Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48493 * 109.47155 * 239.99589 * 3 2 1 5 5 H 1.48503 * 109.47383 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47273 * 119.99330 * 3 2 1 7 7 C 1.38809 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00189 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.48373 * 126.56457 * 0.02562 * 9 7 2 11 11 C 1.55475 * 106.97785 * 185.50406 * 10 9 7 12 12 C 1.53431 * 101.66954 * 22.59717 * 11 10 9 13 13 H 1.09004 * 111.74781 * 78.22056 * 12 11 10 14 14 C 1.45026 * 126.55987 * 179.97438 * 9 7 2 15 15 H 1.09005 * 108.26519 * 263.93917 * 14 9 7 16 16 C 1.51086 * 119.18574 * 28.81323 * 14 9 7 17 17 C 1.53870 * 107.34796 * 183.87716 * 16 14 9 18 18 C 1.53148 * 111.46416 * 302.93299 * 17 16 14 19 19 N 1.45722 * 116.38175 * 207.26232 * 12 11 10 20 20 C 1.34774 * 122.23024 * 350.09524 * 19 12 11 21 21 O 1.21635 * 119.99690 * 5.97655 * 20 19 12 22 22 C 1.47158 * 120.00343 * 185.97866 * 20 19 12 23 23 C 1.38409 * 126.88397 * 18.78986 * 22 20 19 24 24 C 1.39666 * 105.36098 * 180.02562 * 23 22 20 25 25 N 1.30863 * 107.86422 * 0.02562 * 24 23 22 26 26 N 1.28453 * 110.92521 * 359.97438 * 25 24 23 27 27 C 1.46495 * 125.18843 * 179.72784 * 26 25 24 28 28 F 1.39910 * 109.46635 * 112.05940 * 27 26 25 29 29 F 1.39901 * 109.47462 * 232.05635 * 27 26 25 30 30 H 0.97002 * 119.99262 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.95930 * 304.88260 * 10 9 7 32 32 H 1.09001 * 109.96558 * 66.08795 * 10 9 7 33 33 H 1.09000 * 110.98433 * 264.50267 * 11 10 9 34 34 H 1.08999 * 110.98952 * 140.69437 * 11 10 9 35 35 H 1.09008 * 109.88084 * 303.33466 * 16 14 9 36 36 H 1.09000 * 109.88552 * 64.41520 * 16 14 9 37 37 H 1.08995 * 109.06846 * 63.59717 * 17 16 14 38 38 H 1.08998 * 109.07205 * 182.61483 * 17 16 14 39 39 H 1.09005 * 109.31929 * 288.41230 * 18 17 16 40 40 H 1.09005 * 109.23703 * 169.08777 * 18 17 16 41 41 H 1.08004 * 127.31776 * 359.97438 * 23 22 20 42 42 H 1.08005 * 126.07197 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47418 * 352.06114 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1484 -2.5576 -0.0005 11 6 -0.4304 -4.0798 0.1426 12 6 0.8707 -4.5773 0.7858 13 1 0.9024 -4.3595 1.8534 14 6 1.9024 -3.7186 0.0005 15 1 1.9380 -4.0755 -1.0288 16 6 3.2559 -3.9349 0.6363 17 6 3.6452 -5.4043 0.3979 18 6 2.5897 -6.3617 0.9588 19 7 1.2341 -5.9638 0.5230 20 6 0.3890 -6.8276 -0.0738 21 8 -0.6757 -6.4333 -0.5103 22 6 0.7543 -8.2478 -0.1973 23 6 1.7158 -8.9248 0.5327 24 6 1.6892 -10.2362 0.0530 25 7 0.7781 -10.3025 -0.8840 26 7 0.2131 -9.1618 -1.0561 27 6 -0.8453 -8.8822 -2.0296 28 9 -2.0409 -8.6140 -1.3543 29 9 -0.4871 -7.7723 -2.8023 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5857 -2.0176 0.8394 32 1 -0.5649 -2.1880 -0.9376 33 1 -0.5852 -4.5415 -0.8326 34 1 -1.2831 -4.2591 0.7974 35 1 3.9919 -3.2768 0.1742 36 1 3.1990 -3.7354 1.7063 37 1 3.7514 -5.5752 -0.6733 38 1 4.5989 -5.6038 0.8865 39 1 2.6331 -6.3485 2.0479 40 1 2.7973 -7.3719 0.6056 41 1 2.3521 -8.5238 1.3079 42 1 2.3108 -11.0509 0.3942 43 1 -0.9806 -9.7479 -2.6780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049495680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 19.185079 kcal Electronic energy + Delta-G solvation = -31471.235557 eV Core-core repulsion = 26998.644273 eV Total energy + Delta-G solvation = -4472.591285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.39398 -47.49517 -42.84888 -40.23932 -37.72408 -35.63403 -33.19366 -32.62979 -32.40192 -31.08941 -28.87457 -28.22678 -26.58771 -25.17807 -24.48843 -22.69369 -22.38265 -21.45801 -20.85223 -19.88862 -19.52261 -18.03715 -17.74768 -17.63743 -16.79950 -16.33332 -15.85701 -15.52361 -15.35154 -14.89655 -14.71226 -14.62382 -14.22245 -13.99228 -13.78904 -13.74488 -13.51941 -13.40583 -13.34263 -12.92533 -12.49960 -12.32780 -12.22375 -11.85561 -11.58706 -11.37382 -10.97746 -10.85650 -10.70105 -10.54390 -10.49428 -10.12201 -10.04357 -9.87401 -9.86666 -9.60816 -9.43220 -9.13265 -8.57453 -8.32496 -6.82249 -5.68901 -3.03398 0.90198 1.50508 2.20679 2.85276 3.11935 3.35505 3.41298 3.45538 3.47153 3.79748 4.16521 4.39298 4.50134 4.55187 4.73723 4.80711 5.01230 5.13169 5.24228 5.30603 5.34821 5.41478 5.57318 5.61753 5.74591 5.83322 5.94940 5.98618 6.06752 6.09672 6.21790 6.27804 6.37940 6.52910 6.70402 6.73633 6.89190 7.15922 7.46844 7.55202 7.59763 7.67810 7.84744 8.18530 8.26189 9.20198 9.84058 10.52169 11.42998 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.003497 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.373498 B = 8004.397938 C = 8940.184714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.135 4.135 12 C 0.118 3.882 13 H 0.085 0.915 14 C 0.160 3.840 15 H 0.018 0.982 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.080 3.920 19 N -0.579 5.579 20 C 0.580 3.420 21 O -0.514 6.514 22 C -0.002 4.002 23 C -0.198 4.198 24 C 0.023 3.977 25 N -0.272 5.272 26 N -0.330 5.330 27 C 0.502 3.498 28 F -0.166 7.166 29 F -0.165 7.165 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.181 0.819 42 H 0.196 0.804 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -22.184 0.870 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.049 3.951 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.102 0.898 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.042 4.042 19 N -0.312 5.312 20 C 0.365 3.635 21 O -0.390 6.390 22 C -0.128 4.128 23 C -0.225 4.225 24 C -0.157 4.157 25 N -0.101 5.101 26 N -0.127 5.127 27 C 0.369 3.631 28 F -0.147 7.147 29 F -0.146 7.146 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.198 0.802 42 H 0.212 0.788 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.142 -22.347 -0.287 22.568 hybrid contribution 0.888 1.566 0.686 1.926 sum 4.030 -20.781 0.399 21.172 Atomic orbital electron populations 1.69940 1.04888 1.25184 1.56635 1.24802 0.95661 0.97610 1.02196 0.86228 0.78473 0.83369 0.77837 1.21218 1.21614 1.21186 1.18937 0.90296 0.82205 1.44170 0.90404 1.44077 1.01791 0.99279 1.86543 1.21737 0.83608 0.88637 1.01155 1.23064 0.94325 0.98122 1.01799 1.22538 0.99185 0.77397 0.99432 0.89754 1.20770 0.91307 0.87200 0.95709 0.96455 1.21448 0.98526 0.94230 1.01306 1.21972 0.97549 0.95605 1.01574 1.22647 0.81420 1.00330 0.99769 1.47643 1.14120 1.11114 1.58279 1.16887 0.84468 0.82718 0.79393 1.90887 1.23275 1.77323 1.47512 1.21940 0.99770 0.93696 0.97441 1.22809 1.01121 0.94148 1.04438 1.23795 0.98282 0.97922 0.95696 1.73127 1.10936 1.05428 1.20602 1.46894 1.29836 1.06615 1.29323 1.21128 0.73020 0.88364 0.80582 1.93183 1.44740 1.95140 1.81632 1.93191 1.91394 1.56761 1.73233 0.93662 0.92535 0.94203 0.89358 0.92114 0.91381 0.91679 0.91802 0.90718 0.91017 0.87925 0.80229 0.78752 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 10.46 55.49 0.58 -26.66 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.04 7.31 -52.48 -0.38 1.66 16 9 N -0.59 -15.14 3.35 -163.26 -0.55 -15.68 16 10 C 0.17 4.38 5.47 -1.69 -0.01 4.37 16 11 C -0.13 -2.87 5.12 -25.19 -0.13 -3.00 16 12 C 0.12 2.22 3.33 -66.79 -0.22 2.00 16 13 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 14 C 0.16 3.30 2.57 -68.34 -0.18 3.13 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -1.94 5.45 -27.24 -0.15 -2.09 16 17 C -0.13 -1.56 5.95 -26.20 -0.16 -1.72 16 18 C 0.08 0.90 5.33 -3.23 -0.02 0.89 16 19 N -0.58 -8.99 2.91 -165.08 -0.48 -9.47 16 20 C 0.58 9.53 7.42 -12.64 -0.09 9.44 16 21 O -0.51 -10.00 10.94 5.25 0.06 -9.94 16 22 C 0.00 -0.03 6.58 -82.06 -0.54 -0.57 16 23 C -0.20 -1.90 8.83 -38.99 -0.34 -2.25 16 24 C 0.02 0.20 12.03 -17.43 -0.21 -0.01 16 25 N -0.27 -2.98 11.90 30.59 0.36 -2.62 16 26 N -0.33 -4.15 3.62 -62.39 -0.23 -4.38 16 27 C 0.50 5.80 5.68 59.84 0.34 6.14 16 28 F -0.17 -2.28 16.53 2.25 0.04 -2.25 16 29 F -0.16 -2.34 16.02 2.25 0.04 -2.30 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 31 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 32 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 33 H 0.09 1.99 6.01 -51.93 -0.31 1.68 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.19 7.70 -51.92 -0.40 0.79 16 36 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.93 3.64 -51.93 -0.19 0.74 16 41 H 0.18 1.23 5.63 -52.48 -0.30 0.94 16 42 H 0.20 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.17 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -34.36 342.48 -7.28 -41.64 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.29 Total: -0.19 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -1.95 Total: 9.65 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.31 Total: -58.81 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.36 -7.28 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049495680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.830 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds