Wall clock time and date at job start Sat Apr 11 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31928 * 120.17003 * 2 1 4 4 N 1.28274 * 122.32879 * 179.97438 * 3 2 1 5 5 C 1.31920 * 122.51295 * 359.97438 * 4 3 2 6 6 C 1.38498 * 119.96985 * 359.97438 * 5 4 3 7 7 C 1.39724 * 120.17875 * 179.72150 * 2 1 3 8 8 C 1.48143 * 121.14067 * 0.02562 * 7 2 1 9 9 O 1.21515 * 119.99885 * 4.61170 * 8 7 2 10 10 N 1.34772 * 119.99677 * 184.60552 * 8 7 2 11 11 C 1.46498 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.47301 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49581 * 304.93513 * 12 11 10 14 14 C 1.53188 * 109.49690 * 65.00177 * 12 11 10 15 15 N 1.46918 * 108.77660 * 174.58792 * 14 12 11 16 16 C 1.36941 * 120.63221 * 126.36796 * 15 14 12 17 17 H 1.08005 * 119.99757 * 326.75231 * 16 15 14 18 18 C 1.38817 * 120.00232 * 146.74858 * 16 15 14 19 19 N 1.31624 * 119.99553 * 348.10491 * 18 16 15 20 20 Si 1.86791 * 120.00029 * 168.10057 * 18 16 15 21 21 H 1.48499 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47163 * 120.00277 * 20 18 16 23 23 H 1.48507 * 109.47268 * 240.00103 * 20 18 16 24 24 C 1.46925 * 118.74000 * 306.38954 * 15 14 12 25 25 C 1.53192 * 108.77425 * 53.61090 * 24 15 14 26 26 C 1.53041 * 109.30928 * 305.36336 * 25 24 15 27 27 F 1.39900 * 109.46373 * 301.34181 * 26 25 24 28 28 F 1.39904 * 109.46063 * 181.38410 * 26 25 24 29 29 H 1.09002 * 109.47352 * 96.81490 * 1 2 3 30 30 H 1.09004 * 109.46584 * 216.81156 * 1 2 3 31 31 H 1.08995 * 109.47713 * 336.80710 * 1 2 3 32 32 H 1.08002 * 120.01454 * 180.02562 * 5 4 3 33 33 H 1.08005 * 121.08692 * 180.02562 * 6 5 4 34 34 H 0.96998 * 120.00767 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47633 * 300.00644 * 11 10 8 36 36 H 1.09003 * 109.47251 * 60.00705 * 11 10 8 37 37 H 1.09003 * 109.58768 * 294.37510 * 14 12 11 38 38 H 1.09005 * 109.58893 * 54.79510 * 14 12 11 39 39 H 0.97001 * 119.99467 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.59150 * 173.39377 * 24 15 14 41 41 H 1.09001 * 109.58935 * 293.82176 * 24 15 14 42 42 H 1.09000 * 109.49948 * 65.31127 * 25 24 15 43 43 H 1.09000 * 109.49870 * 185.41683 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1406 0.0000 4 7 3.4518 1.1889 0.0005 5 6 4.2023 0.1039 0.0015 6 6 3.6091 -1.1476 0.0027 7 6 2.2094 -1.2078 0.0059 8 6 1.4984 -2.5075 0.0116 9 8 0.2866 -2.5375 -0.0733 10 7 2.1957 -3.6565 0.1109 11 6 1.4925 -4.9418 0.1172 12 6 2.5091 -6.0787 0.2392 13 1 3.2483 -5.9929 -0.5573 14 6 3.2101 -5.9941 1.5986 15 7 4.0858 -7.1637 1.7528 16 6 5.4116 -7.0073 2.0579 17 1 5.9539 -6.1504 1.6861 18 6 6.0586 -7.9500 2.8451 19 7 5.3599 -8.8607 3.4893 20 14 7.9208 -7.9263 2.9899 21 1 8.4666 -6.8123 2.1738 22 1 8.3043 -7.7334 4.4115 23 1 8.4720 -9.2150 2.4991 24 6 3.5122 -8.5043 1.5729 25 6 2.8079 -8.5609 0.2137 26 6 1.7877 -7.4236 0.1247 27 9 0.8613 -7.5457 1.1659 28 9 1.1202 -7.4912 -1.1030 29 1 -0.3634 -0.1219 -1.0204 30 1 -0.3633 -0.8228 0.6158 31 1 -0.3634 0.9445 0.4047 32 1 5.2787 0.1916 0.0023 33 1 4.2061 -2.0477 0.0039 34 1 3.1629 -3.6326 0.1790 35 1 0.8060 -4.9763 0.9632 36 1 0.9316 -5.0536 -0.8107 37 1 3.8061 -5.0826 1.6464 38 1 2.4651 -5.9880 2.3943 39 1 5.8120 -9.5196 4.0390 40 1 4.3074 -9.2492 1.6035 41 1 2.7918 -8.7031 2.3664 42 1 3.5443 -8.4521 -0.5825 43 1 2.2962 -9.5176 0.1086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046953390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:21 Heat of formation + Delta-G solvation = -57.846745 kcal Electronic energy + Delta-G solvation = -30144.401967 eV Core-core repulsion = 25668.470332 eV Total energy + Delta-G solvation = -4475.931635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.63153 -46.58065 -41.59047 -39.69374 -37.51894 -35.40030 -33.98852 -33.73108 -32.69760 -31.00543 -30.31059 -28.54129 -26.52281 -25.41176 -25.01795 -23.31111 -22.61624 -21.68228 -21.09154 -19.71252 -18.50776 -17.95157 -17.12292 -16.90324 -16.45447 -16.06205 -15.94484 -15.64985 -15.53349 -15.29432 -14.99903 -14.81233 -14.21165 -13.97957 -13.67636 -13.57501 -13.36447 -13.21939 -13.12885 -12.91201 -12.89187 -12.45611 -12.31157 -11.80066 -11.72344 -11.67576 -11.32960 -11.28049 -10.95373 -10.74558 -10.64957 -10.60281 -10.57898 -10.23501 -10.06141 -10.00563 -9.86960 -9.67359 -9.27287 -8.72108 -6.92396 -6.03477 -3.55399 -0.00818 0.53552 2.49254 2.69688 3.22005 3.29163 3.29891 3.31850 3.69482 3.98027 4.01603 4.09361 4.25462 4.31182 4.38920 4.52255 4.55780 4.77730 4.92957 5.08569 5.10042 5.17193 5.25099 5.29366 5.40911 5.48690 5.49394 5.62668 5.76586 5.78620 5.83823 6.00972 6.05838 6.16681 6.18920 6.20275 6.32063 6.57162 7.00294 7.14003 7.35475 7.56109 7.82791 8.20330 8.34076 8.93573 9.53987 10.11931 11.05532 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.003483 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.479306 B = 8037.513343 C =10143.282941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.125 3.875 3 N -0.247 5.247 4 N -0.224 5.224 5 C 0.029 3.971 6 C -0.078 4.078 7 C -0.133 4.133 8 C 0.561 3.439 9 O -0.518 6.518 10 N -0.711 5.711 11 C 0.124 3.876 12 C -0.157 4.157 13 H 0.102 0.898 14 C 0.152 3.848 15 N -0.589 5.589 16 C -0.268 4.268 17 H 0.067 0.933 18 C 0.013 3.987 19 N -0.897 5.897 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.287 1.287 24 C 0.173 3.827 25 C -0.179 4.179 26 C 0.301 3.699 27 F -0.198 7.198 28 F -0.213 7.213 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.157 0.843 34 H 0.403 0.597 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.257 0.743 40 H 0.096 0.904 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 9.862 -8.086 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.020 4.020 3 N -0.090 5.090 4 N -0.065 5.065 5 C -0.135 4.135 6 C -0.108 4.108 7 C -0.147 4.147 8 C 0.347 3.653 9 O -0.395 6.395 10 N -0.363 5.363 11 C 0.001 3.999 12 C -0.178 4.178 13 H 0.121 0.879 14 C 0.025 3.975 15 N -0.311 5.311 16 C -0.397 4.397 17 H 0.085 0.915 18 C -0.188 4.188 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.214 1.214 24 C 0.047 3.953 25 C -0.219 4.219 26 C 0.265 3.735 27 F -0.179 7.179 28 F -0.194 7.194 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.198 0.802 33 H 0.175 0.825 34 H 0.240 0.760 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.052 0.948 42 H 0.104 0.896 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.306 11.328 -8.011 14.854 hybrid contribution 1.559 -1.791 0.099 2.377 sum -3.747 9.536 -7.913 12.946 Atomic orbital electron populations 1.21006 0.86203 1.04591 1.04705 1.23170 0.99751 0.88510 0.90538 1.73103 1.01511 1.24029 1.10402 1.72874 0.99677 1.27894 1.06082 1.24329 1.02928 0.89134 0.97078 1.22754 0.94070 1.00726 0.93273 1.21091 0.94541 0.95670 1.03433 1.17831 0.87003 0.83091 0.77419 1.90762 1.12981 1.86810 1.48929 1.45843 1.11015 1.05663 1.73763 1.21432 0.94575 0.80497 1.03413 1.23003 0.98168 0.91560 1.05106 0.87933 1.20931 0.93489 0.92529 0.90551 1.44020 1.06189 0.99448 1.81413 1.19131 0.84484 1.09860 1.26208 0.91533 1.25249 0.98546 0.99167 0.95800 1.69985 1.34287 1.18859 1.30802 0.86186 0.84971 0.77700 0.77624 1.20101 1.21436 1.21352 1.20804 0.96879 0.88919 0.88747 1.23284 0.97590 0.95794 1.05259 1.20998 0.83377 0.98304 0.70866 1.92974 1.68976 1.97175 1.58802 1.92963 1.83298 1.97568 1.45576 0.89374 0.87547 0.90532 0.80240 0.82508 0.76050 0.90126 0.90495 0.91778 0.94850 0.93243 0.88550 0.94804 0.89562 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 8.98 36.00 0.32 -0.79 16 2 C 0.12 1.47 6.91 -82.00 -0.57 0.90 16 3 N -0.25 -3.19 11.42 33.81 0.39 -2.80 16 4 N -0.22 -2.69 11.48 30.53 0.35 -2.34 16 5 C 0.03 0.26 11.30 -17.42 -0.20 0.06 16 6 C -0.08 -0.66 9.69 -38.79 -0.38 -1.04 16 7 C -0.13 -1.44 5.92 -104.57 -0.62 -2.06 16 8 C 0.56 6.84 7.75 -12.20 -0.09 6.74 16 9 O -0.52 -7.56 13.50 5.35 0.07 -7.48 16 10 N -0.71 -7.95 5.29 -61.15 -0.32 -8.28 16 11 C 0.12 1.65 4.83 -4.04 -0.02 1.63 16 12 C -0.16 -2.30 2.03 -90.50 -0.18 -2.48 16 13 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.15 2.68 5.40 -3.72 -0.02 2.66 16 15 N -0.59 -12.85 2.97 -172.32 -0.51 -13.36 16 16 C -0.27 -6.45 9.55 -15.06 -0.14 -6.59 16 17 H 0.07 1.54 7.86 -52.48 -0.41 1.13 16 18 C 0.01 0.32 5.00 -17.43 -0.09 0.23 16 19 N -0.90 -23.93 11.27 55.49 0.63 -23.31 16 20 Si 0.91 19.72 29.57 -169.99 -5.03 14.70 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.17 3.67 5.04 -3.71 -0.02 3.65 16 25 C -0.18 -3.06 5.62 -26.61 -0.15 -3.21 16 26 C 0.30 4.93 1.63 -26.69 -0.04 4.88 16 27 F -0.20 -3.56 15.73 2.25 0.04 -3.53 16 28 F -0.21 -3.41 16.41 2.25 0.04 -3.37 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 1.21 5.91 -51.93 -0.31 0.90 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.16 0.86 6.64 -52.48 -0.35 0.52 16 34 H 0.40 3.69 5.91 -40.82 -0.24 3.45 16 35 H 0.08 1.17 7.97 -51.93 -0.41 0.75 16 36 H 0.08 1.04 7.63 -51.93 -0.40 0.65 16 37 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 38 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.10 2.29 6.30 -51.93 -0.33 1.96 16 41 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -29.75 356.89 -6.48 -36.23 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.31 Total: 3.58 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.20 Total: 4.58 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.53 Total: -50.09 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.48 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.07 Total: -6.90 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.75 -6.48 -36.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046953390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.617 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds