Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48499 * 109.46942 * 269.99670 * 3 2 1 5 5 H 1.48501 * 109.47478 * 29.99248 * 3 2 1 6 6 H 1.48493 * 109.47329 * 149.99564 * 3 2 1 7 7 C 1.38808 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00060 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99876 * 0.02562 * 7 2 1 10 10 C 1.48386 * 126.56321 * 359.96920 * 9 7 2 11 11 C 1.55462 * 106.97682 * 185.56056 * 10 9 7 12 12 C 1.53425 * 101.67648 * 22.59649 * 11 10 9 13 13 H 1.09005 * 111.14791 * 78.81939 * 12 11 10 14 14 C 1.45576 * 126.06771 * 180.90393 * 9 7 2 15 15 H 1.08996 * 108.05596 * 264.18710 * 14 9 7 16 16 C 1.51082 * 120.04462 * 28.95215 * 14 9 7 17 17 C 1.53880 * 107.33624 * 184.12346 * 16 14 9 18 18 C 1.53184 * 111.45645 * 302.92171 * 17 16 14 19 19 N 1.45730 * 116.37393 * 207.28324 * 12 11 10 20 20 C 1.34774 * 122.22846 * 350.97447 * 19 12 11 21 21 O 1.21574 * 119.99981 * 5.64728 * 20 19 12 22 22 C 1.47710 * 120.00081 * 185.64780 * 20 19 12 23 23 C 1.41500 * 126.52050 * 175.16680 * 22 20 19 24 24 C 1.35363 * 105.50618 * 179.97438 * 23 22 20 25 25 N 1.35041 * 107.22876 * 0.02562 * 24 23 22 26 26 C 1.46490 * 124.88529 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.47120 * 209.99949 * 26 25 24 28 28 F 1.39906 * 109.47102 * 329.99716 * 26 25 24 29 29 N 1.28469 * 110.22969 * 359.97438 * 25 24 23 30 30 H 0.97001 * 119.99915 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.95949 * 66.17548 * 10 9 7 32 32 H 1.09006 * 109.98855 * 304.95639 * 10 9 7 33 33 H 1.09006 * 110.98743 * 264.50407 * 11 10 9 34 34 H 1.08994 * 110.99333 * 140.69878 * 11 10 9 35 35 H 1.08998 * 109.88219 * 303.57723 * 16 14 9 36 36 H 1.08996 * 109.88491 * 64.59628 * 16 14 9 37 37 H 1.09002 * 109.06529 * 63.59785 * 17 16 14 38 38 H 1.08994 * 109.06582 * 182.61793 * 17 16 14 39 39 H 1.08995 * 109.33334 * 288.43468 * 18 17 16 40 40 H 1.09003 * 109.24374 * 169.09917 * 18 17 16 41 41 H 1.08001 * 127.24721 * 359.96532 * 23 22 20 42 42 H 1.08001 * 126.38614 * 180.25873 * 24 23 22 43 43 H 1.09000 * 109.47748 * 89.99878 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1484 -2.5576 0.0006 11 6 -0.4301 -4.0797 0.1447 12 6 0.8713 -4.5770 0.7872 13 1 0.8890 -4.3632 1.8559 14 6 1.9162 -3.7185 0.0196 15 1 1.9718 -4.0782 -1.0078 16 6 3.2600 -3.9404 0.6735 17 6 3.6486 -5.4101 0.4355 18 6 2.5825 -6.3667 0.9786 19 7 1.2346 -5.9636 0.5242 20 6 0.3955 -6.8227 -0.0876 21 8 -0.6640 -6.4252 -0.5319 22 6 0.7633 -8.2473 -0.2184 23 6 -0.0467 -9.2812 -0.7449 24 6 0.7033 -10.4051 -0.6644 25 7 1.8892 -10.0565 -0.1206 26 6 2.9951 -10.9809 0.1411 27 9 3.7274 -10.5313 1.2451 28 9 2.4840 -12.2556 0.4083 29 7 1.9085 -8.7972 0.1332 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5655 -2.1890 -0.9366 32 1 -0.5856 -2.0172 0.8403 33 1 -0.5856 -4.5420 -0.8302 34 1 -1.2824 -4.2588 0.8002 35 1 4.0040 -3.2828 0.2240 36 1 3.1889 -3.7432 1.7431 37 1 3.7693 -5.5777 -0.6348 38 1 4.5948 -5.6139 0.9367 39 1 2.6105 -6.3570 2.0682 40 1 2.7921 -7.3763 0.6253 41 1 -1.0519 -9.1923 -1.1299 42 1 0.4096 -11.3954 -0.9799 43 1 3.6455 -11.0260 -0.7324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049506643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = 14.654574 kcal Electronic energy + Delta-G solvation = -30574.725962 eV Core-core repulsion = 26101.938220 eV Total energy + Delta-G solvation = -4472.787742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95303 -48.05292 -42.97563 -40.07348 -37.60249 -35.34786 -33.29593 -32.55997 -32.08932 -31.10826 -28.96800 -28.10515 -27.05562 -24.84964 -24.37868 -22.71084 -22.07035 -21.35669 -20.74897 -19.60979 -19.26052 -18.85099 -18.71255 -17.83658 -16.82095 -16.25367 -15.90017 -15.49421 -15.00494 -14.89090 -14.82098 -14.58140 -14.39588 -14.28923 -14.03870 -13.75223 -13.64241 -13.49604 -13.22431 -12.92612 -12.76830 -12.39715 -12.15917 -11.83457 -11.68127 -11.33373 -10.89061 -10.81681 -10.62208 -10.42106 -10.19419 -10.02808 -9.84110 -9.79786 -9.74948 -9.57425 -9.55942 -9.06930 -8.52512 -8.16172 -6.76293 -5.64136 -2.97977 1.12543 1.37070 1.83609 2.87666 3.15026 3.38380 3.43646 3.44634 3.48892 3.50865 3.81728 4.27883 4.33135 4.54900 4.75904 5.02909 5.24980 5.26697 5.39256 5.44521 5.50786 5.56642 5.64407 5.72130 5.84098 5.93272 6.10279 6.11403 6.16380 6.22590 6.38166 6.42481 6.50435 6.63156 6.79671 6.85429 6.96922 7.26711 7.39424 7.63993 7.71030 7.76104 7.90298 8.31101 8.40126 9.25774 9.89133 10.57272 11.47845 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002834 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.725628 B = 9876.447080 C =10784.578735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.137 4.137 12 C 0.117 3.883 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.019 0.981 16 C -0.116 4.116 17 C -0.125 4.125 18 C 0.086 3.914 19 N -0.583 5.583 20 C 0.598 3.402 21 O -0.520 6.520 22 C 0.021 3.979 23 C -0.168 4.168 24 C -0.002 4.002 25 N -0.358 5.358 26 C 0.504 3.496 27 F -0.167 7.167 28 F -0.176 7.176 29 N -0.250 5.250 30 H 0.252 0.748 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.171 0.829 42 H 0.189 0.811 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 -26.117 -0.046 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.051 3.949 11 C -0.175 4.175 12 C 0.013 3.987 13 H 0.098 0.902 14 C 0.050 3.950 15 H 0.036 0.964 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.038 4.038 19 N -0.315 5.315 20 C 0.383 3.617 21 O -0.394 6.394 22 C -0.142 4.142 23 C -0.195 4.195 24 C -0.142 4.142 25 N -0.155 5.155 26 C 0.371 3.629 27 F -0.148 7.148 28 F -0.157 7.157 29 N -0.082 5.082 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.189 0.811 42 H 0.206 0.794 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.657 -25.565 0.227 26.418 hybrid contribution -0.181 0.544 -0.034 0.574 sum 6.476 -25.021 0.193 25.846 Atomic orbital electron populations 1.69950 1.04853 1.24970 1.56996 1.24800 0.95668 0.97568 1.02423 0.86155 0.78560 0.83747 0.77511 1.21698 1.21743 1.20758 1.19006 0.90348 0.82311 1.43650 0.90402 1.44258 1.01725 0.99320 1.86533 1.21714 0.83448 0.88706 1.01064 1.23076 0.94393 0.98120 1.01900 1.22477 0.98806 0.78102 0.99348 0.90152 1.20847 0.91336 0.87097 0.95769 0.96388 1.21446 0.98484 0.94448 1.01138 1.21945 0.97661 0.95363 1.01372 1.22532 0.80862 1.01135 0.99223 1.47848 1.15361 1.11159 1.57114 1.16906 0.83874 0.82176 0.78699 1.90802 1.23968 1.76218 1.48432 1.22532 0.91429 0.96211 1.04039 1.21917 1.02049 0.90043 1.05482 1.22859 0.85707 1.01822 1.03780 1.46957 1.14105 1.06987 1.47429 1.21493 0.80510 0.72155 0.88762 1.93164 1.75955 1.88898 1.56771 1.93147 1.88237 1.39083 1.95236 1.73459 1.23230 0.91043 1.20515 0.93775 0.94174 0.92672 0.89237 0.92121 0.91553 0.91857 0.92042 0.91079 0.92058 0.86056 0.81118 0.79396 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 10.46 55.49 0.58 -27.02 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.31 9.95 -15.06 -0.15 -6.46 16 8 H 0.08 2.09 7.36 -52.49 -0.39 1.71 16 9 N -0.59 -15.55 3.36 -162.89 -0.55 -16.10 16 10 C 0.18 4.50 5.48 -1.69 -0.01 4.49 16 11 C -0.14 -2.96 5.17 -25.20 -0.13 -3.09 16 12 C 0.12 2.32 3.28 -66.80 -0.22 2.10 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.16 3.43 2.62 -68.07 -0.18 3.25 16 15 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 16 C -0.12 -2.09 5.50 -27.24 -0.15 -2.24 16 17 C -0.12 -1.75 5.94 -26.18 -0.16 -1.91 16 18 C 0.09 1.21 6.25 -3.21 -0.02 1.19 16 19 N -0.58 -9.95 2.91 -164.86 -0.48 -10.43 16 20 C 0.60 10.25 7.72 -12.39 -0.10 10.16 16 21 O -0.52 -10.23 13.63 5.30 0.07 -10.16 16 22 C 0.02 0.29 6.93 -82.76 -0.57 -0.28 16 23 C -0.17 -1.80 10.81 -39.37 -0.43 -2.22 16 24 C 0.00 -0.01 10.98 -17.16 -0.19 -0.20 16 25 N -0.36 -3.12 3.68 -66.62 -0.24 -3.36 16 26 C 0.50 2.66 6.56 59.84 0.39 3.05 16 27 F -0.17 -1.28 17.26 2.25 0.04 -1.25 16 28 F -0.18 -0.95 16.96 2.25 0.04 -0.91 16 29 N -0.25 -2.97 8.17 33.42 0.27 -2.70 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.04 1.13 7.81 -51.93 -0.41 0.72 16 32 H 0.06 1.54 7.19 -51.93 -0.37 1.16 16 33 H 0.09 2.03 5.96 -51.93 -0.31 1.72 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.23 7.74 -51.93 -0.40 0.82 16 36 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 1.58 4.10 -72.34 -0.30 1.29 16 41 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.16 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -34.46 349.53 -7.55 -42.01 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.53 Total: -0.22 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.00 Total: 7.49 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.42 Total: -59.60 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.08 Total: -2.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.46 -7.55 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049506643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.664 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds