Wall clock time and date at job start Sat Apr 11 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47338 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47149 * 300.00495 * 3 2 1 6 6 H 1.48494 * 109.47040 * 60.00441 * 3 2 1 7 7 C 1.38810 * 120.00649 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00376 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99448 * 359.97438 * 7 2 1 10 10 C 1.46641 * 125.33452 * 0.02843 * 9 7 2 11 11 C 1.53690 * 108.01264 * 180.81553 * 10 9 7 12 12 H 1.09000 * 113.05151 * 253.81147 * 11 10 9 13 13 C 1.53724 * 109.34030 * 127.55616 * 11 10 9 14 14 N 1.46665 * 107.94106 * 266.25319 * 13 11 10 15 15 C 1.34783 * 125.33608 * 180.54840 * 14 13 11 16 16 O 1.21564 * 119.99718 * 359.97438 * 15 14 13 17 17 C 1.47705 * 119.99706 * 179.97438 * 15 14 13 18 18 C 1.41504 * 126.51490 * 179.97438 * 17 15 14 19 19 C 1.35367 * 105.50330 * 179.70452 * 18 17 15 20 20 N 1.35032 * 107.22837 * 0.26137 * 19 18 17 21 21 C 1.46500 * 124.88635 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.47101 * 125.00577 * 21 20 19 23 23 F 1.39897 * 109.47384 * 175.00533 * 22 21 20 24 24 F 1.39907 * 109.46855 * 294.99959 * 22 21 20 25 25 N 1.28472 * 110.23266 * 0.02562 * 20 19 18 26 26 C 1.46775 * 109.32776 * 0.80654 * 14 13 11 27 27 C 1.54168 * 106.52296 * 341.09750 * 26 14 13 28 28 H 1.09005 * 113.82601 * 265.67666 * 27 26 14 29 29 C 1.46753 * 125.32794 * 180.02562 * 9 7 2 30 30 H 0.96991 * 120.00557 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.75583 * 61.17234 * 10 9 7 32 32 H 1.09001 * 109.75590 * 300.46068 * 10 9 7 33 33 H 1.08995 * 109.76693 * 146.62950 * 13 11 10 34 34 H 1.08996 * 109.77301 * 25.87350 * 13 11 10 35 35 H 1.08002 * 127.25153 * 359.97238 * 18 17 15 36 36 H 1.07998 * 126.38498 * 180.24486 * 19 18 17 37 37 H 1.08997 * 109.47299 * 245.00255 * 21 20 19 38 38 H 1.08998 * 109.47253 * 5.00756 * 21 20 19 39 39 H 1.09000 * 109.47385 * 54.99666 * 22 21 20 40 40 H 1.09000 * 110.02376 * 100.50967 * 26 14 13 41 41 H 1.09000 * 110.03012 * 221.93018 * 26 14 13 42 42 H 1.08998 * 110.00808 * 42.36368 * 29 9 7 43 43 H 1.09004 * 110.00780 * 280.99491 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1344 -2.5244 -0.0006 11 6 -0.4717 -4.0236 0.0202 12 1 -0.8368 -4.3923 -0.9383 13 6 -1.4476 -4.3100 1.1730 14 7 -0.6595 -4.7126 2.3426 15 6 -1.1662 -5.0541 3.5439 16 8 -2.3687 -5.0426 3.7219 17 6 -0.2604 -5.4424 4.6441 18 6 -0.6403 -5.8235 5.9528 19 6 0.5168 -6.0940 6.6012 20 7 1.5241 -5.8793 5.7279 21 6 2.9467 -6.0562 6.0298 22 6 3.5690 -7.0137 5.0115 23 9 4.9485 -7.0943 5.2295 24 9 2.9991 -8.2833 5.1565 25 7 1.0557 -5.4966 4.5946 26 6 0.7677 -4.6793 2.0016 27 6 0.8516 -4.7082 0.4625 28 1 0.9786 -5.7080 0.0471 29 6 1.9383 -3.7215 -0.0005 30 1 -0.4850 0.8399 0.0004 31 1 -0.5472 -2.0661 -0.8994 32 1 -0.5496 -2.0408 0.8836 33 1 -2.1258 -5.1150 0.8904 34 1 -2.0184 -3.4108 1.4047 35 1 -1.6427 -5.8894 6.3495 36 1 0.6158 -6.4203 7.6259 37 1 3.4520 -5.0918 5.9775 38 1 3.0567 -6.4702 7.0321 39 1 3.3813 -6.6442 4.0034 40 1 1.2220 -3.7660 2.3858 41 1 1.2715 -5.5513 2.4184 42 1 2.7816 -3.7445 0.6896 43 1 2.2715 -3.9789 -1.0060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048879641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:30 Heat of formation + Delta-G solvation = -11.860495 kcal Electronic energy + Delta-G solvation = -30397.273579 eV Core-core repulsion = 25923.336057 eV Total energy + Delta-G solvation = -4473.937522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.47881 -47.48105 -42.85369 -39.94744 -38.02899 -34.90124 -34.45331 -32.29240 -31.12077 -30.34670 -29.42015 -29.24304 -25.93001 -25.42158 -24.59908 -23.21714 -21.95075 -21.52896 -20.06087 -19.44759 -19.17661 -18.25177 -18.03164 -17.48105 -17.11176 -16.70087 -16.47363 -15.78901 -15.64474 -14.85204 -14.65951 -14.37788 -14.28216 -14.13544 -13.82886 -13.73292 -13.57856 -13.26144 -13.02643 -12.99951 -12.71434 -12.59024 -12.04677 -12.00076 -11.68255 -11.48294 -11.40341 -10.95620 -10.88121 -10.79015 -10.39911 -10.06874 -10.05108 -9.88154 -9.79571 -9.62833 -9.45257 -9.28642 -8.60757 -8.24512 -6.83257 -5.72615 -3.06292 1.44541 1.90897 2.00068 3.01713 3.26105 3.38695 3.43972 3.46737 3.53756 3.72607 3.81983 4.16643 4.33513 4.48655 4.52646 4.61496 4.75991 4.87784 5.00591 5.18287 5.33720 5.48056 5.51215 5.59734 5.64727 5.72187 5.77564 5.96736 6.05654 6.20837 6.23530 6.34068 6.42073 6.46881 6.58898 6.62834 6.69350 6.85106 7.56567 7.58254 7.63070 7.80533 7.82812 8.26394 8.38102 9.21628 9.82319 10.46091 11.38882 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.003592 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.048695 B = 7793.193337 C = 8834.805088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.121 3.879 14 N -0.593 5.593 15 C 0.611 3.389 16 O -0.540 6.540 17 C 0.008 3.992 18 C -0.175 4.175 19 C -0.010 4.010 20 N -0.293 5.293 21 C 0.077 3.923 22 C 0.254 3.746 23 F -0.193 7.193 24 F -0.198 7.198 25 N -0.258 5.258 26 C 0.120 3.880 27 C -0.114 4.114 28 H 0.088 0.912 29 C 0.147 3.853 30 H 0.252 0.748 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 -15.804 12.373 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.109 0.891 13 C -0.001 4.001 14 N -0.324 5.324 15 C 0.397 3.603 16 O -0.416 6.416 17 C -0.153 4.153 18 C -0.203 4.203 19 C -0.152 4.152 20 N -0.081 5.081 21 C -0.045 4.045 22 C 0.200 3.800 23 F -0.174 7.174 24 F -0.179 7.179 25 N -0.093 5.093 26 C -0.003 4.003 27 C -0.134 4.134 28 H 0.107 0.893 29 C 0.020 3.980 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.183 0.817 36 H 0.201 0.799 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.172 -15.447 11.864 20.153 hybrid contribution -0.018 0.726 0.673 0.990 sum 5.154 -14.722 12.537 20.012 Atomic orbital electron populations 1.69961 1.04855 1.24962 1.56943 1.24793 0.95691 0.97660 1.02140 0.86067 0.78689 0.83881 0.77245 1.20535 1.21732 1.21821 1.19066 0.90433 0.82312 1.43933 0.90372 1.44217 1.01513 0.99937 1.87204 1.21115 0.84548 0.86805 1.01535 1.23160 0.93908 1.00485 0.96741 0.89064 1.21868 0.93904 0.99991 0.84346 1.48063 1.08996 1.64760 1.10629 1.16444 0.86152 0.77609 0.80050 1.90778 1.14087 1.55067 1.81714 1.21967 0.89586 1.07577 0.96214 1.21794 0.99501 1.06244 0.92781 1.22854 0.86915 1.07245 0.98147 1.45131 1.06506 1.48208 1.08293 1.22925 0.77743 1.02926 1.00907 1.22102 0.74778 0.80720 1.02445 1.93033 1.31444 1.96465 1.96473 1.93037 1.84463 1.43147 1.97259 1.73679 1.12075 1.17282 1.06246 1.22188 0.80801 1.02533 0.94751 1.22993 0.97170 0.99007 0.94247 0.89331 1.21145 0.93723 0.85743 0.97384 0.93754 0.93726 0.93073 0.92058 0.90629 0.81714 0.79936 0.85459 0.85549 0.85346 0.90314 0.90707 0.94518 0.96307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.25 55.49 0.57 -26.21 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.23 10.25 -15.06 -0.15 -6.39 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.81 3.37 -171.93 -0.58 -15.39 16 10 C 0.18 4.35 4.75 -3.61 -0.02 4.34 16 11 C -0.12 -2.22 4.02 -88.61 -0.36 -2.58 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.12 2.15 6.23 -3.58 -0.02 2.12 16 14 N -0.59 -10.53 3.31 -173.34 -0.57 -11.10 16 15 C 0.61 11.06 7.84 -12.39 -0.10 10.97 16 16 O -0.54 -11.02 17.23 5.31 0.09 -10.93 16 17 C 0.01 0.12 6.96 -82.77 -0.58 -0.46 16 18 C -0.18 -2.13 10.81 -39.36 -0.43 -2.55 16 19 C -0.01 -0.09 11.40 -17.17 -0.20 -0.29 16 20 N -0.29 -2.89 3.39 -61.33 -0.21 -3.10 16 21 C 0.08 0.47 6.59 -4.04 -0.03 0.44 16 22 C 0.25 1.90 5.37 37.16 0.20 2.10 16 23 F -0.19 -1.58 17.34 2.25 0.04 -1.54 16 24 F -0.20 -1.92 17.32 2.25 0.04 -1.88 16 25 N -0.26 -3.44 8.78 33.42 0.29 -3.14 16 26 C 0.12 1.99 5.20 -3.28 -0.02 1.97 16 27 C -0.11 -1.88 4.19 -88.26 -0.37 -2.25 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 C 0.15 2.86 6.37 -3.43 -0.02 2.83 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.04 1.17 7.45 -51.93 -0.39 0.79 16 32 H 0.05 1.37 6.51 -51.93 -0.34 1.03 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.47 7.44 -51.93 -0.39 1.09 16 35 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.13 0.38 8.04 -51.93 -0.42 -0.03 16 39 H 0.13 0.96 7.96 -51.93 -0.41 0.55 16 40 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 41 H 0.07 1.10 6.49 -51.93 -0.34 0.76 16 42 H 0.04 0.69 7.94 -51.93 -0.41 0.28 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -34.31 359.83 -7.70 -42.02 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.60 Total: -1.04 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -2.18 Total: 9.99 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.50 Total: -58.94 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.31 -7.70 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048879641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.155 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds