Wall clock time and date at job start Sat Apr 11 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31928 * 120.17003 * 2 1 4 4 N 1.28274 * 122.32879 * 179.97438 * 3 2 1 5 5 C 1.31920 * 122.51295 * 359.97438 * 4 3 2 6 6 C 1.38498 * 119.96985 * 359.97438 * 5 4 3 7 7 C 1.39724 * 120.17875 * 179.72150 * 2 1 3 8 8 C 1.48143 * 121.14067 * 0.02562 * 7 2 1 9 9 O 1.21515 * 119.99885 * 4.61170 * 8 7 2 10 10 N 1.34772 * 119.99677 * 184.60552 * 8 7 2 11 11 C 1.46498 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.47301 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49581 * 304.93513 * 12 11 10 14 14 C 1.53188 * 109.49690 * 65.00177 * 12 11 10 15 15 N 1.46918 * 108.77660 * 174.58792 * 14 12 11 16 16 C 1.36941 * 120.63221 * 126.36796 * 15 14 12 17 17 H 1.08005 * 119.99757 * 326.75231 * 16 15 14 18 18 C 1.38817 * 120.00232 * 146.74858 * 16 15 14 19 19 N 1.31624 * 119.99553 * 348.10491 * 18 16 15 20 20 Si 1.86791 * 120.00029 * 168.10057 * 18 16 15 21 21 H 1.48499 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47163 * 120.00277 * 20 18 16 23 23 H 1.48507 * 109.47268 * 240.00103 * 20 18 16 24 24 C 1.46925 * 118.74000 * 306.38954 * 15 14 12 25 25 C 1.53192 * 108.77425 * 53.61090 * 24 15 14 26 26 C 1.53041 * 109.30928 * 305.36336 * 25 24 15 27 27 F 1.39900 * 109.46373 * 301.34181 * 26 25 24 28 28 F 1.39904 * 109.46063 * 181.38410 * 26 25 24 29 29 H 1.09002 * 109.47352 * 96.81490 * 1 2 3 30 30 H 1.09004 * 109.46584 * 216.81156 * 1 2 3 31 31 H 1.08995 * 109.47713 * 336.80710 * 1 2 3 32 32 H 1.08002 * 120.01454 * 180.02562 * 5 4 3 33 33 H 1.08005 * 121.08692 * 180.02562 * 6 5 4 34 34 H 0.96998 * 120.00767 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47633 * 300.00644 * 11 10 8 36 36 H 1.09003 * 109.47251 * 60.00705 * 11 10 8 37 37 H 1.09003 * 109.58768 * 294.37510 * 14 12 11 38 38 H 1.09005 * 109.58893 * 54.79510 * 14 12 11 39 39 H 0.97001 * 119.99467 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.59150 * 173.39377 * 24 15 14 41 41 H 1.09001 * 109.58935 * 293.82176 * 24 15 14 42 42 H 1.09000 * 109.49948 * 65.31127 * 25 24 15 43 43 H 1.09000 * 109.49870 * 185.41683 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1406 0.0000 4 7 3.4518 1.1889 0.0005 5 6 4.2023 0.1039 0.0015 6 6 3.6091 -1.1476 0.0027 7 6 2.2094 -1.2078 0.0059 8 6 1.4984 -2.5075 0.0116 9 8 0.2866 -2.5375 -0.0733 10 7 2.1957 -3.6565 0.1109 11 6 1.4925 -4.9418 0.1172 12 6 2.5091 -6.0787 0.2392 13 1 3.2483 -5.9929 -0.5573 14 6 3.2101 -5.9941 1.5986 15 7 4.0858 -7.1637 1.7528 16 6 5.4116 -7.0073 2.0579 17 1 5.9539 -6.1504 1.6861 18 6 6.0586 -7.9500 2.8451 19 7 5.3599 -8.8607 3.4893 20 14 7.9208 -7.9263 2.9899 21 1 8.4666 -6.8123 2.1738 22 1 8.3043 -7.7334 4.4115 23 1 8.4720 -9.2150 2.4991 24 6 3.5122 -8.5043 1.5729 25 6 2.8079 -8.5609 0.2137 26 6 1.7877 -7.4236 0.1247 27 9 0.8613 -7.5457 1.1659 28 9 1.1202 -7.4912 -1.1030 29 1 -0.3634 -0.1219 -1.0204 30 1 -0.3633 -0.8228 0.6158 31 1 -0.3634 0.9445 0.4047 32 1 5.2787 0.1916 0.0023 33 1 4.2061 -2.0477 0.0039 34 1 3.1629 -3.6326 0.1790 35 1 0.8060 -4.9763 0.9632 36 1 0.9316 -5.0536 -0.8107 37 1 3.8061 -5.0826 1.6464 38 1 2.4651 -5.9880 2.3943 39 1 5.8120 -9.5196 4.0390 40 1 4.3074 -9.2492 1.6035 41 1 2.7918 -8.7031 2.3664 42 1 3.5443 -8.4521 -0.5825 43 1 2.2962 -9.5176 0.1086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046953390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:21 Heat of formation + Delta-G solvation = -76.641552 kcal Electronic energy + Delta-G solvation = -30145.216971 eV Core-core repulsion = 25668.470332 eV Total energy + Delta-G solvation = -4476.746639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97683 -47.93184 -42.40788 -40.66064 -38.94991 -36.60338 -34.84513 -34.73848 -34.08826 -32.31182 -31.94093 -29.38331 -27.61820 -27.02352 -26.12860 -24.16547 -24.01988 -23.07040 -22.09021 -21.14307 -19.47976 -18.88586 -18.62073 -18.27930 -17.62561 -17.04970 -17.03336 -16.75185 -16.69122 -16.60730 -16.13906 -15.92399 -15.49910 -15.35506 -14.92386 -14.74470 -14.60304 -14.37509 -14.29603 -14.23069 -13.81552 -13.79485 -13.31869 -13.20806 -13.16722 -13.03244 -12.99432 -12.63295 -12.24836 -12.14934 -12.09559 -11.94612 -11.61138 -11.53028 -11.38835 -11.26393 -10.87623 -10.60953 -10.57891 -10.26057 -8.71255 -7.89804 -5.43212 -0.80078 -0.20264 1.50863 1.54472 1.59034 1.62829 1.73627 2.48821 2.49971 2.79092 2.93113 3.15499 3.21820 3.26455 3.27691 3.31312 3.52303 3.55849 3.64737 3.72379 3.92597 4.08192 4.23866 4.26608 4.41976 4.48814 4.50651 4.57217 4.66640 4.68564 4.78312 4.85382 4.90232 4.90694 5.02215 5.10031 5.17443 5.30004 5.32959 5.60940 5.68345 6.25653 6.38565 6.92381 7.10858 7.55243 7.76565 8.31814 9.18258 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.003483 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.479306 B = 8037.513343 C =10143.282941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.112 3.888 3 N -0.275 5.275 4 N -0.253 5.253 5 C 0.036 3.964 6 C -0.060 4.060 7 C -0.146 4.146 8 C 0.565 3.435 9 O -0.546 6.546 10 N -0.700 5.700 11 C 0.135 3.865 12 C -0.139 4.139 13 H 0.124 0.876 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.083 0.917 18 C -0.043 4.043 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.299 1.299 23 H -0.295 1.295 24 C 0.180 3.820 25 C -0.169 4.169 26 C 0.299 3.701 27 F -0.210 7.210 28 F -0.206 7.206 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.219 0.781 33 H 0.193 0.807 34 H 0.416 0.584 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.014 0.986 39 H 0.250 0.750 40 H 0.068 0.932 41 H 0.003 0.997 42 H 0.101 0.899 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 10.902 -9.659 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.033 4.033 3 N -0.117 5.117 4 N -0.094 5.094 5 C -0.128 4.128 6 C -0.090 4.090 7 C -0.160 4.160 8 C 0.351 3.649 9 O -0.425 6.425 10 N -0.353 5.353 11 C 0.011 3.989 12 C -0.161 4.161 13 H 0.142 0.858 14 C 0.027 3.973 15 N -0.327 5.327 16 C -0.393 4.393 17 H 0.100 0.900 18 C -0.239 4.239 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.226 1.226 23 H -0.222 1.222 24 C 0.054 3.946 25 C -0.209 4.209 26 C 0.263 3.737 27 F -0.192 7.192 28 F -0.187 7.187 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.236 0.764 33 H 0.210 0.790 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.032 0.968 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.021 0.979 42 H 0.120 0.880 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.732 12.416 -9.611 16.138 hybrid contribution 1.065 -2.115 0.592 2.441 sum -2.666 10.301 -9.019 13.948 Atomic orbital electron populations 1.20942 0.85993 1.04464 1.04633 1.23313 1.00187 0.88869 0.90905 1.73055 1.02257 1.24659 1.11772 1.72781 0.99622 1.29758 1.07199 1.24956 1.04441 0.88332 0.95102 1.23166 0.93073 1.02052 0.90710 1.21005 0.95707 0.94462 1.04819 1.17985 0.86684 0.83569 0.76690 1.90758 1.14338 1.87212 1.50186 1.45657 1.11543 1.04666 1.73450 1.21187 0.93972 0.80807 1.02926 1.22803 0.98382 0.91123 1.03751 0.85797 1.21012 0.92886 0.91861 0.91564 1.44251 1.06309 1.00576 1.81566 1.19582 0.85603 1.09499 1.24655 0.89950 1.25967 1.02152 0.99497 0.96288 1.70147 1.35584 1.19965 1.32353 0.85234 0.80718 0.77702 0.76908 1.18048 1.22629 1.22207 1.20497 0.95423 0.88467 0.90224 1.23103 0.97917 0.97049 1.02816 1.21056 0.83056 0.98893 0.70741 1.92959 1.69444 1.97264 1.59487 1.92976 1.83148 1.97588 1.45037 0.89160 0.88687 0.89802 0.76417 0.78972 0.74556 0.91579 0.90297 0.89559 0.96751 0.94070 0.91389 0.97903 0.88045 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 8.98 71.23 0.64 -1.49 16 2 C 0.11 2.56 6.91 42.90 0.30 2.86 16 3 N -0.28 -6.90 11.42 -46.95 -0.54 -7.43 16 4 N -0.25 -5.66 11.48 -57.33 -0.66 -6.32 16 5 C 0.04 0.51 11.30 84.74 0.96 1.47 16 6 C -0.06 -0.79 9.69 22.79 0.22 -0.57 16 7 C -0.15 -2.87 5.92 -19.83 -0.12 -2.98 16 8 C 0.56 12.67 7.75 86.88 0.67 13.34 16 9 O -0.55 -15.50 13.50 -3.76 -0.05 -15.55 16 10 N -0.70 -13.59 5.29 -465.68 -2.46 -16.05 16 11 C 0.14 3.27 4.83 86.38 0.42 3.68 16 12 C -0.14 -3.71 2.03 -10.71 -0.02 -3.73 16 13 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 14 C 0.15 5.08 5.40 86.36 0.47 5.54 16 15 N -0.60 -25.70 2.97 -699.10 -2.08 -27.77 16 16 C -0.26 -12.27 9.55 84.03 0.80 -11.47 16 17 H 0.08 3.52 7.86 -2.91 -0.02 3.50 16 18 C -0.04 -2.13 5.00 84.86 0.42 -1.71 16 19 N -0.94 -50.98 11.27 21.65 0.24 -50.74 16 20 Si 0.97 40.04 29.57 68.60 2.03 42.07 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.30 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.18 7.71 5.04 86.36 0.44 8.14 16 25 C -0.17 -5.53 5.62 30.67 0.17 -5.36 16 26 C 0.30 9.23 1.63 30.62 0.05 9.28 16 27 F -0.21 -7.43 15.73 44.97 0.71 -6.73 16 28 F -0.21 -6.08 16.41 44.97 0.74 -5.34 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.19 5.91 -2.38 -0.01 2.18 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.19 1.06 6.64 -2.91 -0.02 1.04 16 34 H 0.42 5.82 5.91 -92.71 -0.55 5.27 16 35 H 0.07 1.83 7.97 -2.38 -0.02 1.81 16 36 H 0.08 1.94 7.63 -2.39 -0.02 1.92 16 37 H 0.09 2.46 7.13 -2.39 -0.02 2.44 16 38 H 0.01 0.54 7.92 -2.38 -0.02 0.53 16 39 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 40 H 0.07 3.30 6.30 -2.39 -0.02 3.28 16 41 H 0.00 0.14 7.92 -2.39 -0.02 0.12 16 42 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -65.91 356.89 3.87 -62.04 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.52 Total: 14.80 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.42 Total: 17.01 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -5.49 Total: -108.31 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.05 Total: -15.55 kcal Atomic # 9 Polarization: -13.51 SS G_CDS: 1.45 Total: -12.07 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -65.91 3.87 -62.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046953390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.604 kcal (2) G-P(sol) polarization free energy of solvation -65.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds