Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00330 * 2 1 4 4 H 1.48496 * 109.47196 * 270.00647 * 3 2 1 5 5 H 1.48502 * 109.46795 * 30.00358 * 3 2 1 6 6 H 1.48497 * 109.47571 * 150.00123 * 3 2 1 7 7 C 1.38818 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99849 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.48389 * 126.56334 * 0.03911 * 9 7 2 11 11 C 1.55467 * 106.97756 * 174.44220 * 10 9 7 12 12 C 1.53434 * 101.67084 * 337.40335 * 11 10 9 13 13 H 1.08999 * 111.14295 * 282.01762 * 12 11 10 14 14 C 1.45028 * 126.56500 * 180.02562 * 9 7 2 15 15 H 1.08995 * 108.70575 * 96.53395 * 14 9 7 16 16 C 1.51080 * 119.18912 * 331.25251 * 14 9 7 17 17 C 1.53878 * 107.34263 * 176.11647 * 16 14 9 18 18 C 1.52710 * 111.52526 * 56.93018 * 17 16 14 19 19 N 1.45614 * 116.39356 * 152.70775 * 12 11 10 20 20 C 1.34783 * 122.15786 * 9.94611 * 19 12 11 21 21 O 1.21566 * 119.99983 * 354.24373 * 20 19 12 22 22 C 1.47708 * 119.99597 * 174.24052 * 20 19 12 23 23 C 1.41507 * 126.51692 * 184.54703 * 22 20 19 24 24 C 1.35360 * 105.50439 * 179.89820 * 23 22 20 25 25 C 1.50703 * 126.38777 * 180.15218 * 24 23 22 26 26 F 1.39895 * 109.47583 * 210.26836 * 25 24 23 27 27 F 1.39901 * 109.47329 * 330.27341 * 25 24 23 28 28 N 1.35036 * 107.22746 * 0.36147 * 24 23 22 29 29 H 0.97008 * 124.88336 * 179.75841 * 28 24 23 30 30 N 1.28460 * 110.23209 * 359.76218 * 28 24 23 31 31 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.95607 * 293.82426 * 10 9 7 33 33 H 1.09002 * 109.95847 * 55.05863 * 10 9 7 34 34 H 1.09002 * 110.98893 * 95.49337 * 11 10 9 35 35 H 1.08995 * 110.98778 * 219.30865 * 11 10 9 36 36 H 1.09001 * 109.88395 * 56.65993 * 16 14 9 37 37 H 1.09001 * 109.88444 * 295.57348 * 16 14 9 38 38 H 1.09003 * 109.06442 * 296.40595 * 17 16 14 39 39 H 1.09005 * 109.06901 * 177.46030 * 17 16 14 40 40 H 1.09007 * 109.16289 * 71.86585 * 18 17 16 41 41 H 1.08999 * 109.16640 * 191.10944 * 18 17 16 42 42 H 1.07999 * 127.24764 * 0.02562 * 23 22 20 43 43 H 1.09005 * 109.46885 * 90.26762 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1486 -2.5577 -0.0031 11 6 -0.4302 -4.0797 -0.1479 12 6 0.8719 -4.5767 -0.7894 13 1 0.8969 -4.3495 -1.8552 14 6 1.9024 -3.7187 -0.0017 15 1 1.9328 -4.0866 1.0238 16 6 3.2569 -3.9345 -0.6351 17 6 3.6456 -5.4043 -0.3971 18 6 2.5933 -6.3596 -0.9555 19 7 1.2352 -5.9622 -0.5269 20 6 0.3881 -6.8256 0.0677 21 8 -0.6785 -6.4318 0.4978 22 6 0.7558 -8.2504 0.1966 23 6 -0.0586 -9.2871 0.7107 24 6 0.6922 -10.4105 0.6308 25 6 0.2757 -11.7961 1.0523 26 9 1.4002 -12.5129 1.4750 27 9 -0.6431 -11.7073 2.1036 28 7 1.8858 -10.0574 0.1072 29 1 2.6214 -10.6677 -0.0584 30 7 1.9071 -8.7970 -0.1401 31 1 -0.4850 0.8400 0.0004 32 1 -0.5664 -2.1894 0.9339 33 1 -0.5844 -2.0170 -0.8432 34 1 -0.5866 -4.5423 0.8267 35 1 -1.2818 -4.2584 -0.8043 36 1 3.9921 -3.2769 -0.1713 37 1 3.2020 -3.7343 -1.7052 38 1 3.7498 -5.5760 0.6742 39 1 4.6009 -5.6032 -0.8830 40 1 2.6417 -6.3485 -2.0445 41 1 2.8005 -7.3685 -0.5987 42 1 -1.0677 -9.2005 1.0858 43 1 -0.1862 -12.3091 0.2086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049713163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = -5.177549 kcal Electronic energy + Delta-G solvation = -30240.691565 eV Core-core repulsion = 25767.043838 eV Total energy + Delta-G solvation = -4473.647728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.61913 -47.64451 -43.13834 -40.12358 -37.64685 -35.40202 -32.79059 -32.57660 -32.22007 -31.75927 -28.91432 -28.15344 -26.70594 -25.41498 -24.41188 -23.07262 -21.88952 -21.39613 -20.76323 -19.63803 -19.37643 -18.52296 -18.19209 -17.60873 -17.04554 -16.39416 -16.02890 -15.83290 -15.17473 -14.80450 -14.60111 -14.49521 -14.31270 -14.17519 -14.00758 -13.87431 -13.64795 -13.46962 -13.24633 -12.96165 -12.41904 -12.20805 -12.09551 -11.83490 -11.70670 -11.34958 -10.91752 -10.81175 -10.64479 -10.42838 -10.22225 -10.03217 -9.86991 -9.85130 -9.78979 -9.69192 -9.56002 -9.10939 -8.53971 -8.18468 -6.77679 -5.65492 -2.99413 1.13112 1.58232 2.16190 2.91458 3.27469 3.39557 3.43222 3.48026 3.50195 3.52748 3.91358 4.14972 4.25125 4.53868 4.72868 4.99697 5.05007 5.23625 5.30154 5.42852 5.46412 5.55460 5.66602 5.73197 5.84026 5.92361 6.01846 6.09521 6.16795 6.30255 6.36633 6.45239 6.49507 6.62547 6.78246 6.84901 6.95923 7.25038 7.36670 7.63129 7.68871 7.74326 7.89162 8.29874 8.37463 9.24246 9.88024 10.56707 11.46615 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002590 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.273131 B =10809.906126 C =11482.594729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.136 4.136 12 C 0.114 3.886 13 H 0.082 0.918 14 C 0.160 3.840 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.126 4.126 18 C 0.087 3.913 19 N -0.583 5.583 20 C 0.599 3.401 21 O -0.519 6.519 22 C 0.004 3.996 23 C -0.128 4.128 24 C -0.075 4.075 25 C 0.352 3.648 26 F -0.199 7.199 27 F -0.183 7.183 28 N -0.365 5.365 29 H 0.449 0.551 30 N -0.236 5.236 31 H 0.252 0.748 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.174 0.826 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -26.313 -2.291 26.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.174 4.174 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.165 4.165 18 C -0.036 4.036 19 N -0.314 5.314 20 C 0.384 3.616 21 O -0.394 6.394 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.202 4.202 25 C 0.297 3.703 26 F -0.181 7.181 27 F -0.164 7.164 28 N -0.080 5.080 29 H 0.294 0.706 30 N -0.072 5.072 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.191 0.809 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.104 -25.577 -2.432 26.018 hybrid contribution 0.293 0.375 0.282 0.553 sum 4.398 -25.202 -2.150 25.673 Atomic orbital electron populations 1.69948 1.04858 1.25001 1.56911 1.24801 0.95672 0.97584 1.02377 0.86150 0.78583 0.83718 0.77483 1.21679 1.21723 1.20774 1.18989 0.90326 0.82229 1.43755 0.90386 1.44088 1.01832 0.99314 1.86489 1.21737 0.83589 0.88736 1.01090 1.23071 0.94443 0.98076 1.01808 1.22463 0.98995 0.78127 0.99392 0.89970 1.20760 0.91405 0.87103 0.95718 0.96479 1.21446 0.98459 0.94392 1.01187 1.21879 0.97727 0.95509 1.01416 1.22412 0.80726 1.01096 0.99408 1.47773 1.14461 1.11076 1.58118 1.16858 0.84005 0.82157 0.78620 1.90812 1.23647 1.76515 1.48385 1.22336 0.91381 0.96257 1.05600 1.21590 1.02139 0.88928 1.02925 1.21812 0.90554 0.97611 1.10215 1.19678 0.77066 0.86157 0.87418 1.93028 1.53782 1.79370 1.91875 1.93075 1.66116 1.96656 1.60539 1.43352 1.12714 1.06789 1.45127 0.70595 1.73474 1.22383 0.91609 1.19748 0.93754 0.94227 0.92581 0.89387 0.92109 0.91553 0.91816 0.92059 0.91063 0.92037 0.86199 0.80897 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 10.46 55.49 0.58 -26.90 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.09 7.31 -52.49 -0.38 1.70 16 9 N -0.59 -15.42 3.35 -163.27 -0.55 -15.97 16 10 C 0.17 4.42 5.47 -1.69 -0.01 4.41 16 11 C -0.14 -2.91 5.11 -25.20 -0.13 -3.04 16 12 C 0.11 2.23 3.33 -66.85 -0.22 2.01 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.16 3.42 2.58 -68.35 -0.18 3.24 16 15 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 16 C -0.12 -2.06 5.45 -27.24 -0.15 -2.20 16 17 C -0.13 -1.73 5.92 -26.42 -0.16 -1.89 16 18 C 0.09 1.15 6.21 -3.45 -0.02 1.13 16 19 N -0.58 -9.63 2.91 -165.21 -0.48 -10.11 16 20 C 0.60 10.00 7.72 -12.39 -0.10 9.91 16 21 O -0.52 -10.10 13.64 5.31 0.07 -10.03 16 22 C 0.00 0.06 6.93 -82.76 -0.57 -0.52 16 23 C -0.13 -1.38 10.41 -39.36 -0.41 -1.79 16 24 C -0.08 -0.59 6.84 -82.21 -0.56 -1.15 16 25 C 0.35 1.86 5.83 36.01 0.21 2.07 16 26 F -0.20 -1.23 17.30 2.25 0.04 -1.19 16 27 F -0.18 -1.42 17.05 2.25 0.04 -1.38 16 28 N -0.37 -2.70 6.79 33.50 0.23 -2.47 16 29 H 0.45 1.71 8.96 -190.44 -1.71 0.00 16 30 N -0.24 -2.52 8.68 33.42 0.29 -2.23 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 33 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 34 H 0.09 1.98 6.02 -51.93 -0.31 1.67 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 37 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.12 1.43 4.11 -71.26 -0.29 1.14 16 42 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -34.07 348.77 -8.89 -42.97 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.81 Total: -0.66 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.54 Total: 5.44 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.07 Total: -57.69 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.07 -8.89 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049713163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.791 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds