Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47272 * 269.99814 * 3 2 1 5 5 H 1.48496 * 109.47163 * 29.99848 * 3 2 1 6 6 H 1.48502 * 109.47036 * 149.99776 * 3 2 1 7 7 C 1.38809 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00257 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.47118 * 125.76801 * 359.96023 * 9 7 2 11 11 C 1.55468 * 107.60387 * 176.70137 * 10 9 7 12 12 C 1.54420 * 102.03347 * 339.51747 * 11 10 9 13 13 H 1.08994 * 110.00638 * 278.30029 * 12 11 10 14 14 C 1.48217 * 125.77021 * 179.97438 * 9 7 2 15 15 H 1.09003 * 111.52648 * 326.11365 * 14 9 7 16 16 C 1.53011 * 107.91236 * 88.75965 * 14 9 7 17 17 C 1.50496 * 112.61279 * 166.12581 * 16 14 9 18 18 C 1.53459 * 109.55046 * 299.00575 * 17 16 14 19 19 N 1.45118 * 111.60943 * 155.94687 * 12 11 10 20 20 C 1.34781 * 119.57543 * 111.34881 * 19 12 11 21 21 O 1.21619 * 119.99935 * 1.09453 * 20 19 12 22 22 C 1.47163 * 119.99972 * 181.08851 * 20 19 12 23 23 C 1.38410 * 126.88469 * 28.01477 * 22 20 19 24 24 C 1.39675 * 105.35971 * 179.91532 * 23 22 20 25 25 N 1.30863 * 107.86057 * 0.35762 * 24 23 22 26 26 N 1.28446 * 110.92910 * 359.77432 * 25 24 23 27 27 C 1.46494 * 125.19116 * 180.02562 * 26 25 24 28 28 F 1.39901 * 109.47387 * 11.91885 * 27 26 25 29 29 F 1.39902 * 109.47391 * 131.92311 * 27 26 25 30 30 H 0.97001 * 120.00067 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88851 * 296.84690 * 10 9 7 32 32 H 1.08996 * 109.89038 * 57.86247 * 10 9 7 33 33 H 1.09002 * 111.55362 * 221.17346 * 11 10 9 34 34 H 1.09005 * 110.46837 * 97.37541 * 11 10 9 35 35 H 1.09001 * 109.21502 * 288.85025 * 16 14 9 36 36 H 1.08997 * 109.21281 * 48.21082 * 16 14 9 37 37 H 1.09000 * 110.61231 * 178.02750 * 17 16 14 38 38 H 1.08998 * 107.55246 * 58.11657 * 17 16 14 39 39 H 1.09000 * 109.83312 * 296.67907 * 18 17 16 40 40 H 1.09000 * 109.83800 * 175.79483 * 18 17 16 41 41 H 1.08002 * 127.31743 * 0.04023 * 23 22 20 42 42 H 1.07996 * 126.06789 * 180.09376 * 24 23 22 43 43 H 1.09001 * 109.47166 * 251.92253 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5359 0.0008 11 6 -0.4572 -4.0550 -0.0846 12 6 0.8581 -4.6288 -0.6548 13 1 0.8809 -4.5043 -1.7373 14 6 1.9339 -3.7396 0.0005 15 1 2.8657 -3.7589 -0.5648 16 6 2.1558 -4.1558 1.4561 17 6 2.4545 -5.6239 1.5991 18 6 1.2682 -6.4429 1.0729 19 7 1.0225 -6.0296 -0.3135 20 6 0.9485 -6.9635 -1.2824 21 8 0.7649 -6.6286 -2.4371 22 6 1.0898 -8.3885 -0.9432 23 6 0.7720 -8.9913 0.2615 24 6 1.0791 -10.3432 0.0912 25 7 1.5464 -10.4990 -1.1211 26 7 1.5668 -9.3805 -1.7523 27 6 2.0301 -9.1968 -3.1298 28 9 2.1880 -10.4461 -3.7393 29 9 1.0889 -8.4459 -3.8423 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5534 -2.1127 0.9155 32 1 -0.5620 -2.0306 -0.8669 33 1 -1.2903 -4.2519 -0.7594 34 1 -0.6577 -4.4588 0.9079 35 1 2.9680 -3.5642 1.8786 36 1 1.2445 -3.9712 2.0249 37 1 2.6408 -5.8777 2.6426 38 1 3.3413 -5.8385 1.0028 39 1 0.3845 -6.2458 1.6797 40 1 1.5091 -7.5055 1.1050 41 1 0.3699 -8.5173 1.1447 42 1 0.9569 -11.1209 0.8305 43 1 2.9853 -8.6717 -3.1249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049495679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = 11.222648 kcal Electronic energy + Delta-G solvation = -31052.017412 eV Core-core repulsion = 26579.080851 eV Total energy + Delta-G solvation = -4472.936562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.50378 -47.58429 -42.89916 -40.31277 -37.99700 -35.54772 -33.19416 -32.62526 -32.47863 -31.16672 -29.04807 -28.23055 -26.63757 -25.29260 -24.45286 -22.84180 -22.49374 -21.77626 -20.67239 -20.11344 -18.76921 -18.41148 -17.85961 -17.58588 -16.98222 -16.96248 -15.99163 -15.67648 -15.15142 -14.82666 -14.75872 -14.53108 -14.34091 -14.18722 -13.92767 -13.82653 -13.71249 -13.34002 -13.29109 -12.94555 -12.56964 -12.48241 -12.14605 -12.00586 -11.50196 -11.29933 -11.01908 -10.93747 -10.83844 -10.63633 -10.61791 -10.22820 -10.12584 -9.86324 -9.81533 -9.69554 -9.66517 -9.32660 -8.67439 -8.43485 -6.92335 -5.75701 -3.10412 0.87589 1.47848 2.21568 2.77335 2.95328 3.24881 3.37740 3.42794 3.44554 3.70217 4.10360 4.17803 4.44311 4.60860 4.77338 4.87196 5.01869 5.12448 5.19413 5.29851 5.32567 5.42972 5.48196 5.54792 5.62412 5.77411 5.90529 5.95529 6.09251 6.10827 6.11714 6.25164 6.27841 6.44705 6.50668 6.63181 6.83075 6.97608 7.34847 7.50300 7.54236 7.56199 7.77686 8.03522 8.18984 9.15607 9.75137 10.40299 11.35361 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.003078 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.641437 B = 9093.725668 C = 9656.611624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.181 3.819 11 C -0.152 4.152 12 C 0.130 3.870 13 H 0.104 0.896 14 C 0.160 3.840 15 H 0.059 0.941 16 C -0.133 4.133 17 C -0.130 4.130 18 C 0.077 3.923 19 N -0.570 5.570 20 C 0.571 3.429 21 O -0.523 6.523 22 C -0.004 4.004 23 C -0.189 4.189 24 C 0.018 3.982 25 N -0.268 5.268 26 N -0.331 5.331 27 C 0.502 3.498 28 F -0.169 7.169 29 F -0.151 7.151 30 H 0.253 0.747 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -20.246 2.376 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.026 3.974 13 H 0.122 0.878 14 C 0.052 3.948 15 H 0.077 0.923 16 C -0.173 4.173 17 C -0.169 4.169 18 C -0.045 4.045 19 N -0.301 5.301 20 C 0.356 3.644 21 O -0.400 6.400 22 C -0.130 4.130 23 C -0.217 4.217 24 C -0.162 4.162 25 N -0.097 5.097 26 N -0.128 5.128 27 C 0.369 3.631 28 F -0.150 7.150 29 F -0.132 7.132 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.196 0.804 42 H 0.212 0.788 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.571 -20.528 0.769 20.851 hybrid contribution -0.089 1.401 0.636 1.541 sum 3.482 -19.127 1.405 19.492 Atomic orbital electron populations 1.69951 1.04875 1.25149 1.56749 1.24797 0.95708 0.97644 1.02055 0.86121 0.78556 0.83460 0.77603 1.21569 1.21683 1.20707 1.19021 0.90420 0.82105 1.44120 0.90384 1.44660 1.01436 0.99196 1.86724 1.21329 0.84223 0.87500 1.01365 1.23283 0.96074 0.99880 0.99883 1.21921 0.96986 0.76967 1.01509 0.87800 1.21244 0.94364 0.86133 0.93097 0.92278 1.21686 1.02269 0.93478 0.99910 1.21495 0.97493 0.97107 1.00792 1.22678 0.99085 1.01013 0.81762 1.47341 1.68689 1.06529 1.07493 1.17043 0.78599 0.83068 0.85680 1.90920 1.49044 1.81365 1.18643 1.21625 1.07257 0.91798 0.92308 1.22663 1.06961 0.94412 0.97619 1.23815 1.01659 0.96896 0.93782 1.73264 1.20339 1.07684 1.08379 1.47019 1.48356 1.05304 1.12151 1.21453 0.91122 0.77779 0.72698 1.93124 1.95795 1.43887 1.82189 1.93291 1.68011 1.75119 1.76755 0.93672 0.93846 0.93015 0.91732 0.92181 0.91814 0.92295 0.90876 0.92255 0.90704 0.87591 0.80386 0.78833 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.33 55.49 0.57 -25.75 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.10 10.29 -15.06 -0.16 -6.26 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.34 2.95 -161.64 -0.48 -14.82 16 10 C 0.18 4.22 5.25 -2.39 -0.01 4.20 16 11 C -0.15 -2.77 6.21 -24.68 -0.15 -2.93 16 12 C 0.13 2.29 3.05 -67.31 -0.21 2.09 16 13 H 0.10 2.08 6.94 -51.93 -0.36 1.72 16 14 C 0.16 3.08 3.60 -66.36 -0.24 2.84 16 15 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 16 C -0.13 -2.16 5.05 -27.98 -0.14 -2.30 16 17 C -0.13 -1.53 6.01 -27.74 -0.17 -1.69 16 18 C 0.08 0.83 5.06 -3.68 -0.02 0.81 16 19 N -0.57 -8.11 2.73 -166.45 -0.45 -8.57 16 20 C 0.57 8.49 7.51 -12.64 -0.09 8.40 16 21 O -0.52 -9.44 13.32 5.26 0.07 -9.37 16 22 C 0.00 -0.04 6.40 -82.06 -0.52 -0.57 16 23 C -0.19 -1.74 8.58 -38.98 -0.33 -2.08 16 24 C 0.02 0.16 12.03 -17.43 -0.21 -0.05 16 25 N -0.27 -3.12 11.51 30.59 0.35 -2.77 16 26 N -0.33 -4.05 3.71 -62.39 -0.23 -4.28 16 27 C 0.50 5.55 6.21 59.84 0.37 5.92 16 28 F -0.17 -1.90 17.10 2.25 0.04 -1.86 16 29 F -0.15 -2.12 14.53 2.25 0.03 -2.09 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.04 1.11 7.60 -51.93 -0.39 0.72 16 32 H 0.05 1.36 7.29 -51.93 -0.38 0.98 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.00 6.92 -51.93 -0.36 0.64 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.02 7.27 -51.93 -0.38 0.64 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.76 7.53 -51.93 -0.39 0.36 16 40 H 0.11 0.91 3.59 -51.93 -0.19 0.72 16 41 H 0.18 1.18 6.11 -52.49 -0.32 0.86 16 42 H 0.19 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.16 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -32.53 344.07 -7.19 -39.72 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.27 Total: -0.16 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.98 Total: 8.15 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.24 Total: -56.19 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.53 -7.19 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049495679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.941 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds