Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38567 * 119.96962 * 2 1 4 4 C 1.38829 * 118.06920 * 180.02562 * 3 2 1 5 5 C 1.39716 * 117.89710 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18029 * 180.02562 * 5 4 3 7 7 O 1.21510 * 119.99941 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99777 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99940 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47134 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.50069 * 304.99813 * 10 9 8 12 12 C 1.53197 * 109.49887 * 65.06481 * 10 9 8 13 13 N 1.46933 * 108.77161 * 174.55047 * 12 10 9 14 14 C 1.36936 * 120.59873 * 126.42248 * 13 12 10 15 15 H 1.07992 * 120.00717 * 331.84293 * 14 13 12 16 16 C 1.38812 * 119.99679 * 151.85118 * 14 13 12 17 17 N 1.31628 * 120.00191 * 343.07386 * 16 14 13 18 18 Si 1.86802 * 120.00394 * 163.08210 * 16 14 13 19 19 H 1.48497 * 109.46832 * 59.99281 * 18 16 14 20 20 H 1.48490 * 109.47428 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46911 * 299.99608 * 18 16 14 22 22 C 1.46926 * 118.76732 * 306.44219 * 13 12 10 23 23 C 1.53197 * 108.77387 * 53.59100 * 22 13 12 24 24 C 1.53040 * 109.31021 * 305.36527 * 23 22 13 25 25 F 1.39902 * 109.46175 * 301.34498 * 24 23 22 26 26 F 1.39902 * 109.44738 * 181.37853 * 24 23 22 27 27 N 1.32783 * 119.63438 * 0.28137 * 5 4 3 28 28 N 1.28348 * 122.03048 * 359.39486 * 27 5 4 29 29 H 1.09002 * 109.47051 * 90.00385 * 1 2 3 30 30 H 1.09001 * 109.47229 * 210.00356 * 1 2 3 31 31 H 1.09004 * 109.47041 * 330.00668 * 1 2 3 32 32 H 1.08000 * 120.96475 * 0.02562 * 3 2 1 33 33 H 1.07994 * 121.04658 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00454 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47000 * 299.99680 * 9 8 6 36 36 H 1.08999 * 109.46999 * 59.99353 * 9 8 6 37 37 H 1.08996 * 109.58367 * 294.37020 * 12 10 9 38 38 H 1.09000 * 109.58358 * 54.80046 * 12 10 9 39 39 H 0.96993 * 120.00149 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.59053 * 293.80309 * 22 13 12 41 41 H 1.08998 * 109.58608 * 173.36925 * 22 13 12 42 42 H 1.08993 * 109.49888 * 185.41535 * 23 22 13 43 43 H 1.09002 * 109.52410 * 65.32879 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1991 -0.1014 -0.0005 6 6 5.6767 -0.2095 -0.0005 7 8 6.3594 0.7957 -0.0001 8 7 6.2636 -1.4228 -0.0010 9 6 7.7248 -1.5297 -0.0004 10 6 8.1281 -3.0055 -0.0005 11 1 7.6552 -3.5120 0.8409 12 6 7.6762 -3.6591 -1.3103 13 7 8.1843 -5.0372 -1.3510 14 6 7.3336 -6.0875 -1.5707 15 1 6.2977 -6.0146 -1.2744 16 6 7.8029 -7.2461 -2.1743 17 7 8.9440 -7.2308 -2.8302 18 14 6.8149 -8.8271 -2.0560 19 1 5.4768 -8.6213 -2.6660 20 1 7.5269 -9.9110 -2.7792 21 1 6.6555 -9.2054 -0.6288 22 6 9.6216 -5.2670 -1.1512 23 6 10.0511 -4.5957 0.1572 24 6 9.6492 -3.1194 0.1241 25 9 10.2546 -2.4959 -0.9722 26 9 10.0680 -2.4961 1.3046 27 7 3.4496 -1.1975 -0.0056 28 7 2.1672 -1.1451 0.0008 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6745 2.1444 0.0004 33 1 4.1741 2.0606 -0.0002 34 1 5.7187 -2.2252 -0.0010 35 1 8.1250 -1.0433 -0.8900 36 1 8.1242 -1.0442 0.8900 37 1 6.5872 -3.6690 -1.3569 38 1 8.0752 -3.0979 -2.1553 39 1 9.2717 -8.0402 -3.2523 40 1 10.1796 -4.8369 -1.9828 41 1 9.8157 -6.3380 -1.0931 42 1 11.1322 -4.6760 0.2695 43 1 9.5604 -5.0876 0.9971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046937241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -81.466687 kcal Electronic energy + Delta-G solvation = -29806.126064 eV Core-core repulsion = 25329.170191 eV Total energy + Delta-G solvation = -4476.955873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.00393 -47.95495 -42.32393 -40.65865 -38.97615 -36.54034 -35.16527 -34.36693 -34.17325 -32.40909 -31.99477 -29.58533 -27.37624 -26.95138 -26.04637 -24.44373 -23.98329 -23.07163 -22.13418 -21.18428 -19.71241 -18.88090 -18.49938 -18.30576 -17.64542 -17.08806 -17.07279 -16.75022 -16.62121 -16.53130 -16.15260 -15.79082 -15.53259 -15.36231 -14.87842 -14.72896 -14.56610 -14.36712 -14.27253 -14.20139 -13.81931 -13.72344 -13.29202 -13.21521 -13.20161 -13.07198 -13.03806 -12.61082 -12.56926 -12.32197 -12.20919 -11.92456 -11.67203 -11.50676 -11.36679 -11.18756 -10.86130 -10.84071 -10.57233 -10.30699 -8.80853 -7.91814 -5.38734 -0.66635 -0.29503 1.45671 1.50925 1.52287 1.59079 1.73977 2.48993 2.50528 2.65274 2.79987 3.14287 3.20311 3.23681 3.31090 3.48558 3.49897 3.58170 3.68817 3.83544 3.88946 3.98296 4.04647 4.21463 4.46106 4.53771 4.56277 4.58964 4.67048 4.75775 4.77564 4.82335 4.86944 4.95757 4.99990 5.04380 5.15722 5.29227 5.30996 5.58298 5.65579 6.20749 6.33590 6.83666 7.08376 7.45953 7.75108 8.27520 9.16070 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.003395 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.047749 B = 8246.128871 C =10589.200087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.081 3.919 3 C -0.102 4.102 4 C -0.068 4.068 5 C -0.001 4.001 6 C 0.577 3.423 7 O -0.556 6.556 8 N -0.697 5.697 9 C 0.133 3.867 10 C -0.141 4.141 11 H 0.117 0.883 12 C 0.155 3.845 13 N -0.605 5.605 14 C -0.268 4.268 15 H 0.075 0.925 16 C -0.043 4.043 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.275 1.275 22 C 0.177 3.823 23 C -0.169 4.169 24 C 0.303 3.697 25 F -0.208 7.208 26 F -0.205 7.205 27 N -0.230 5.230 28 N -0.276 5.276 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.206 0.794 33 H 0.177 0.823 34 H 0.418 0.582 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.006 0.994 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 17.027 8.453 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.062 4.062 3 C -0.131 4.131 4 C -0.096 4.096 5 C -0.148 4.148 6 C 0.361 3.639 7 O -0.434 6.434 8 N -0.348 5.348 9 C 0.009 3.991 10 C -0.162 4.162 11 H 0.135 0.865 12 C 0.028 3.972 13 N -0.327 5.327 14 C -0.397 4.397 15 H 0.092 0.908 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.201 1.201 22 C 0.051 3.949 23 C -0.208 4.208 24 C 0.266 3.734 25 F -0.189 7.189 26 F -0.186 7.186 27 N -0.076 5.076 28 N -0.120 5.120 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.223 0.777 33 H 0.194 0.806 34 H 0.256 0.744 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.092 15.952 8.349 22.261 hybrid contribution 0.149 0.121 -0.375 0.421 sum -12.943 16.073 7.974 22.123 Atomic orbital electron populations 1.20927 0.84159 1.05773 1.05157 1.23826 1.01258 0.90100 0.91012 1.22836 0.93099 1.01531 0.95624 1.22708 0.96431 0.98338 0.92139 1.22674 0.95155 0.93530 1.03430 1.17800 0.86137 0.83500 0.76469 1.90776 1.64390 1.36657 1.51569 1.45781 1.07661 1.08780 1.72554 1.21255 0.79824 0.94857 1.03162 1.22782 0.92866 0.96712 1.03863 0.86525 1.20947 0.98584 0.85354 0.92281 1.44294 1.04155 1.01260 1.83014 1.19492 0.93873 0.93493 1.32881 0.90759 1.25801 0.98786 1.02440 0.96898 1.70160 1.23475 1.28026 1.36181 0.85344 0.78056 0.79209 0.77842 1.20291 1.22220 1.20063 1.20581 0.83563 0.99889 0.90835 1.23102 1.03465 0.91269 1.02994 1.20972 0.91391 0.90168 0.70861 1.92957 1.85576 1.84855 1.55501 1.92972 1.91903 1.85039 1.48663 1.73162 1.00668 1.26902 1.06866 1.73063 1.00470 1.26836 1.11663 0.88102 0.90145 0.86667 0.77654 0.80587 0.74435 0.91185 0.90010 0.90733 0.96363 0.93864 0.97564 0.90704 0.88678 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.19 71.24 0.73 0.04 16 2 C 0.08 1.23 6.87 42.59 0.29 1.52 16 3 C -0.10 -1.12 9.86 22.49 0.22 -0.90 16 4 C -0.07 -1.17 9.73 22.77 0.22 -0.95 16 5 C 0.00 -0.02 6.83 41.99 0.29 0.26 16 6 C 0.58 16.74 7.82 86.88 0.68 17.42 16 7 O -0.56 -18.34 16.39 -3.75 -0.06 -18.40 16 8 N -0.70 -19.92 5.32 -465.68 -2.48 -22.40 16 9 C 0.13 4.02 4.83 86.38 0.42 4.44 16 10 C -0.14 -4.62 2.03 -10.72 -0.02 -4.64 16 11 H 0.12 3.59 8.14 -2.38 -0.02 3.57 16 12 C 0.15 6.15 5.40 86.36 0.47 6.61 16 13 N -0.60 -28.88 2.99 -699.09 -2.09 -30.98 16 14 C -0.27 -14.00 9.58 84.03 0.81 -13.19 16 15 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 16 C -0.04 -2.32 4.92 84.86 0.42 -1.91 16 17 N -0.93 -53.45 11.20 21.65 0.24 -53.21 16 18 Si 0.97 43.40 29.59 68.60 2.03 45.43 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C 0.18 8.21 5.10 86.36 0.44 8.65 16 23 C -0.17 -6.09 5.62 30.67 0.17 -5.91 16 24 C 0.30 10.48 1.63 30.62 0.05 10.53 16 25 F -0.21 -7.91 15.73 44.97 0.71 -7.20 16 26 F -0.20 -6.67 16.41 44.97 0.74 -5.93 16 27 N -0.23 -6.30 10.75 -48.49 -0.52 -6.82 16 28 N -0.28 -6.73 11.43 -47.53 -0.54 -7.27 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.03 8.09 -2.38 -0.02 0.01 16 32 H 0.21 0.17 8.06 -2.91 -0.02 0.15 16 33 H 0.18 2.48 7.72 -2.91 -0.02 2.46 16 34 H 0.42 11.63 7.06 -92.71 -0.65 10.97 16 35 H 0.07 2.27 7.97 -2.39 -0.02 2.25 16 36 H 0.08 2.42 7.63 -2.39 -0.02 2.40 16 37 H 0.07 2.84 7.14 -2.39 -0.02 2.82 16 38 H 0.02 0.79 7.92 -2.39 -0.02 0.77 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.01 0.32 7.92 -2.39 -0.02 0.30 16 41 H 0.07 3.86 6.06 -2.39 -0.01 3.85 16 42 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -69.72 364.00 3.60 -66.12 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.40 Total: 18.70 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 5.17 Total: 21.96 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.39 Total: -120.68 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 1.45 Total: -13.14 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.72 3.60 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046937241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.346 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds