Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47265 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47263 * 119.99806 * 3 2 1 7 7 C 1.38818 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99606 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.47122 * 125.77148 * 0.02562 * 9 7 2 11 11 C 1.54566 * 107.25922 * 182.59345 * 10 9 7 12 12 C 1.53908 * 102.54973 * 21.70791 * 11 10 9 13 13 H 1.09000 * 110.55230 * 80.60344 * 12 11 10 14 14 C 1.48211 * 125.76681 * 179.97438 * 9 7 2 15 15 H 1.08997 * 111.52430 * 32.98618 * 14 9 7 16 16 C 1.53015 * 107.11525 * 270.86894 * 14 9 7 17 17 C 1.52737 * 110.80261 * 191.93374 * 16 14 9 18 18 C 1.53463 * 108.43985 * 63.77174 * 17 16 14 19 19 N 1.45118 * 111.89439 * 203.54469 * 12 11 10 20 20 C 1.34773 * 119.57735 * 248.65739 * 19 12 11 21 21 O 1.21632 * 120.00023 * 6.94311 * 20 19 12 22 22 C 1.47158 * 120.00519 * 186.94158 * 20 19 12 23 23 C 1.38412 * 126.88105 * 27.00110 * 22 20 19 24 24 C 1.39668 * 105.35944 * 180.02562 * 23 22 20 25 25 N 1.30863 * 107.86501 * 359.97438 * 24 23 22 26 26 N 1.28444 * 110.92367 * 0.02562 * 25 24 23 27 27 C 1.46504 * 125.18734 * 179.73159 * 26 25 24 28 28 F 1.39899 * 109.47142 * 11.33475 * 27 26 25 29 29 F 1.39905 * 109.47180 * 131.33805 * 27 26 25 30 30 H 0.96993 * 120.00420 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.88218 * 302.00409 * 10 9 7 32 32 H 1.08999 * 109.88864 * 63.01546 * 10 9 7 33 33 H 1.08998 * 110.81236 * 139.90165 * 11 10 9 34 34 H 1.08998 * 110.80894 * 263.42278 * 11 10 9 35 35 H 1.08998 * 109.20848 * 71.59455 * 16 14 9 36 36 H 1.08995 * 109.20779 * 312.27528 * 16 14 9 37 37 H 1.08995 * 109.64507 * 304.08583 * 17 16 14 38 38 H 1.09003 * 109.63952 * 183.45301 * 17 16 14 39 39 H 1.09000 * 109.83803 * 182.38802 * 18 17 16 40 40 H 1.08999 * 109.89268 * 61.46371 * 18 17 16 41 41 H 1.08001 * 127.31970 * 359.97438 * 23 22 20 42 42 H 1.08007 * 126.07182 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.46818 * 251.32982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1382 -2.5360 0.0017 11 6 -0.4462 -4.0491 0.0699 12 6 0.8524 -4.6285 0.6587 13 1 0.8713 -4.5024 1.7412 14 6 1.9339 -3.7396 0.0017 15 1 2.8740 -3.7549 0.5530 16 6 2.1378 -4.1418 -1.4605 17 6 2.4835 -5.6253 -1.5718 18 6 1.2870 -6.4419 -1.0651 19 7 1.0223 -6.0293 0.3198 20 6 0.9301 -6.9636 1.2868 21 8 0.5820 -6.6460 2.4081 22 6 1.2506 -8.3680 0.9861 23 6 2.1131 -8.8323 0.0082 24 6 2.0801 -10.2244 0.1163 25 7 1.2580 -10.5323 1.0869 26 7 0.7564 -9.4748 1.6159 27 6 -0.2041 -9.4584 2.7221 28 9 -0.2938 -10.7379 3.2808 29 9 0.2242 -8.5523 3.6982 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5617 -2.0320 0.8706 32 1 -0.5539 -2.1114 -0.9120 33 1 -1.2901 -4.2431 0.7319 34 1 -0.6331 -4.4514 -0.9257 35 1 2.9498 -3.5514 -1.8849 36 1 1.2222 -3.9440 -2.0178 37 1 3.3605 -5.8439 -0.9628 38 1 2.6845 -5.8775 -2.6131 39 1 1.5255 -7.5051 -1.0950 40 1 0.4125 -6.2418 -1.6842 41 1 2.6886 -8.2432 -0.6906 42 1 2.6346 -10.9229 -0.4929 43 1 -1.1825 -9.1552 2.3493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049495677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = 13.511507 kcal Electronic energy + Delta-G solvation = -31044.801661 eV Core-core repulsion = 26571.964352 eV Total energy + Delta-G solvation = -4472.837309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.50833 -47.58893 -42.90527 -40.29657 -38.00842 -35.56334 -33.15559 -32.52300 -32.48587 -31.16792 -29.06970 -28.21106 -26.63327 -25.26486 -24.38596 -22.83951 -22.34982 -21.97206 -20.69058 -20.09796 -18.66543 -18.42069 -17.95072 -17.59435 -16.98229 -16.94492 -15.95648 -15.62928 -15.31753 -14.82155 -14.72655 -14.56489 -14.33732 -14.28101 -13.91435 -13.82672 -13.52446 -13.39174 -13.22586 -12.93824 -12.53110 -12.47346 -12.12178 -11.96894 -11.45967 -11.24355 -11.05830 -11.00383 -10.83526 -10.68598 -10.52516 -10.26290 -10.14539 -9.88120 -9.81572 -9.69142 -9.66778 -9.32207 -8.66481 -8.42083 -6.90926 -5.74819 -3.09246 0.86358 1.47326 2.20749 2.80550 2.93597 3.24158 3.38798 3.43449 3.44357 3.69878 4.11303 4.17667 4.45406 4.60739 4.75520 4.87081 5.06750 5.09787 5.21108 5.29558 5.32586 5.45234 5.50863 5.56272 5.66241 5.77714 5.91813 5.94272 6.04238 6.10487 6.11889 6.24317 6.28278 6.43311 6.49993 6.64830 6.85094 6.98560 7.35496 7.50674 7.54114 7.56258 7.78038 8.03242 8.19829 9.16433 9.76103 10.41335 11.36311 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.003064 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.019341 B = 9136.473522 C = 9872.024611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.133 3.867 13 H 0.103 0.897 14 C 0.156 3.844 15 H 0.061 0.939 16 C -0.131 4.131 17 C -0.134 4.134 18 C 0.071 3.929 19 N -0.571 5.571 20 C 0.572 3.428 21 O -0.523 6.523 22 C -0.004 4.004 23 C -0.189 4.189 24 C 0.018 3.982 25 N -0.268 5.268 26 N -0.331 5.331 27 C 0.502 3.498 28 F -0.169 7.169 29 F -0.151 7.151 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.182 0.818 42 H 0.195 0.805 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -20.584 -2.803 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.029 3.971 13 H 0.121 0.879 14 C 0.048 3.952 15 H 0.079 0.921 16 C -0.171 4.171 17 C -0.172 4.172 18 C -0.051 4.051 19 N -0.302 5.302 20 C 0.357 3.643 21 O -0.399 6.399 22 C -0.130 4.130 23 C -0.216 4.216 24 C -0.161 4.161 25 N -0.097 5.097 26 N -0.128 5.128 27 C 0.370 3.630 28 F -0.150 7.150 29 F -0.132 7.132 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.199 0.801 42 H 0.212 0.788 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.020 -20.998 -1.403 21.045 hybrid contribution 0.896 1.539 -0.451 1.837 sum 0.876 -19.460 -1.854 19.567 Atomic orbital electron populations 1.69934 1.04880 1.25251 1.56732 1.24793 0.95701 0.97635 1.02070 0.86198 0.78461 0.83180 0.77899 1.21190 1.21617 1.21137 1.18982 0.90402 0.82164 1.44166 0.90447 1.44700 1.01457 0.99265 1.86776 1.21186 0.84331 0.87566 1.01379 1.23021 0.96274 0.99864 0.99820 1.21873 0.96992 0.76957 1.01282 0.87874 1.21452 0.94414 0.86104 0.93273 0.92067 1.22130 1.02081 0.93088 0.99776 1.21932 0.97238 0.97222 1.00845 1.22737 0.99166 1.01405 0.81769 1.47367 1.68765 1.06487 1.07563 1.17042 0.78987 0.83013 0.85255 1.90922 1.46687 1.81213 1.21110 1.21647 1.02999 0.89631 0.98754 1.22641 1.02865 0.95260 1.00882 1.23822 0.99390 0.95280 0.97625 1.73267 1.12589 1.12253 1.11588 1.47024 1.35112 1.03831 1.26850 1.21442 0.90685 0.74289 0.76584 1.93124 1.96190 1.40286 1.85387 1.93288 1.91238 1.66207 1.62489 0.93641 0.92972 0.93923 0.91917 0.92151 0.91981 0.91782 0.91634 0.91010 0.87337 0.91024 0.80137 0.78816 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.33 55.49 0.57 -25.80 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.13 10.29 -15.06 -0.16 -6.28 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.39 2.91 -161.93 -0.47 -14.87 16 10 C 0.18 4.20 5.19 -2.88 -0.01 4.19 16 11 C -0.15 -2.74 6.06 -25.44 -0.15 -2.90 16 12 C 0.13 2.34 3.06 -67.33 -0.21 2.14 16 13 H 0.10 2.08 7.03 -51.93 -0.36 1.71 16 14 C 0.16 3.00 3.61 -66.12 -0.24 2.76 16 15 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.13 -2.10 5.10 -26.86 -0.14 -2.24 16 17 C -0.13 -1.51 5.97 -26.63 -0.16 -1.67 16 18 C 0.07 0.77 5.59 -3.58 -0.02 0.75 16 19 N -0.57 -8.12 2.74 -166.34 -0.46 -8.58 16 20 C 0.57 8.50 7.49 -12.64 -0.09 8.40 16 21 O -0.52 -9.40 13.39 5.25 0.07 -9.33 16 22 C 0.00 -0.05 6.42 -82.06 -0.53 -0.58 16 23 C -0.19 -1.76 8.71 -38.98 -0.34 -2.10 16 24 C 0.02 0.16 12.03 -17.43 -0.21 -0.05 16 25 N -0.27 -3.12 11.51 30.59 0.35 -2.76 16 26 N -0.33 -4.04 3.71 -62.38 -0.23 -4.27 16 27 C 0.50 5.51 6.18 59.85 0.37 5.88 16 28 F -0.17 -1.88 17.10 2.25 0.04 -1.84 16 29 F -0.15 -2.12 14.60 2.25 0.03 -2.08 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 32 H 0.04 1.09 7.59 -51.93 -0.39 0.70 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.01 6.80 -51.93 -0.35 0.65 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.11 7.12 -51.93 -0.37 0.74 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.92 3.01 -51.93 -0.16 0.77 16 40 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 41 H 0.18 1.26 6.06 -52.49 -0.32 0.94 16 42 H 0.19 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.16 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -32.50 343.85 -7.15 -39.65 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.23 Total: -0.03 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.98 Total: 8.06 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.23 Total: -56.27 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.50 -7.15 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049495677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.159 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds