.99679 * 151.85118 * 14 13 12 17 17 N 1.31628 * 120.00191 * 343.07386 * 16 14 13 18 18 Si 1.86802 * 120.00394 * 163.08210 * 16 14 13 19 19 H 1.48497 * 109.46832 * 59.99281 * 18 16 14 20 20 H 1.48490 * 109.47428 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46911 * 299.99608 * 18 16 14 22 22 C 1.46926 * 118.76732 * 306.44219 * 13 12 10 23 23 C 1.53197 * 108.77387 * 53.59100 * 22 13 12 24 24 C 1.53040 * 109.31021 * 305.36527 * 23 22 13 25 25 F 1.39902 * 109.46175 * 301.34498 * 24 23 22 26 26 F 1.39902 * 109.44738 * 181.37853 * 24 23 22 27 27 N 1.32783 * 119.63438 * 0.28137 * 5 4 3 28 28 N 1.28348 * 122.03048 * 359.39486 * 27 5 4 29 29 H 1.09002 * 109.47051 * 90.00385 * 1 2 3 30 30 H 1.09001 * 109.47229 * 210.00356 * 1 2 3 31 31 H 1.09004 * 109.47041 * 330.00668 * 1 2 3 32 32 H 1.08000 * 120.96475 * 0.02562 * 3 2 1 33 33 H 1.07994 * 121.04658 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00454 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47000 * 299.99680 * 9 8 6 36 36 H 1.08999 * 109.46999 * 59.99353 * 9 8 6 37 37 H 1.08996 * 109.58367 * 294.37020 * 12 10 9 38 38 H 1.09000 * 109.58358 * 54.80046 * 12 10 9 39 39 H 0.96993 * 120.00149 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.59053 * 293.80309 * 22 13 12 41 41 H 1.08998 * 109.58608 * 173.36925 * 22 13 12 42 42 H 1.08993 * 109.49888 * 185.41535 * 23 22 13 43 43 H 1.09002 * 109.52410 * 65.32879 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1991 -0.1014 -0.0005 6 6 5.6767 -0.2095 -0.0005 7 8 6.3594 0.7957 -0.0001 8 7 6.2636 -1.4228 -0.0010 9 6 7.7248 -1.5297 -0.0004 10 6 8.1281 -3.0055 -0.0005 11 1 7.6552 -3.5120 0.8409 12 6 7.6762 -3.6591 -1.3103 13 7 8.1843 -5.0372 -1.3510 14 6 7.3336 -6.0875 -1.5707 15 1 6.2977 -6.0146 -1.2744 16 6 7.8029 -7.2461 -2.1743 17 7 8.9440 -7.2308 -2.8302 18 14 6.8149 -8.8271 -2.0560 19 1 5.4768 -8.6213 -2.6660 20 1 7.5269 -9.9110 -2.7792 21 1 6.6555 -9.2054 -0.6288 22 6 9.6216 -5.2670 -1.1512 23 6 10.0511 -4.5957 0.1572 24 6 9.6492 -3.1194 0.1241 25 9 10.2546 -2.4959 -0.9722 26 9 10.0680 -2.4961 1.3046 27 7 3.4496 -1.1975 -0.0056 28 7 2.1672 -1.1451 0.0008 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6745 2.1444 0.0004 33 1 4.1741 2.0606 -0.0002 34 1 5.7187 -2.2252 -0.0010 35 1 8.1250 -1.0433 -0.8900 36 1 8.1242 -1.0442 0.8900 37 1 6.5872 -3.6690 -1.3569 38 1 8.0752 -3.0979 -2.1553 39 1 9.2717 -8.0402 -3.2523 40 1 10.1796 -4.8369 -1.9828 41 1 9.8157 -6.3380 -1.0931 42 1 11.1322 -4.6760 0.2695 43 1 9.5604 -5.0876 0.9971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046937241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -60.923771 kcal Electronic energy + Delta-G solvation = -29805.235256 eV Core-core repulsion = 25329.170191 eV Total energy + Delta-G solvation = -4476.065065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.52740 -46.47779 -41.50183 -39.53406 -37.37409 -35.14563 -34.40445 -33.39473 -32.67093 -30.95039 -30.21098 -28.87048 -26.03536 -25.26851 -25.02629 -23.56765 -22.46046 -21.58413 -20.99786 -19.60138 -18.60853 -17.77396 -17.01806 -16.79270 -16.31080 -16.00652 -15.95361 -15.47289 -15.27995 -15.24035 -14.89195 -14.70301 -14.12873 -13.83169 -13.60680 -13.50150 -13.31888 -13.24391 -13.09164 -12.81880 -12.81082 -12.77916 -12.21106 -11.81634 -11.66428 -11.60588 -11.55103 -11.20438 -10.79241 -10.64712 -10.61919 -10.52332 -10.30374 -10.09373 -10.06707 -10.03474 -9.90818 -9.66216 -9.11320 -8.57899 -6.86791 -5.90581 -3.35283 0.12979 0.41261 2.43575 2.82338 3.34770 3.36837 3.40747 3.41780 3.52070 3.98176 4.14252 4.21122 4.33348 4.40002 4.57550 4.60244 4.63748 4.70652 4.90553 5.00827 5.08583 5.19851 5.29248 5.30085 5.41412 5.43494 5.53035 5.59462 5.63114 5.78498 5.89755 5.97155 6.16284 6.28027 6.28865 6.36090 6.46138 6.70740 7.12137 7.34704 7.46682 7.70139 7.96489 8.26356 8.30222 9.06505 9.68495 10.23678 11.18698 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.003395 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.047749 B = 8246.128871 C =10589.200087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.082 3.918 3 C -0.124 4.124 4 C -0.062 4.062 5 C 0.019 3.981 6 C 0.576 3.424 7 O -0.531 6.531 8 N -0.698 5.698 9 C 0.123 3.877 10 C -0.156 4.156 11 H 0.104 0.896 12 C 0.152 3.848 13 N -0.589 5.589 14 C -0.262 4.262 15 H 0.070 0.930 16 C 0.007 3.993 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.170 3.830 23 C -0.179 4.179 24 C 0.301 3.699 25 F -0.199 7.199 26 F -0.213 7.213 27 N -0.201 5.201 28 N -0.238 5.238 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.257 0.743 40 H 0.032 0.968 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 15.381 7.151 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.061 4.061 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.127 4.127 6 C 0.358 3.642 7 O -0.407 6.407 8 N -0.349 5.349 9 C -0.001 4.001 10 C -0.178 4.178 11 H 0.122 0.878 12 C 0.024 3.976 13 N -0.311 5.311 14 C -0.391 4.391 15 H 0.088 0.912 16 C -0.192 4.192 17 N -0.544 5.544 18 Si 0.735 3.265 19 H -0.207 1.207 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.044 3.956 23 C -0.219 4.219 24 C 0.264 3.736 25 F -0.180 7.180 26 F -0.195 7.195 27 N -0.047 5.047 28 N -0.083 5.083 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.785 14.297 7.027 19.239 hybrid contribution -0.463 0.531 0.051 0.706 sum -11.249 14.828 7.078 19.912 Atomic orbital electron populations 1.20753 0.86993 1.04411 1.04031 1.23144 0.99467 0.90506 0.92972 1.22318 0.94220 1.00165 0.98633 1.22450 0.95067 0.99188 0.92375 1.22843 0.96425 0.92125 1.01302 1.17507 0.85163 0.84080 0.77448 1.90803 1.63524 1.36061 1.50334 1.45820 1.08177 1.08421 1.72468 1.21444 0.79047 0.96214 1.03380 1.22992 0.93448 0.95941 1.05399 0.87779 1.20936 0.98303 0.87157 0.91163 1.44076 1.04036 1.00221 1.82757 1.19150 0.93340 0.92755 1.33828 0.91207 1.25085 0.97718 0.99672 0.96744 1.70010 1.21828 1.27733 1.34823 0.86324 0.79484 0.82895 0.77809 1.20697 1.21587 1.20846 1.20844 0.83979 1.01263 0.89509 1.23276 1.02154 0.91146 1.05286 1.21022 0.91005 0.90662 0.70886 1.92967 1.85367 1.84741 1.54922 1.92957 1.91947 1.85276 1.49271 1.73265 0.99800 1.26022 1.05617 1.73150 1.00851 1.24479 1.09835 0.89359 0.89521 0.89984 0.82506 0.81910 0.74701 0.90193 0.90569 0.91369 0.94936 0.93311 0.94949 0.88122 0.90526 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.19 36.01 0.37 -0.15 16 2 C 0.08 0.72 6.87 -82.32 -0.57 0.16 16 3 C -0.12 -0.90 9.86 -39.24 -0.39 -1.29 16 4 C -0.06 -0.59 9.73 -38.81 -0.38 -0.97 16 5 C 0.02 0.25 6.83 -82.83 -0.57 -0.32 16 6 C 0.58 8.36 7.82 -12.19 -0.10 8.27 16 7 O -0.53 -8.81 16.39 5.36 0.09 -8.72 16 8 N -0.70 -10.00 5.32 -61.15 -0.33 -10.32 16 9 C 0.12 1.88 4.83 -4.04 -0.02 1.86 16 10 C -0.16 -2.61 2.03 -90.50 -0.18 -2.80 16 11 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.15 2.99 5.40 -3.70 -0.02 2.97 16 13 N -0.59 -13.89 2.99 -172.32 -0.52 -14.41 16 14 C -0.26 -6.79 9.58 -15.06 -0.14 -6.94 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 16 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 17 N -0.90 -25.13 11.20 55.49 0.62 -24.50 16 18 Si 0.91 20.93 29.59 -169.99 -5.03 15.90 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.17 3.86 5.10 -3.71 -0.02 3.84 16 23 C -0.18 -3.29 5.62 -26.61 -0.15 -3.44 16 24 C 0.30 5.35 1.63 -26.69 -0.04 5.30 16 25 F -0.20 -3.81 15.73 2.25 0.04 -3.77 16 26 F -0.21 -3.68 16.41 2.25 0.04 -3.64 16 27 N -0.20 -2.75 10.75 33.32 0.36 -2.39 16 28 N -0.24 -2.99 11.43 33.63 0.38 -2.61 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 33 H 0.16 1.32 7.72 -52.49 -0.41 0.91 16 34 H 0.42 5.76 7.06 -40.82 -0.29 5.47 16 35 H 0.08 1.29 7.97 -51.93 -0.41 0.88 16 36 H 0.08 1.16 7.63 -51.93 -0.40 0.77 16 37 H 0.07 1.29 7.14 -51.93 -0.37 0.92 16 38 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 41 H 0.10 2.52 6.06 -51.93 -0.31 2.20 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -31.32 364.00 -6.67 -37.99 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.52 Total: 4.39 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.29 Total: 6.60 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.52 Total: -54.24 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.07 Total: -7.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.32 -6.67 -37.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046937241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.938 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds