Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31925 * 120.17510 * 2 1 4 4 N 1.28279 * 122.33059 * 179.97438 * 3 2 1 5 5 C 1.31911 * 122.51588 * 359.97438 * 4 3 2 6 6 C 1.38506 * 119.96933 * 359.97438 * 5 4 3 7 7 C 1.39728 * 120.17351 * 179.97438 * 2 1 3 8 8 C 1.48128 * 121.14567 * 0.04168 * 7 2 1 9 9 O 1.21518 * 119.99890 * 6.36074 * 8 7 2 10 10 N 1.34781 * 120.00420 * 186.36041 * 8 7 2 11 11 C 1.46493 * 120.00273 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47345 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.49309 * 54.99832 * 12 11 10 14 14 C 1.53193 * 109.49471 * 294.93281 * 12 11 10 15 15 N 1.46937 * 108.76950 * 185.44403 * 14 12 11 16 16 C 1.36933 * 120.60105 * 233.53521 * 15 14 12 17 17 H 1.08001 * 120.00575 * 29.73313 * 16 15 14 18 18 C 1.38816 * 119.99362 * 209.73043 * 16 15 14 19 19 N 1.31617 * 120.00469 * 16.09610 * 18 16 15 20 20 Si 1.86807 * 119.99809 * 196.09222 * 18 16 15 21 21 H 1.48500 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47080 * 120.00181 * 20 18 16 23 23 H 1.48498 * 109.47182 * 240.00405 * 20 18 16 24 24 C 1.46922 * 118.76261 * 53.55385 * 15 14 12 25 25 C 1.53189 * 108.78038 * 306.41166 * 24 15 14 26 26 C 1.53037 * 109.49745 * 175.05932 * 12 11 10 27 27 F 1.39891 * 109.46472 * 301.33601 * 26 12 11 28 28 F 1.39901 * 109.45772 * 61.31154 * 26 12 11 29 29 H 1.09001 * 109.47075 * 97.18298 * 1 2 3 30 30 H 1.08997 * 109.46885 * 217.17842 * 1 2 3 31 31 H 1.08996 * 109.46874 * 337.17879 * 1 2 3 32 32 H 1.07993 * 120.01942 * 179.97438 * 5 4 3 33 33 H 1.07995 * 121.08815 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99410 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.47139 * 299.99777 * 11 10 8 36 36 H 1.08997 * 109.47691 * 59.99391 * 11 10 8 37 37 H 1.08999 * 109.58578 * 305.20202 * 14 12 11 38 38 H 1.09001 * 109.58749 * 65.62782 * 14 12 11 39 39 H 0.97001 * 120.00093 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.58715 * 186.61921 * 24 15 14 41 41 H 1.09005 * 109.58799 * 66.20499 * 24 15 14 42 42 H 1.08996 * 109.49752 * 294.68743 * 25 24 15 43 43 H 1.08996 * 109.52739 * 174.60177 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 0.0005 5 6 4.2024 0.1039 0.0015 6 6 3.6092 -1.1477 0.0027 7 6 2.2093 -1.2080 0.0005 8 6 1.4984 -2.5075 0.0002 9 8 0.2893 -2.5386 -0.1172 10 7 2.1925 -3.6555 0.1300 11 6 1.4895 -4.9407 0.1291 12 6 2.5022 -6.0762 0.2904 13 1 3.0979 -5.9075 1.1875 14 6 3.4221 -6.1186 -0.9339 15 7 4.3005 -7.2914 -0.8248 16 6 5.6598 -7.1552 -0.9188 17 1 6.1342 -6.2389 -0.5998 18 6 6.4281 -8.1952 -1.4240 19 7 5.8551 -9.1695 -2.0983 20 14 8.2755 -8.2117 -1.1470 21 1 8.6694 -7.0125 -0.3649 22 1 8.6527 -9.4369 -0.3974 23 1 8.9727 -8.1992 -2.4581 24 6 3.6932 -8.6124 -0.6136 25 6 2.7708 -8.5416 0.6075 26 6 1.7600 -7.4089 0.4132 27 9 0.8960 -7.3618 1.5124 28 9 1.0203 -7.6394 -0.7516 29 1 -0.3633 -0.1285 -1.0196 30 1 -0.3633 -0.8188 0.6210 31 1 -0.3633 0.9472 0.3986 32 1 5.2788 0.1914 0.0015 33 1 4.2061 -2.0478 0.0039 34 1 3.1577 -3.6307 0.2233 35 1 0.7797 -4.9672 0.9561 36 1 0.9544 -5.0616 -0.8128 37 1 2.8211 -6.1956 -1.8399 38 1 4.0254 -5.2115 -0.9692 39 1 6.3919 -9.8964 -2.4510 40 1 4.4758 -9.3505 -0.4380 41 1 3.1140 -8.8932 -1.4933 42 1 3.3645 -8.3500 1.5012 43 1 2.2405 -9.4873 0.7188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046953389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = -75.959244 kcal Electronic energy + Delta-G solvation = -30145.232022 eV Core-core repulsion = 25668.514969 eV Total energy + Delta-G solvation = -4476.717052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.98066 -47.93621 -42.40796 -40.66052 -38.95807 -36.60737 -34.84795 -34.74035 -34.08473 -32.31386 -31.94837 -29.38556 -27.61879 -27.02666 -26.13159 -24.16438 -24.02143 -23.07780 -22.08998 -21.14020 -19.48143 -18.89186 -18.61787 -18.28184 -17.61901 -17.05370 -17.03868 -16.77325 -16.71742 -16.55865 -16.13986 -15.92398 -15.50269 -15.35829 -14.91599 -14.75518 -14.60378 -14.39839 -14.25757 -14.24785 -13.81861 -13.79791 -13.28090 -13.24279 -13.17122 -13.05415 -13.00555 -12.62189 -12.24663 -12.15152 -12.09738 -11.91034 -11.61548 -11.53970 -11.38926 -11.27187 -10.87788 -10.61476 -10.57428 -10.25967 -8.76818 -7.89633 -5.38184 -0.80229 -0.20476 1.51077 1.55121 1.59193 1.63334 1.73224 2.48389 2.50586 2.78875 2.92917 3.15220 3.21691 3.25399 3.27448 3.31121 3.52700 3.55411 3.64269 3.72357 3.92033 4.07844 4.23673 4.26418 4.42034 4.48902 4.50196 4.56720 4.66362 4.68645 4.77946 4.84835 4.89804 4.90658 5.02295 5.09704 5.17219 5.29966 5.31860 5.60309 5.68760 6.25506 6.36310 6.92148 7.10005 7.55052 7.77586 8.30920 9.18614 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.003465 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.942911 B = 8078.075335 C =10199.323796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.112 3.888 3 N -0.275 5.275 4 N -0.253 5.253 5 C 0.036 3.964 6 C -0.061 4.061 7 C -0.145 4.145 8 C 0.565 3.435 9 O -0.546 6.546 10 N -0.700 5.700 11 C 0.136 3.864 12 C -0.140 4.140 13 H 0.123 0.877 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.262 4.262 17 H 0.085 0.915 18 C -0.045 4.045 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.257 1.257 22 H -0.296 1.296 23 H -0.299 1.299 24 C 0.178 3.822 25 C -0.169 4.169 26 C 0.299 3.701 27 F -0.206 7.206 28 F -0.210 7.210 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.219 0.781 33 H 0.192 0.808 34 H 0.416 0.584 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.070 0.930 41 H 0.003 0.997 42 H 0.101 0.899 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 11.867 7.494 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.033 4.033 3 N -0.117 5.117 4 N -0.093 5.093 5 C -0.128 4.128 6 C -0.090 4.090 7 C -0.160 4.160 8 C 0.351 3.649 9 O -0.425 6.425 10 N -0.353 5.353 11 C 0.011 3.989 12 C -0.161 4.161 13 H 0.141 0.859 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.392 4.392 17 H 0.102 0.898 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.223 1.223 23 H -0.227 1.227 24 C 0.052 3.948 25 C -0.209 4.209 26 C 0.263 3.737 27 F -0.187 7.187 28 F -0.191 7.191 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.235 0.765 33 H 0.209 0.791 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.021 0.979 42 H 0.119 0.881 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.301 13.371 7.332 16.144 hybrid contribution 1.152 -2.196 -0.346 2.504 sum -4.149 11.174 6.985 13.816 Atomic orbital electron populations 1.20913 0.85951 1.04444 1.04538 1.23314 1.00193 0.88847 0.90916 1.73054 1.02244 1.24654 1.11755 1.72781 0.99624 1.29731 1.07199 1.24948 1.04431 0.88328 0.95100 1.23165 0.93099 1.02035 0.90741 1.21006 0.95675 0.94475 1.04800 1.17983 0.86647 0.83564 0.76744 1.90766 1.14516 1.87229 1.49986 1.45656 1.11825 1.04703 1.73143 1.21183 0.93993 0.80772 1.02936 1.22801 0.97501 0.91240 1.04534 0.85864 1.21018 0.91772 0.91864 0.92706 1.44302 1.02493 1.02303 1.83613 1.19606 0.82295 1.02370 1.34880 0.89763 1.25853 1.01945 0.98953 0.97366 1.70171 1.36163 1.13694 1.38057 0.85256 0.80689 0.77869 0.76866 1.18095 1.22260 1.22690 1.20520 0.93982 0.88688 0.91594 1.23096 0.97381 0.97264 1.03129 1.21052 0.83026 0.98499 0.71173 1.92972 1.73315 1.97608 1.54851 1.92960 1.79603 1.95990 1.50581 0.89415 0.88668 0.89681 0.76457 0.79065 0.74557 0.90337 0.91520 0.96649 0.89435 0.94092 0.91175 0.97893 0.88085 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 8.93 71.24 0.64 -1.42 16 2 C 0.11 2.54 6.91 42.90 0.30 2.84 16 3 N -0.27 -6.84 11.42 -46.95 -0.54 -7.38 16 4 N -0.25 -5.63 11.48 -57.34 -0.66 -6.29 16 5 C 0.04 0.52 11.30 84.74 0.96 1.48 16 6 C -0.06 -0.81 9.68 22.79 0.22 -0.59 16 7 C -0.15 -2.85 5.92 -19.83 -0.12 -2.97 16 8 C 0.56 12.63 7.73 86.87 0.67 13.30 16 9 O -0.55 -15.46 13.56 -3.77 -0.05 -15.51 16 10 N -0.70 -13.53 5.29 -465.70 -2.46 -16.00 16 11 C 0.14 3.26 4.83 86.38 0.42 3.67 16 12 C -0.14 -3.71 2.03 -10.72 -0.02 -3.73 16 13 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 14 C 0.15 5.01 5.40 86.36 0.47 5.48 16 15 N -0.60 -25.59 2.99 -699.07 -2.09 -27.67 16 16 C -0.26 -12.14 9.57 84.03 0.80 -11.34 16 17 H 0.08 3.58 7.88 -2.91 -0.02 3.56 16 18 C -0.05 -2.24 4.92 84.86 0.42 -1.83 16 19 N -0.94 -50.89 11.26 21.65 0.24 -50.65 16 20 Si 0.96 39.98 29.58 68.60 2.03 42.01 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.30 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.30 -12.83 7.11 99.48 0.71 -12.13 16 24 C 0.18 7.62 5.08 86.36 0.44 8.06 16 25 C -0.17 -5.53 5.62 30.67 0.17 -5.36 16 26 C 0.30 9.21 1.63 30.62 0.05 9.26 16 27 F -0.21 -6.08 16.41 44.97 0.74 -5.34 16 28 F -0.21 -7.40 15.73 44.97 0.71 -6.69 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.11 6.01 -2.39 -0.01 2.10 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.19 1.13 6.66 -2.91 -0.02 1.11 16 34 H 0.42 5.79 5.93 -92.71 -0.55 5.24 16 35 H 0.08 1.93 7.63 -2.38 -0.02 1.91 16 36 H 0.07 1.83 7.97 -2.39 -0.02 1.81 16 37 H 0.02 0.57 7.92 -2.39 -0.02 0.56 16 38 H 0.09 2.44 7.14 -2.39 -0.02 2.42 16 39 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 40 H 0.07 3.40 6.16 -2.38 -0.01 3.39 16 41 H 0.00 0.14 7.92 -2.38 -0.02 0.12 16 42 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -65.67 356.88 3.85 -61.82 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.52 Total: 14.84 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.41 Total: 16.86 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -5.50 Total: -107.99 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.05 Total: -15.51 kcal Atomic # 9 Polarization: -13.48 SS G_CDS: 1.45 Total: -12.03 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -65.67 3.85 -61.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046953389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.135 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds