Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31925 * 120.17510 * 2 1 4 4 N 1.28279 * 122.33059 * 179.97438 * 3 2 1 5 5 C 1.31911 * 122.51588 * 359.97438 * 4 3 2 6 6 C 1.38506 * 119.96933 * 359.97438 * 5 4 3 7 7 C 1.39728 * 120.17351 * 179.97438 * 2 1 3 8 8 C 1.48128 * 121.14567 * 0.04168 * 7 2 1 9 9 O 1.21518 * 119.99890 * 6.36074 * 8 7 2 10 10 N 1.34781 * 120.00420 * 186.36041 * 8 7 2 11 11 C 1.46493 * 120.00273 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47345 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.49309 * 54.99832 * 12 11 10 14 14 C 1.53193 * 109.49471 * 294.93281 * 12 11 10 15 15 N 1.46937 * 108.76950 * 185.44403 * 14 12 11 16 16 C 1.36933 * 120.60105 * 233.53521 * 15 14 12 17 17 H 1.08001 * 120.00575 * 29.73313 * 16 15 14 18 18 C 1.38816 * 119.99362 * 209.73043 * 16 15 14 19 19 N 1.31617 * 120.00469 * 16.09610 * 18 16 15 20 20 Si 1.86807 * 119.99809 * 196.09222 * 18 16 15 21 21 H 1.48500 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47080 * 120.00181 * 20 18 16 23 23 H 1.48498 * 109.47182 * 240.00405 * 20 18 16 24 24 C 1.46922 * 118.76261 * 53.55385 * 15 14 12 25 25 C 1.53189 * 108.78038 * 306.41166 * 24 15 14 26 26 C 1.53037 * 109.49745 * 175.05932 * 12 11 10 27 27 F 1.39891 * 109.46472 * 301.33601 * 26 12 11 28 28 F 1.39901 * 109.45772 * 61.31154 * 26 12 11 29 29 H 1.09001 * 109.47075 * 97.18298 * 1 2 3 30 30 H 1.08997 * 109.46885 * 217.17842 * 1 2 3 31 31 H 1.08996 * 109.46874 * 337.17879 * 1 2 3 32 32 H 1.07993 * 120.01942 * 179.97438 * 5 4 3 33 33 H 1.07995 * 121.08815 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99410 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.47139 * 299.99777 * 11 10 8 36 36 H 1.08997 * 109.47691 * 59.99391 * 11 10 8 37 37 H 1.08999 * 109.58578 * 305.20202 * 14 12 11 38 38 H 1.09001 * 109.58749 * 65.62782 * 14 12 11 39 39 H 0.97001 * 120.00093 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.58715 * 186.61921 * 24 15 14 41 41 H 1.09005 * 109.58799 * 66.20499 * 24 15 14 42 42 H 1.08996 * 109.49752 * 294.68743 * 25 24 15 43 43 H 1.08996 * 109.52739 * 174.60177 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 0.0005 5 6 4.2024 0.1039 0.0015 6 6 3.6092 -1.1477 0.0027 7 6 2.2093 -1.2080 0.0005 8 6 1.4984 -2.5075 0.0002 9 8 0.2893 -2.5386 -0.1172 10 7 2.1925 -3.6555 0.1300 11 6 1.4895 -4.9407 0.1291 12 6 2.5022 -6.0762 0.2904 13 1 3.0979 -5.9075 1.1875 14 6 3.4221 -6.1186 -0.9339 15 7 4.3005 -7.2914 -0.8248 16 6 5.6598 -7.1552 -0.9188 17 1 6.1342 -6.2389 -0.5998 18 6 6.4281 -8.1952 -1.4240 19 7 5.8551 -9.1695 -2.0983 20 14 8.2755 -8.2117 -1.1470 21 1 8.6694 -7.0125 -0.3649 22 1 8.6527 -9.4369 -0.3974 23 1 8.9727 -8.1992 -2.4581 24 6 3.6932 -8.6124 -0.6136 25 6 2.7708 -8.5416 0.6075 26 6 1.7600 -7.4089 0.4132 27 9 0.8960 -7.3618 1.5124 28 9 1.0203 -7.6394 -0.7516 29 1 -0.3633 -0.1285 -1.0196 30 1 -0.3633 -0.8188 0.6210 31 1 -0.3633 0.9472 0.3986 32 1 5.2788 0.1914 0.0015 33 1 4.2061 -2.0478 0.0039 34 1 3.1577 -3.6307 0.2233 35 1 0.7797 -4.9672 0.9561 36 1 0.9544 -5.0616 -0.8128 37 1 2.8211 -6.1956 -1.8399 38 1 4.0254 -5.2115 -0.9692 39 1 6.3919 -9.8964 -2.4510 40 1 4.4758 -9.3505 -0.4380 41 1 3.1140 -8.8932 -1.4933 42 1 3.3645 -8.3500 1.5012 43 1 2.2405 -9.4873 0.7188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046953389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -57.209649 kcal Electronic energy + Delta-G solvation = -30144.418978 eV Core-core repulsion = 25668.514969 eV Total energy + Delta-G solvation = -4475.904009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.63750 -46.58710 -41.59136 -39.69459 -37.53008 -35.40603 -33.99423 -33.73475 -32.70063 -31.00601 -30.32532 -28.54835 -26.52594 -25.41982 -25.02310 -23.31207 -22.62219 -21.69142 -21.09417 -19.71386 -18.50830 -17.95917 -17.12643 -16.90541 -16.44626 -16.05351 -15.98266 -15.64922 -15.52610 -15.30769 -15.00879 -14.79583 -14.21709 -13.96839 -13.68015 -13.57839 -13.38036 -13.24785 -13.11733 -12.91645 -12.88997 -12.46206 -12.31049 -11.81627 -11.74904 -11.67543 -11.34821 -11.29428 -10.93755 -10.75404 -10.65037 -10.59944 -10.59027 -10.19746 -10.06680 -10.01021 -9.88376 -9.68926 -9.27559 -8.71759 -6.98349 -6.03658 -3.50961 -0.00939 0.53340 2.49116 2.69399 3.22217 3.28621 3.30442 3.32305 3.69089 3.98040 4.01466 4.09053 4.25551 4.31141 4.39012 4.51977 4.55224 4.76907 4.92636 5.07740 5.10187 5.16543 5.24598 5.28772 5.39993 5.48467 5.48917 5.62403 5.75969 5.77949 5.83354 6.00558 6.04962 6.15522 6.17301 6.19123 6.30916 6.55729 6.99612 7.13716 7.34563 7.55505 7.82435 8.17314 8.33792 8.92510 9.54574 10.10501 11.05392 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.003465 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.942911 B = 8078.075335 C =10199.323796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.124 3.876 3 N -0.247 5.247 4 N -0.224 5.224 5 C 0.029 3.971 6 C -0.078 4.078 7 C -0.133 4.133 8 C 0.561 3.439 9 O -0.518 6.518 10 N -0.711 5.711 11 C 0.125 3.875 12 C -0.157 4.157 13 H 0.103 0.897 14 C 0.152 3.848 15 N -0.589 5.589 16 C -0.266 4.266 17 H 0.069 0.931 18 C 0.010 3.990 19 N -0.897 5.897 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.171 3.829 25 C -0.179 4.179 26 C 0.301 3.699 27 F -0.213 7.213 28 F -0.198 7.198 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.158 0.842 34 H 0.403 0.597 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.257 0.743 40 H 0.099 0.901 41 H 0.033 0.967 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 10.647 6.042 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.020 4.020 3 N -0.091 5.091 4 N -0.065 5.065 5 C -0.134 4.134 6 C -0.108 4.108 7 C -0.147 4.147 8 C 0.346 3.654 9 O -0.395 6.395 10 N -0.363 5.363 11 C 0.001 3.999 12 C -0.178 4.178 13 H 0.121 0.879 14 C 0.025 3.975 15 N -0.311 5.311 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.190 4.190 19 N -0.539 5.539 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.215 1.215 24 C 0.045 3.955 25 C -0.219 4.219 26 C 0.264 3.736 27 F -0.194 7.194 28 F -0.179 7.179 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.198 0.802 33 H 0.175 0.825 34 H 0.239 0.761 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.562 12.100 5.855 14.959 hybrid contribution 1.550 -1.819 0.124 2.393 sum -5.012 10.281 5.980 12.907 Atomic orbital electron populations 1.20972 0.86207 1.04352 1.04784 1.23167 0.99739 0.88521 0.90584 1.73102 1.01516 1.24017 1.10416 1.72872 0.99668 1.27900 1.06093 1.24332 1.02938 0.89126 0.97050 1.22770 0.94068 1.00757 0.93219 1.21095 0.94547 0.95657 1.03448 1.17831 0.86969 0.83087 0.77477 1.90771 1.13153 1.86824 1.48722 1.45841 1.11292 1.05707 1.73466 1.21428 0.94451 0.80479 1.03553 1.23000 0.97905 0.91663 1.05266 0.87904 1.20921 0.91866 0.92552 0.92155 1.44069 1.02404 1.01226 1.83411 1.19149 0.81128 1.02375 1.36880 0.91365 1.25140 0.98366 0.98705 0.96779 1.70016 1.35075 1.12837 1.36003 0.86206 0.85000 0.77738 0.77654 1.20123 1.21353 1.21504 1.20821 0.94603 0.89106 0.90963 1.23275 0.97738 0.95973 1.04905 1.20996 0.83182 0.97935 0.71443 1.92960 1.73534 1.97609 1.55275 1.92974 1.79298 1.95865 1.49794 0.89252 0.87819 0.90557 0.80223 0.82460 0.76055 0.90501 0.90118 0.94845 0.91784 0.93266 0.88335 0.94843 0.89541 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.93 36.01 0.32 -0.76 16 2 C 0.12 1.46 6.91 -82.00 -0.57 0.89 16 3 N -0.25 -3.17 11.42 33.81 0.39 -2.79 16 4 N -0.22 -2.68 11.48 30.52 0.35 -2.33 16 5 C 0.03 0.26 11.30 -17.42 -0.20 0.06 16 6 C -0.08 -0.66 9.68 -38.78 -0.38 -1.04 16 7 C -0.13 -1.44 5.92 -104.58 -0.62 -2.06 16 8 C 0.56 6.82 7.73 -12.20 -0.09 6.72 16 9 O -0.52 -7.55 13.56 5.35 0.07 -7.48 16 10 N -0.71 -7.93 5.29 -61.16 -0.32 -8.26 16 11 C 0.12 1.64 4.83 -4.04 -0.02 1.62 16 12 C -0.16 -2.29 2.03 -90.50 -0.18 -2.48 16 13 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.15 2.67 5.40 -3.70 -0.02 2.65 16 15 N -0.59 -12.82 2.99 -172.31 -0.51 -13.34 16 16 C -0.27 -6.40 9.57 -15.06 -0.14 -6.55 16 17 H 0.07 1.57 7.88 -52.49 -0.41 1.16 16 18 C 0.01 0.25 4.92 -17.43 -0.09 0.17 16 19 N -0.90 -23.90 11.26 55.49 0.62 -23.27 16 20 Si 0.90 19.69 29.58 -169.99 -5.03 14.66 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.17 3.64 5.08 -3.71 -0.02 3.62 16 25 C -0.18 -3.05 5.62 -26.61 -0.15 -3.20 16 26 C 0.30 4.92 1.63 -26.69 -0.04 4.87 16 27 F -0.21 -3.40 16.41 2.25 0.04 -3.36 16 28 F -0.20 -3.55 15.73 2.25 0.04 -3.52 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.15 6.01 -51.93 -0.31 0.83 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.16 0.89 6.66 -52.49 -0.35 0.54 16 34 H 0.40 3.67 5.93 -40.82 -0.24 3.43 16 35 H 0.08 1.04 7.63 -51.93 -0.40 0.64 16 36 H 0.08 1.17 7.97 -51.93 -0.41 0.75 16 37 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 38 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 40 H 0.10 2.34 6.16 -51.93 -0.32 2.02 16 41 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -29.72 356.88 -6.49 -36.21 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.31 Total: 3.57 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.20 Total: 4.52 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.52 Total: -49.98 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.07 Total: -7.48 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.07 Total: -6.88 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.72 -6.49 -36.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046953389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.998 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds