Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48497 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47016 * 300.00272 * 3 2 1 6 6 H 1.48502 * 109.47026 * 59.99988 * 3 2 1 7 7 C 1.38811 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99990 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.48383 * 126.55716 * 359.96656 * 9 7 2 11 11 C 1.56414 * 107.29242 * 173.87111 * 10 9 7 12 12 C 1.53419 * 101.24455 * 338.42987 * 11 10 9 13 13 H 1.09003 * 111.14516 * 280.74940 * 12 11 10 14 14 C 1.45020 * 126.56751 * 179.97438 * 9 7 2 15 15 H 1.09003 * 108.70871 * 95.86240 * 14 9 7 16 16 C 1.51089 * 119.18562 * 331.18500 * 14 9 7 17 17 C 1.53866 * 107.34543 * 176.11966 * 16 14 9 18 18 C 1.52713 * 111.52548 * 56.92471 * 17 16 14 19 19 N 1.45725 * 116.38143 * 152.28760 * 12 11 10 20 20 C 1.34783 * 122.22645 * 8.99362 * 19 12 11 21 21 O 1.21629 * 119.99516 * 351.72787 * 20 19 12 22 22 C 1.47161 * 119.99983 * 171.72859 * 20 19 12 23 23 C 1.38401 * 126.88289 * 333.35505 * 22 20 19 24 24 C 1.39677 * 105.35975 * 180.02562 * 23 22 20 25 25 N 1.30864 * 107.85829 * 0.02562 * 24 23 22 26 26 N 1.28441 * 110.93126 * 359.71005 * 25 24 23 27 27 C 1.46497 * 125.19479 * 180.27785 * 26 25 24 28 28 F 1.39906 * 109.46854 * 127.14469 * 27 26 25 29 29 F 1.39895 * 109.47580 * 247.14628 * 27 26 25 30 30 H 0.97003 * 119.99968 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.96490 * 293.88619 * 10 9 7 32 32 H 1.09000 * 109.96173 * 55.09213 * 10 9 7 33 33 H 1.09000 * 111.57282 * 220.30538 * 11 10 9 34 34 H 1.09005 * 110.79542 * 96.21627 * 11 10 9 35 35 H 1.09007 * 109.88068 * 56.65993 * 16 14 9 36 36 H 1.08997 * 109.88265 * 295.58511 * 16 14 9 37 37 H 1.08997 * 109.07294 * 296.40171 * 17 16 14 38 38 H 1.08997 * 109.06871 * 177.45108 * 17 16 14 39 39 H 1.09004 * 109.16050 * 71.87461 * 18 17 16 40 40 H 1.09001 * 109.16134 * 191.11433 * 18 17 16 41 41 H 1.08004 * 127.32134 * 0.02562 * 23 22 20 42 42 H 1.07994 * 126.07075 * 179.97438 * 24 23 22 43 43 H 1.08994 * 109.46886 * 7.15306 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1486 -2.5576 0.0007 11 6 -0.4408 -4.0859 -0.1588 12 6 0.8710 -4.5777 -0.7840 13 1 0.9035 -4.3606 -1.8516 14 6 1.9023 -3.7187 0.0005 15 1 1.9446 -4.0814 1.0276 16 6 3.2557 -3.9350 -0.6352 17 6 3.6450 -5.4044 -0.3968 18 6 2.5916 -6.3603 -0.9523 19 7 1.2343 -5.9641 -0.5201 20 6 0.3890 -6.8273 0.0774 21 8 -0.6567 -6.4251 0.5507 22 6 0.7315 -8.2563 0.1572 23 6 1.5474 -8.9645 -0.7079 24 6 1.5611 -10.2719 -0.2165 25 7 0.8065 -10.3070 0.8521 26 7 0.3115 -9.1485 1.1025 27 6 -0.5719 -8.8330 2.2277 28 9 -0.0527 -7.7449 2.9374 29 9 -1.8448 -8.5105 1.7452 30 1 -0.4850 0.8401 0.0004 31 1 -0.5656 -2.1881 0.9375 32 1 -0.5853 -2.0176 -0.8394 33 1 -1.2831 -4.2652 -0.8270 34 1 -0.6091 -4.5512 0.8125 35 1 3.9918 -3.2769 -0.1733 36 1 3.1988 -3.7355 -1.7053 37 1 3.7513 -5.5754 0.6744 38 1 4.5992 -5.6036 -0.8844 39 1 2.6380 -6.3502 -2.0413 40 1 2.7996 -7.3688 -0.5949 41 1 2.0637 -8.5865 -1.5780 42 1 2.0983 -11.1059 -0.6432 43 1 -0.6419 -9.6973 2.8881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049495678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 10.946507 kcal Electronic energy + Delta-G solvation = -31476.928962 eV Core-core repulsion = 27003.980426 eV Total energy + Delta-G solvation = -4472.948536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.42271 -47.52078 -42.83406 -40.23500 -37.72124 -35.57246 -33.18428 -32.63280 -32.39721 -31.07767 -28.86671 -28.21467 -26.58218 -25.14541 -24.49766 -22.68130 -22.33531 -21.46729 -20.84240 -19.92023 -19.53477 -18.05239 -17.76788 -17.63797 -16.81184 -16.31498 -15.86717 -15.47942 -15.24779 -14.90418 -14.66240 -14.62846 -14.24841 -14.00596 -13.83518 -13.80500 -13.58056 -13.42075 -13.34334 -12.95395 -12.48675 -12.32307 -12.25704 -11.86376 -11.61982 -11.35139 -11.04551 -10.87817 -10.73805 -10.61176 -10.47788 -10.08885 -10.04795 -9.88098 -9.85978 -9.61989 -9.41821 -9.09968 -8.58075 -8.33695 -6.82751 -5.69615 -3.04102 0.92603 1.49539 2.21463 2.82488 3.07602 3.33809 3.40457 3.45468 3.48292 3.78292 4.16074 4.37741 4.49489 4.55634 4.78742 4.80556 5.03339 5.11409 5.23942 5.33234 5.37142 5.41612 5.56365 5.61234 5.74362 5.82188 5.95254 5.98586 6.05974 6.10343 6.19838 6.28133 6.37560 6.52288 6.70666 6.71981 6.89408 7.16648 7.46911 7.55015 7.60098 7.67599 7.84590 8.17682 8.25388 9.19697 9.83483 10.51553 11.42352 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.003495 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.446538 B = 8009.113148 C = 8853.219590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.139 4.139 12 C 0.118 3.882 13 H 0.084 0.916 14 C 0.160 3.840 15 H 0.018 0.982 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.094 3.906 19 N -0.581 5.581 20 C 0.581 3.419 21 O -0.512 6.512 22 C -0.003 4.003 23 C -0.189 4.189 24 C 0.023 3.977 25 N -0.273 5.273 26 N -0.331 5.331 27 C 0.500 3.500 28 F -0.167 7.167 29 F -0.164 7.164 30 H 0.252 0.748 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.172 0.828 42 H 0.196 0.804 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -22.171 -0.951 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.049 3.951 11 C -0.178 4.178 12 C 0.015 3.985 13 H 0.102 0.898 14 C 0.051 3.949 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.028 4.028 19 N -0.313 5.313 20 C 0.366 3.634 21 O -0.388 6.388 22 C -0.129 4.129 23 C -0.217 4.217 24 C -0.157 4.157 25 N -0.101 5.101 26 N -0.127 5.127 27 C 0.368 3.632 28 F -0.148 7.148 29 F -0.145 7.145 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.190 0.810 42 H 0.212 0.788 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.387 -22.315 0.328 22.573 hybrid contribution 0.780 1.529 -0.758 1.877 sum 4.168 -20.786 -0.431 21.204 Atomic orbital electron populations 1.69958 1.04891 1.24958 1.56796 1.24805 0.95667 0.97631 1.02233 0.86074 0.78683 0.83930 0.77235 1.20533 1.21781 1.21782 1.19032 0.90355 0.82144 1.43914 0.90270 1.44067 1.01783 0.99288 1.86497 1.21877 0.83551 0.88525 1.01107 1.23279 0.94130 0.98284 1.02076 1.22532 0.99102 0.77412 0.99479 0.89849 1.20738 0.91281 0.87164 0.95737 0.96483 1.21455 0.98566 0.94180 1.01326 1.21900 0.97589 0.95652 1.01622 1.22216 0.81296 0.99595 0.99677 1.47674 1.14013 1.11182 1.58477 1.16909 0.84237 0.82776 0.79440 1.90878 1.24649 1.77290 1.45976 1.21961 1.02617 0.93883 0.94482 1.22567 1.02649 0.93864 1.02655 1.23771 1.00032 0.98121 0.93757 1.73118 1.13086 1.04297 1.19626 1.46887 1.37502 1.06281 1.22056 1.21143 0.73059 0.88334 0.80707 1.93186 1.86635 1.58452 1.76562 1.93192 1.38313 1.94127 1.88845 0.93760 0.94105 0.92647 0.92080 0.89067 0.91354 0.91671 0.91858 0.90664 0.91079 0.89013 0.81046 0.78767 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.46 55.49 0.58 -26.62 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.22 9.94 -15.06 -0.15 -6.37 16 8 H 0.08 2.08 7.31 -52.48 -0.38 1.70 16 9 N -0.59 -15.11 3.35 -162.70 -0.55 -15.66 16 10 C 0.17 4.40 5.49 -1.17 -0.01 4.39 16 11 C -0.14 -2.96 5.29 -24.68 -0.13 -3.09 16 12 C 0.12 2.22 3.28 -66.82 -0.22 2.00 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.16 3.32 2.60 -68.38 -0.18 3.14 16 15 H 0.02 0.40 8.03 -51.93 -0.42 -0.02 16 16 C -0.12 -1.95 5.45 -27.24 -0.15 -2.09 16 17 C -0.13 -1.59 5.92 -26.43 -0.16 -1.74 16 18 C 0.09 1.08 5.20 -3.45 -0.02 1.06 16 19 N -0.58 -9.02 2.91 -165.37 -0.48 -9.50 16 20 C 0.58 9.55 7.27 -12.64 -0.09 9.46 16 21 O -0.51 -9.99 11.29 5.25 0.06 -9.94 16 22 C 0.00 -0.04 6.36 -82.06 -0.52 -0.56 16 23 C -0.19 -1.84 8.68 -38.98 -0.34 -2.18 16 24 C 0.02 0.20 12.03 -17.43 -0.21 -0.01 16 25 N -0.27 -2.98 11.90 30.59 0.36 -2.62 16 26 N -0.33 -4.15 3.62 -62.39 -0.23 -4.37 16 27 C 0.50 5.76 5.69 59.85 0.34 6.10 16 28 F -0.17 -2.34 16.44 2.25 0.04 -2.31 16 29 F -0.16 -2.27 16.35 2.25 0.04 -2.23 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.04 1.14 7.81 -51.93 -0.41 0.74 16 32 H 0.06 1.52 7.19 -51.93 -0.37 1.15 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 2.06 5.88 -51.93 -0.31 1.75 16 35 H 0.07 1.20 7.70 -51.92 -0.40 0.80 16 36 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.86 4.46 -51.93 -0.23 0.63 16 41 H 0.17 1.22 6.45 -52.48 -0.34 0.88 16 42 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.17 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -34.26 344.03 -7.31 -41.56 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.37 Total: -0.35 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.92 Total: 9.82 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.31 Total: -58.78 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.26 -7.31 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049495678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.511 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds