Wall clock time and date at job start Sat Apr 11 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99978 * 2 1 4 4 H 1.48492 * 109.47135 * 269.99801 * 3 2 1 5 5 H 1.48500 * 109.46988 * 29.99627 * 3 2 1 6 6 H 1.48494 * 109.47199 * 149.99377 * 3 2 1 7 7 C 1.38810 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00473 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99718 * 0.02562 * 7 2 1 10 10 C 1.46780 * 125.33813 * 179.97438 * 9 7 2 11 11 C 1.53969 * 106.62820 * 161.48386 * 10 9 7 12 12 H 1.08992 * 113.01248 * 265.71552 * 11 10 9 13 13 C 1.54112 * 109.45841 * 138.17510 * 11 10 9 14 14 N 1.46744 * 106.62591 * 278.65466 * 13 11 10 15 15 C 1.34784 * 125.32744 * 161.56550 * 14 13 11 16 16 O 1.21274 * 119.99897 * 179.42209 * 15 14 13 17 17 C 1.50695 * 119.99635 * 359.69250 * 15 14 13 18 18 N 1.46506 * 109.46874 * 180.02562 * 17 15 14 19 19 C 1.34945 * 126.03867 * 124.99929 * 18 17 15 20 20 C 1.35315 * 107.74514 * 179.97438 * 19 18 17 21 21 C 1.39870 * 107.92106 * 0.02562 * 20 19 18 22 22 C 1.50706 * 125.89813 * 179.97438 * 21 20 19 23 23 F 1.39903 * 109.46655 * 299.99622 * 22 21 20 24 24 F 1.39899 * 109.47263 * 59.99556 * 22 21 20 25 25 N 1.30835 * 108.20336 * 359.73286 * 21 20 19 26 26 C 1.46637 * 109.34636 * 341.30153 * 14 13 11 27 27 C 1.53698 * 108.00725 * 1.07924 * 26 14 13 28 28 H 1.08999 * 112.55812 * 254.09105 * 27 26 14 29 29 C 1.46670 * 125.33986 * 359.97438 * 9 7 2 30 30 H 0.96995 * 120.00242 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.02875 * 42.18920 * 10 9 7 32 32 H 1.09001 * 110.02600 * 280.77405 * 10 9 7 33 33 H 1.09001 * 110.14890 * 159.31994 * 13 11 10 34 34 H 1.08994 * 109.95539 * 37.88689 * 13 11 10 35 35 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 36 36 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 37 37 H 1.07999 * 126.12461 * 359.95940 * 19 18 17 38 38 H 1.07997 * 126.03924 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.46772 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.76519 * 120.71791 * 26 14 13 41 41 H 1.09007 * 109.76285 * 241.44032 * 26 14 13 42 42 H 1.08996 * 109.77190 * 60.92532 * 29 9 7 43 43 H 1.09005 * 109.77041 * 300.16185 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9381 -3.7219 0.0005 11 6 0.8507 -4.7061 0.4691 12 1 0.8869 -4.9026 1.5405 13 6 0.9084 -5.9829 -0.3920 14 7 0.1872 -5.6843 -1.6346 15 6 0.2939 -6.3800 -2.7841 16 8 -0.3575 -6.0531 -3.7534 17 6 1.2182 -7.5676 -2.8629 18 7 1.1554 -8.1469 -4.2071 19 6 2.2039 -8.3608 -5.0293 20 6 1.7274 -8.9082 -6.1714 21 6 0.3402 -9.0326 -6.0430 22 6 -0.5964 -9.5946 -7.0813 23 9 -0.5101 -8.8300 -8.2498 24 9 -0.2409 -10.9181 -7.3626 25 7 -0.0032 -8.5815 -4.8639 26 6 -0.6724 -4.5144 -1.4282 27 6 -0.4701 -4.0247 0.0145 28 1 -1.3136 -4.2676 0.6607 29 6 -0.1347 -2.5245 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 2.7834 -3.7445 0.6883 32 1 2.2679 -3.9812 -1.0055 33 1 0.4261 -6.8096 0.1296 34 1 1.9452 -6.2354 -0.6139 35 1 2.2390 -7.2483 -2.6527 36 1 0.9131 -8.3148 -2.1303 37 1 3.2379 -8.1353 -4.8142 38 1 2.3145 -9.1973 -7.0305 39 1 -1.6182 -9.5650 -6.7029 40 1 -0.3954 -3.7255 -2.1275 41 1 -1.7155 -4.7921 -1.5803 42 1 -0.5482 -2.0626 -0.8959 43 1 -0.5498 -2.0457 0.8875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048855845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:27 Heat of formation + Delta-G solvation = -10.259429 kcal Electronic energy + Delta-G solvation = -29342.351407 eV Core-core repulsion = 24868.483312 eV Total energy + Delta-G solvation = -4473.868094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.19746 -47.20847 -41.59995 -40.28924 -38.31354 -35.12399 -33.96012 -32.35674 -30.83845 -30.35589 -29.80946 -28.83347 -26.41428 -25.63251 -25.04953 -23.03381 -21.64644 -20.85321 -20.29657 -19.53071 -19.44792 -17.78372 -17.55869 -17.40053 -17.37884 -16.77978 -16.33245 -16.13058 -15.53339 -14.82873 -14.81013 -14.34534 -14.04663 -13.94231 -13.76506 -13.67644 -13.57792 -13.40265 -13.19826 -13.05962 -12.84541 -12.43803 -12.21216 -11.90598 -11.82339 -11.59021 -11.55651 -11.00101 -10.98469 -10.87090 -10.49499 -10.25533 -10.17043 -10.11746 -10.00795 -9.75430 -9.62821 -8.94745 -8.69487 -8.54760 -6.92389 -5.79956 -3.14048 1.44484 1.88929 2.28886 2.48634 2.90543 3.35395 3.40333 3.42315 3.45360 3.91471 4.15172 4.26400 4.40543 4.42381 4.61313 4.61930 4.67168 4.81711 4.88439 5.09565 5.16829 5.33562 5.37465 5.40635 5.46340 5.56094 5.59607 5.66786 5.81491 5.99183 6.07323 6.14918 6.21660 6.34704 6.48966 6.56694 6.58564 6.70165 7.23165 7.41998 7.47739 7.51205 7.72615 8.06567 8.18077 9.14024 9.74396 10.37315 11.31662 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.002267 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.592785 B =12349.361287 C =12743.618752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.101 0.899 13 C 0.105 3.895 14 N -0.606 5.606 15 C 0.512 3.488 16 O -0.514 6.514 17 C 0.118 3.882 18 N -0.347 5.347 19 C 0.060 3.940 20 C -0.239 4.239 21 C -0.014 4.014 22 C 0.360 3.640 23 F -0.190 7.190 24 F -0.193 7.193 25 N -0.227 5.227 26 C 0.121 3.879 27 C -0.122 4.122 28 H 0.090 0.910 29 C 0.186 3.814 30 H 0.254 0.746 31 H 0.036 0.964 32 H 0.015 0.985 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.183 0.817 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -21.090 -4.790 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.119 0.881 13 C -0.018 4.018 14 N -0.341 5.341 15 C 0.297 3.703 16 O -0.389 6.389 17 C -0.007 4.007 18 N -0.130 5.130 19 C -0.085 4.085 20 C -0.268 4.268 21 C -0.181 4.181 22 C 0.304 3.696 23 F -0.172 7.172 24 F -0.174 7.174 25 N -0.050 5.050 26 C -0.001 4.001 27 C -0.142 4.142 28 H 0.108 0.892 29 C 0.061 3.939 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.200 0.800 38 H 0.172 0.828 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.145 -20.442 -4.483 20.959 hybrid contribution 1.320 0.854 -0.505 1.651 sum 2.465 -19.588 -4.988 20.363 Atomic orbital electron populations 1.69937 1.04893 1.25244 1.56791 1.24810 0.95749 0.97779 1.01941 0.86104 0.78564 0.83362 0.77627 1.21555 1.21595 1.20669 1.19023 0.90436 0.82288 1.44255 0.90404 1.44214 1.01435 0.99946 1.87244 1.21240 0.93857 0.85967 0.97115 1.22967 0.97280 0.93427 0.99204 0.88078 1.22080 0.96357 0.98338 0.85043 1.48230 1.44420 1.30693 1.10743 1.19946 0.83958 0.83978 0.82425 1.90802 1.44960 1.67979 1.35155 1.21609 1.02626 0.95556 0.80917 1.48050 1.04442 1.47091 1.13456 1.22609 0.94401 1.00478 0.90969 1.21248 0.93373 1.11632 1.00596 1.22605 0.95428 1.04434 0.95644 1.19193 0.98107 0.72819 0.79432 1.93036 1.97581 1.75799 1.50738 1.93018 1.94083 1.36134 1.94202 1.77343 1.06674 1.14827 1.06159 1.22012 0.93513 0.86807 0.97758 1.23155 0.97048 1.00155 0.93845 0.89193 1.21050 0.84614 0.86511 1.01692 0.93598 0.94600 0.96711 0.91415 0.90914 0.85253 0.86460 0.79988 0.82802 0.85511 0.90526 0.92005 0.93232 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.25 55.49 0.57 -25.76 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.23 10.25 -15.06 -0.15 -6.39 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.46 3.38 -171.84 -0.58 -15.04 16 10 C 0.14 2.67 6.49 -3.38 -0.02 2.65 16 11 C -0.11 -1.55 4.16 -88.25 -0.37 -1.91 16 12 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 13 C 0.11 1.13 5.77 -3.33 -0.02 1.11 16 14 N -0.61 -8.48 3.30 -172.27 -0.57 -9.05 16 15 C 0.51 7.41 7.87 -10.98 -0.09 7.33 16 16 O -0.51 -9.94 16.02 5.56 0.09 -9.85 16 17 C 0.12 1.13 6.02 -5.19 -0.03 1.10 16 18 N -0.35 -4.14 3.40 -62.54 -0.21 -4.36 16 19 C 0.06 0.58 11.45 -17.22 -0.20 0.38 16 20 C -0.24 -2.59 10.74 -40.01 -0.43 -3.02 16 21 C -0.01 -0.17 6.65 -82.40 -0.55 -0.72 16 22 C 0.36 3.76 5.80 36.01 0.21 3.97 16 23 F -0.19 -2.25 17.32 2.25 0.04 -2.21 16 24 F -0.19 -2.04 17.32 2.25 0.04 -2.00 16 25 N -0.23 -3.23 11.65 33.67 0.39 -2.84 16 26 C 0.12 2.01 6.21 -3.60 -0.02 1.99 16 27 C -0.12 -2.02 4.01 -88.60 -0.36 -2.37 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 C 0.19 4.21 4.77 -3.57 -0.02 4.19 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.29 7.72 -51.93 -0.40 -0.11 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.61 7.43 -51.93 -0.39 0.23 16 35 H 0.13 0.79 7.81 -51.93 -0.41 0.38 16 36 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.54 7.29 -51.93 -0.38 1.16 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.28 6.73 -51.93 -0.35 0.93 16 43 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -35.49 362.80 -7.58 -43.07 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.65 Total: -2.11 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -2.14 Total: 8.03 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.40 Total: -57.05 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.49 -7.58 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048855845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.808 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds