Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00330 * 2 1 4 4 H 1.48496 * 109.47196 * 270.00647 * 3 2 1 5 5 H 1.48502 * 109.46795 * 30.00358 * 3 2 1 6 6 H 1.48497 * 109.47571 * 150.00123 * 3 2 1 7 7 C 1.38818 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99849 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.48389 * 126.56334 * 0.03911 * 9 7 2 11 11 C 1.55467 * 106.97756 * 174.44220 * 10 9 7 12 12 C 1.53434 * 101.67084 * 337.40335 * 11 10 9 13 13 H 1.08999 * 111.14295 * 282.01762 * 12 11 10 14 14 C 1.45028 * 126.56500 * 180.02562 * 9 7 2 15 15 H 1.08995 * 108.70575 * 96.53395 * 14 9 7 16 16 C 1.51080 * 119.18912 * 331.25251 * 14 9 7 17 17 C 1.53878 * 107.34263 * 176.11647 * 16 14 9 18 18 C 1.52710 * 111.52526 * 56.93018 * 17 16 14 19 19 N 1.45614 * 116.39356 * 152.70775 * 12 11 10 20 20 C 1.34783 * 122.15786 * 9.94611 * 19 12 11 21 21 O 1.21566 * 119.99983 * 354.24373 * 20 19 12 22 22 C 1.47708 * 119.99597 * 174.24052 * 20 19 12 23 23 C 1.41507 * 126.51692 * 184.54703 * 22 20 19 24 24 C 1.35360 * 105.50439 * 179.89820 * 23 22 20 25 25 C 1.50703 * 126.38777 * 180.15218 * 24 23 22 26 26 F 1.39895 * 109.47583 * 210.26836 * 25 24 23 27 27 F 1.39901 * 109.47329 * 330.27341 * 25 24 23 28 28 N 1.35036 * 107.22746 * 0.36147 * 24 23 22 29 29 H 0.97008 * 124.88336 * 179.75841 * 28 24 23 30 30 N 1.28460 * 110.23209 * 359.76218 * 28 24 23 31 31 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.95607 * 293.82426 * 10 9 7 33 33 H 1.09002 * 109.95847 * 55.05863 * 10 9 7 34 34 H 1.09002 * 110.98893 * 95.49337 * 11 10 9 35 35 H 1.08995 * 110.98778 * 219.30865 * 11 10 9 36 36 H 1.09001 * 109.88395 * 56.65993 * 16 14 9 37 37 H 1.09001 * 109.88444 * 295.57348 * 16 14 9 38 38 H 1.09003 * 109.06442 * 296.40595 * 17 16 14 39 39 H 1.09005 * 109.06901 * 177.46030 * 17 16 14 40 40 H 1.09007 * 109.16289 * 71.86585 * 18 17 16 41 41 H 1.08999 * 109.16640 * 191.10944 * 18 17 16 42 42 H 1.07999 * 127.24764 * 0.02562 * 23 22 20 43 43 H 1.09005 * 109.46885 * 90.26762 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1486 -2.5577 -0.0031 11 6 -0.4302 -4.0797 -0.1479 12 6 0.8719 -4.5767 -0.7894 13 1 0.8969 -4.3495 -1.8552 14 6 1.9024 -3.7187 -0.0017 15 1 1.9328 -4.0866 1.0238 16 6 3.2569 -3.9345 -0.6351 17 6 3.6456 -5.4043 -0.3971 18 6 2.5933 -6.3596 -0.9555 19 7 1.2352 -5.9622 -0.5269 20 6 0.3881 -6.8256 0.0677 21 8 -0.6785 -6.4318 0.4978 22 6 0.7558 -8.2504 0.1966 23 6 -0.0586 -9.2871 0.7107 24 6 0.6922 -10.4105 0.6308 25 6 0.2757 -11.7961 1.0523 26 9 1.4002 -12.5129 1.4750 27 9 -0.6431 -11.7073 2.1036 28 7 1.8858 -10.0574 0.1072 29 1 2.6214 -10.6677 -0.0584 30 7 1.9071 -8.7970 -0.1401 31 1 -0.4850 0.8400 0.0004 32 1 -0.5664 -2.1894 0.9339 33 1 -0.5844 -2.0170 -0.8432 34 1 -0.5866 -4.5423 0.8267 35 1 -1.2818 -4.2584 -0.8043 36 1 3.9921 -3.2769 -0.1713 37 1 3.2020 -3.7343 -1.7052 38 1 3.7498 -5.5760 0.6742 39 1 4.6009 -5.6032 -0.8830 40 1 2.6417 -6.3485 -2.0445 41 1 2.8005 -7.3685 -0.5987 42 1 -1.0677 -9.2005 1.0858 43 1 -0.1862 -12.3091 0.2086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049713163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = -28.062913 kcal Electronic energy + Delta-G solvation = -30241.683949 eV Core-core repulsion = 25767.043838 eV Total energy + Delta-G solvation = -4474.640111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08296 -48.12101 -43.93518 -41.56865 -39.17474 -36.97466 -34.36164 -34.00982 -33.06208 -32.98003 -30.78939 -29.69989 -27.30097 -26.82477 -26.28210 -24.34665 -22.87835 -22.64645 -22.26510 -21.38824 -20.28283 -19.54295 -18.66472 -18.58964 -18.09228 -17.73357 -17.22666 -16.94904 -16.73572 -16.14937 -16.12149 -15.79713 -15.40469 -15.29930 -14.98126 -14.90976 -14.79843 -14.44803 -14.29312 -14.23140 -13.97485 -13.83211 -13.41774 -13.19265 -12.97557 -12.70951 -12.66856 -12.45507 -12.32664 -12.05517 -11.82447 -11.74394 -11.67739 -11.46201 -11.14450 -10.79710 -10.67275 -10.52827 -10.44966 -9.58836 -8.90875 -7.83415 -5.20456 0.29395 0.70207 1.45806 1.48244 1.49365 1.57149 1.88714 2.21889 2.50556 2.60545 3.08384 3.14883 3.34679 3.35870 3.52258 3.77805 3.93245 3.95562 4.07073 4.09964 4.13180 4.23451 4.30083 4.33165 4.51942 4.58080 4.59878 4.67120 4.88367 4.94711 5.02400 5.07428 5.11043 5.17994 5.28034 5.42907 5.48463 5.59972 5.61253 5.73626 5.85173 6.18440 6.39131 6.62059 7.05972 7.08923 7.75766 8.46111 9.28493 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002590 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.273131 B =10809.906126 C =11482.594729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.233 4.233 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.119 4.119 12 C 0.130 3.870 13 H 0.086 0.914 14 C 0.154 3.846 15 H -0.005 1.005 16 C -0.111 4.111 17 C -0.117 4.117 18 C 0.085 3.915 19 N -0.586 5.586 20 C 0.594 3.406 21 O -0.559 6.559 22 C -0.023 4.023 23 C -0.147 4.147 24 C -0.053 4.053 25 C 0.355 3.645 26 F -0.202 7.202 27 F -0.198 7.198 28 N -0.339 5.339 29 H 0.468 0.532 30 N -0.233 5.233 31 H 0.246 0.754 32 H 0.000 1.000 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.171 0.829 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -29.486 -3.364 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.362 4.362 8 H 0.106 0.894 9 N -0.336 5.336 10 C 0.058 3.942 11 C -0.157 4.157 12 C 0.025 3.975 13 H 0.104 0.896 14 C 0.045 3.955 15 H 0.013 0.987 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.037 4.037 19 N -0.317 5.317 20 C 0.381 3.619 21 O -0.436 6.436 22 C -0.181 4.181 23 C -0.175 4.175 24 C -0.181 4.181 25 C 0.300 3.700 26 F -0.183 7.183 27 F -0.179 7.179 28 N -0.057 5.057 29 H 0.317 0.683 30 N -0.072 5.072 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.157 0.843 42 H 0.188 0.812 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.703 -28.811 -3.515 29.788 hybrid contribution -0.467 1.229 0.671 1.476 sum 6.236 -27.581 -2.845 28.420 Atomic orbital electron populations 1.70180 1.06496 1.25297 1.58386 1.25708 0.96570 1.01183 1.02777 0.85048 0.77575 0.78965 0.77564 1.20969 1.22437 1.19245 1.19412 0.91013 0.83126 1.42632 0.89373 1.44349 1.02112 1.00809 1.86361 1.21441 0.83817 0.91106 0.97786 1.22815 0.96194 0.94983 1.01751 1.22066 0.96519 0.80083 0.98821 0.89625 1.20921 0.94326 0.85026 0.95200 0.98724 1.21418 0.95516 0.97289 1.00721 1.21859 0.99567 0.92411 1.01689 1.22688 0.78563 1.01824 1.00582 1.47838 1.15956 1.09590 1.58326 1.17320 0.83397 0.83644 0.77542 1.90776 1.25294 1.77655 1.49891 1.21750 0.93150 0.94642 1.08588 1.21657 1.02594 0.89434 1.03804 1.22073 0.89628 0.98184 1.08198 1.20178 0.76769 0.84836 0.88212 1.93029 1.54104 1.79124 1.92027 1.93052 1.66654 1.96630 1.61572 1.43386 1.13167 1.06017 1.43166 0.68252 1.73260 1.21271 0.92919 1.19702 0.94436 0.98205 0.95375 0.90518 0.91345 0.92441 0.91462 0.92597 0.87121 0.90167 0.84274 0.81172 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 10.46 21.65 0.23 -59.51 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 3 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.23 -13.32 9.94 84.04 0.84 -12.49 16 8 H 0.09 4.73 7.31 -2.91 -0.02 4.71 16 9 N -0.61 -33.11 3.35 -670.45 -2.25 -35.36 16 10 C 0.18 10.03 5.47 86.86 0.47 10.50 16 11 C -0.12 -5.39 5.11 31.59 0.16 -5.23 16 12 C 0.13 5.15 3.33 46.17 0.15 5.30 16 13 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 14 C 0.15 6.70 2.58 45.51 0.12 6.82 16 15 H 0.00 -0.22 8.04 -2.39 -0.02 -0.24 16 16 C -0.11 -3.80 5.45 30.26 0.16 -3.63 16 17 C -0.12 -2.87 5.92 30.79 0.18 -2.69 16 18 C 0.08 2.03 6.21 86.02 0.53 2.56 16 19 N -0.59 -19.00 2.91 -794.87 -2.31 -21.31 16 20 C 0.59 19.86 7.72 86.75 0.67 20.53 16 21 O -0.56 -22.53 13.64 -3.92 -0.05 -22.59 16 22 C -0.02 -0.58 6.93 42.46 0.29 -0.29 16 23 C -0.15 -2.95 10.41 22.41 0.23 -2.72 16 24 C -0.05 -0.66 6.84 41.40 0.28 -0.37 16 25 C 0.35 2.40 5.83 71.24 0.42 2.82 16 26 F -0.20 -1.72 17.30 44.97 0.78 -0.94 16 27 F -0.20 -2.59 17.05 44.97 0.77 -1.82 16 28 N -0.34 -3.74 6.79 -47.93 -0.33 -4.07 16 29 H 0.47 1.43 8.96 -219.99 -1.97 -0.54 16 30 N -0.23 -4.30 8.68 -48.17 -0.42 -4.72 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.00 -0.02 7.81 -2.39 -0.02 -0.04 16 33 H 0.03 1.66 7.19 -2.39 -0.02 1.65 16 34 H 0.08 3.68 6.02 -2.39 -0.01 3.66 16 35 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.06 2.05 7.70 -2.39 -0.02 2.04 16 37 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.14 2.85 4.11 -27.39 -0.11 2.74 16 42 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.19 -0.44 8.14 -2.38 -0.02 -0.46 16 Total: -1.00 -79.25 348.77 2.43 -76.82 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -1.00 Total: 7.20 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 4.99 Total: 17.50 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.07 Total: -124.97 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 1.54 Total: -2.76 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.25 2.43 -76.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049713163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.761 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds