Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48494 * 109.47262 * 270.00624 * 3 2 1 5 5 H 1.48505 * 109.47063 * 30.00660 * 3 2 1 6 6 H 1.48500 * 109.47025 * 150.00428 * 3 2 1 7 7 C 1.38809 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99915 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.48378 * 126.56464 * 359.96331 * 9 7 2 11 11 C 1.55467 * 106.98045 * 185.55923 * 10 9 7 12 12 C 1.53436 * 101.67114 * 22.59342 * 11 10 9 13 13 H 1.09006 * 111.14204 * 77.98448 * 12 11 10 14 14 C 1.45027 * 126.56179 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.70552 * 263.46212 * 14 9 7 16 16 C 1.51080 * 119.19208 * 28.74123 * 14 9 7 17 17 C 1.53875 * 107.34237 * 183.88275 * 16 14 9 18 18 C 1.52713 * 111.52855 * 303.07459 * 17 16 14 19 19 N 1.45706 * 116.36958 * 207.32777 * 12 11 10 20 20 C 1.34779 * 122.22018 * 350.13399 * 19 12 11 21 21 O 1.21605 * 119.99559 * 355.75293 * 20 19 12 22 22 C 1.47429 * 119.99713 * 175.74857 * 20 19 12 23 23 C 1.41289 * 126.41650 * 40.73102 * 22 20 19 24 24 N 1.30441 * 108.02606 * 179.97438 * 23 22 20 25 25 N 1.39945 * 108.89387 * 359.97438 * 24 23 22 26 26 C 1.46500 * 125.74959 * 179.97438 * 25 24 23 27 27 F 1.39900 * 109.46801 * 120.02678 * 26 25 24 28 28 F 1.39902 * 109.46773 * 240.01704 * 26 25 24 29 29 C 1.34256 * 108.49140 * 359.74780 * 25 24 23 30 30 H 0.96998 * 120.00470 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.95875 * 304.93531 * 10 9 7 32 32 H 1.09000 * 109.96165 * 66.17000 * 10 9 7 33 33 H 1.09002 * 110.99292 * 140.69073 * 11 10 9 34 34 H 1.08998 * 110.98448 * 264.50566 * 11 10 9 35 35 H 1.08998 * 109.88147 * 64.43444 * 16 14 9 36 36 H 1.08997 * 109.88956 * 303.34205 * 16 14 9 37 37 H 1.08995 * 109.07104 * 182.54137 * 17 16 14 38 38 H 1.09006 * 109.06635 * 63.60230 * 17 16 14 39 39 H 1.09000 * 109.16399 * 168.94140 * 18 17 16 40 40 H 1.09005 * 109.16024 * 288.18639 * 18 17 16 41 41 H 1.08005 * 125.98650 * 359.96655 * 23 22 20 42 42 H 1.08997 * 109.47443 * 0.02562 * 26 25 24 43 43 H 1.07997 * 126.29017 * 180.24670 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 0.0008 11 6 -0.4300 -4.0799 0.1442 12 6 0.8721 -4.5774 0.7853 13 1 0.8971 -4.3511 1.8513 14 6 1.9026 -3.7186 -0.0016 15 1 1.9330 -4.0856 -1.0275 16 6 3.2572 -3.9349 0.6315 17 6 3.6459 -5.4044 0.3922 18 6 2.5936 -6.3604 0.9497 19 7 1.2355 -5.9634 0.5205 20 6 0.3900 -6.8264 -0.0769 21 8 -0.7444 -6.4794 -0.3443 22 6 0.8406 -8.1910 -0.4061 23 6 1.6441 -9.0268 0.4014 24 7 1.8238 -10.1512 -0.2348 25 7 1.1533 -10.0898 -1.4617 26 6 1.1118 -11.1532 -2.4685 27 9 -0.2154 -11.5395 -2.6843 28 9 1.6611 -10.6830 -3.6662 29 6 0.5505 -8.8941 -1.5581 30 1 -0.4851 0.8400 0.0004 31 1 -0.5843 -2.0178 0.8414 32 1 -0.5663 -2.1885 -0.9358 33 1 -1.2817 -4.2593 0.8005 34 1 -0.5863 -4.5415 -0.8307 35 1 3.2023 -3.7358 1.7017 36 1 3.9923 -3.2769 0.1682 37 1 4.6011 -5.6037 0.8778 38 1 3.7501 -5.5752 -0.6794 39 1 2.8014 -7.3691 0.5926 40 1 2.6415 -6.3495 2.0387 41 1 2.0401 -8.7781 1.3750 42 1 1.6868 -12.0096 -2.1165 43 1 -0.0487 -8.5453 -2.3862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049813590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = 1.929246 kcal Electronic energy + Delta-G solvation = -30353.277108 eV Core-core repulsion = 25879.937554 eV Total energy + Delta-G solvation = -4473.339554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.83791 -47.93516 -41.78122 -40.01661 -37.59568 -35.46325 -33.28892 -32.59817 -32.09086 -30.77567 -28.92092 -28.28228 -26.74399 -24.84370 -24.42520 -22.46337 -22.15992 -21.37587 -20.64763 -19.82012 -19.36303 -18.38615 -18.31012 -17.88839 -16.66134 -16.12344 -15.80905 -15.52856 -15.34572 -14.85421 -14.67121 -14.52066 -14.28583 -14.25238 -14.12564 -13.87786 -13.68218 -13.48869 -13.11027 -12.79538 -12.70296 -12.42783 -12.23780 -11.84366 -11.55615 -11.55076 -11.11201 -10.84116 -10.72210 -10.52709 -10.43503 -10.24080 -10.07397 -9.97773 -9.82888 -9.59922 -9.31351 -9.00689 -8.57426 -8.20740 -6.80849 -5.68105 -3.02380 1.07049 1.25498 1.89115 2.94492 3.03096 3.32361 3.41570 3.46223 3.48377 3.59407 4.08363 4.23852 4.35141 4.51260 4.67058 4.83284 4.96167 5.08932 5.20769 5.33375 5.38744 5.45564 5.61901 5.65640 5.78835 5.86960 5.88607 6.01995 6.05779 6.12272 6.27950 6.31559 6.41245 6.57676 6.73663 6.81028 6.91436 6.95255 7.19382 7.60223 7.66049 7.72447 7.86343 8.27081 8.42363 9.21386 9.85293 10.53540 11.43890 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.002710 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.626802 B =10328.663177 C =10626.204314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.117 3.883 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.102 3.898 19 N -0.591 5.591 20 C 0.592 3.408 21 O -0.530 6.530 22 C -0.262 4.262 23 C 0.097 3.903 24 N -0.280 5.280 25 N -0.428 5.428 26 C 0.504 3.496 27 F -0.179 7.179 28 F -0.178 7.178 29 C 0.131 3.869 30 H 0.252 0.748 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.203 0.797 42 H 0.169 0.831 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -23.705 -0.585 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.166 4.166 12 C 0.013 3.987 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.323 5.323 20 C 0.379 3.621 21 O -0.407 6.407 22 C -0.276 4.276 23 C -0.093 4.093 24 N -0.098 5.098 25 N -0.218 5.218 26 C 0.369 3.631 27 F -0.160 7.160 28 F -0.160 7.160 29 C -0.014 4.014 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.219 0.781 42 H 0.185 0.815 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.353 -24.549 -0.879 25.142 hybrid contribution 0.063 1.764 -0.204 1.777 sum 5.416 -22.785 -1.084 23.445 Atomic orbital electron populations 1.69946 1.04871 1.25045 1.56810 1.24802 0.95665 0.97606 1.02297 0.86154 0.78565 0.83702 0.77531 1.21680 1.21713 1.20728 1.18983 0.90323 0.82219 1.43903 0.90369 1.44084 1.01809 0.99318 1.86501 1.21749 0.83609 0.88788 1.01110 1.22931 0.94704 0.97812 1.01190 1.22427 0.98773 0.78159 0.99385 0.90031 1.20762 0.91432 0.87168 0.95682 0.96596 1.21425 0.98501 0.94166 1.01292 1.21892 0.97635 0.95702 1.01547 1.21992 0.81755 0.98920 0.99404 1.47812 1.14131 1.11274 1.59083 1.17125 0.84548 0.82755 0.77688 1.90816 1.18602 1.77336 1.53919 1.20532 1.10732 0.98523 0.97842 1.24359 0.95146 0.89820 0.99932 1.77189 1.18362 1.22570 0.91676 1.49565 1.42452 1.13300 1.16496 1.20965 0.79184 0.87774 0.75138 1.93156 1.37944 1.90274 1.94635 1.93159 1.85149 1.90164 1.47512 1.23026 0.94330 0.84647 0.99402 0.93730 0.92513 0.94289 0.91899 0.90407 0.91710 0.91496 0.90928 0.91913 0.89825 0.91297 0.78053 0.81477 0.79251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.46 55.49 0.58 -26.58 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.19 9.94 -15.06 -0.15 -6.34 16 8 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 9 N -0.59 -15.05 3.35 -163.27 -0.55 -15.60 16 10 C 0.17 4.31 5.47 -1.70 -0.01 4.30 16 11 C -0.13 -2.69 4.95 -25.19 -0.12 -2.81 16 12 C 0.12 2.17 3.33 -66.79 -0.22 1.95 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.26 2.58 -68.35 -0.18 3.08 16 15 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 16 C -0.12 -1.92 5.45 -27.24 -0.15 -2.07 16 17 C -0.13 -1.58 5.92 -26.42 -0.16 -1.73 16 18 C 0.10 1.14 5.69 -3.44 -0.02 1.12 16 19 N -0.59 -8.92 2.91 -165.23 -0.48 -9.40 16 20 C 0.59 9.26 7.54 -12.52 -0.09 9.17 16 21 O -0.53 -10.14 14.03 5.27 0.07 -10.06 16 22 C -0.26 -3.20 5.46 -105.07 -0.57 -3.78 16 23 C 0.10 0.94 9.65 -16.98 -0.16 0.77 16 24 N -0.28 -2.78 12.50 30.86 0.39 -2.39 16 25 N -0.43 -4.07 3.84 -66.10 -0.25 -4.33 16 26 C 0.50 3.29 6.37 59.85 0.38 3.68 16 27 F -0.18 -1.39 17.47 2.25 0.04 -1.35 16 28 F -0.18 -1.38 17.47 2.25 0.04 -1.34 16 29 C 0.13 1.45 11.37 -16.56 -0.19 1.26 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 32 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.71 6.34 -51.93 -0.33 1.38 16 35 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 36 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.76 4.18 -51.93 -0.22 0.54 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.20 1.35 6.91 -52.48 -0.36 0.99 16 42 H 0.17 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -33.92 350.92 -7.04 -40.96 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.40 Total: -0.49 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.74 Total: 8.29 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.32 Total: -58.30 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.08 Total: -2.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.92 -7.04 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049813590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.890 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds