Wall clock time and date at job start Sat Apr 11 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48494 * 109.47262 * 270.00624 * 3 2 1 5 5 H 1.48505 * 109.47063 * 30.00660 * 3 2 1 6 6 H 1.48500 * 109.47025 * 150.00428 * 3 2 1 7 7 C 1.38809 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99915 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.48378 * 126.56464 * 359.96331 * 9 7 2 11 11 C 1.55467 * 106.98045 * 185.55923 * 10 9 7 12 12 C 1.53436 * 101.67114 * 22.59342 * 11 10 9 13 13 H 1.09006 * 111.14204 * 77.98448 * 12 11 10 14 14 C 1.45027 * 126.56179 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.70552 * 263.46212 * 14 9 7 16 16 C 1.51080 * 119.19208 * 28.74123 * 14 9 7 17 17 C 1.53875 * 107.34237 * 183.88275 * 16 14 9 18 18 C 1.52713 * 111.52855 * 303.07459 * 17 16 14 19 19 N 1.45706 * 116.36958 * 207.32777 * 12 11 10 20 20 C 1.34779 * 122.22018 * 350.13399 * 19 12 11 21 21 O 1.21605 * 119.99559 * 355.75293 * 20 19 12 22 22 C 1.47429 * 119.99713 * 175.74857 * 20 19 12 23 23 C 1.41289 * 126.41650 * 40.73102 * 22 20 19 24 24 N 1.30441 * 108.02606 * 179.97438 * 23 22 20 25 25 N 1.39945 * 108.89387 * 359.97438 * 24 23 22 26 26 C 1.46500 * 125.74959 * 179.97438 * 25 24 23 27 27 F 1.39900 * 109.46801 * 120.02678 * 26 25 24 28 28 F 1.39902 * 109.46773 * 240.01704 * 26 25 24 29 29 C 1.34256 * 108.49140 * 359.74780 * 25 24 23 30 30 H 0.96998 * 120.00470 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.95875 * 304.93531 * 10 9 7 32 32 H 1.09000 * 109.96165 * 66.17000 * 10 9 7 33 33 H 1.09002 * 110.99292 * 140.69073 * 11 10 9 34 34 H 1.08998 * 110.98448 * 264.50566 * 11 10 9 35 35 H 1.08998 * 109.88147 * 64.43444 * 16 14 9 36 36 H 1.08997 * 109.88956 * 303.34205 * 16 14 9 37 37 H 1.08995 * 109.07104 * 182.54137 * 17 16 14 38 38 H 1.09006 * 109.06635 * 63.60230 * 17 16 14 39 39 H 1.09000 * 109.16399 * 168.94140 * 18 17 16 40 40 H 1.09005 * 109.16024 * 288.18639 * 18 17 16 41 41 H 1.08005 * 125.98650 * 359.96655 * 23 22 20 42 42 H 1.08997 * 109.47443 * 0.02562 * 26 25 24 43 43 H 1.07997 * 126.29017 * 180.24670 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 0.0008 11 6 -0.4300 -4.0799 0.1442 12 6 0.8721 -4.5774 0.7853 13 1 0.8971 -4.3511 1.8513 14 6 1.9026 -3.7186 -0.0016 15 1 1.9330 -4.0856 -1.0275 16 6 3.2572 -3.9349 0.6315 17 6 3.6459 -5.4044 0.3922 18 6 2.5936 -6.3604 0.9497 19 7 1.2355 -5.9634 0.5205 20 6 0.3900 -6.8264 -0.0769 21 8 -0.7444 -6.4794 -0.3443 22 6 0.8406 -8.1910 -0.4061 23 6 1.6441 -9.0268 0.4014 24 7 1.8238 -10.1512 -0.2348 25 7 1.1533 -10.0898 -1.4617 26 6 1.1118 -11.1532 -2.4685 27 9 -0.2154 -11.5395 -2.6843 28 9 1.6611 -10.6830 -3.6662 29 6 0.5505 -8.8941 -1.5581 30 1 -0.4851 0.8400 0.0004 31 1 -0.5843 -2.0178 0.8414 32 1 -0.5663 -2.1885 -0.9358 33 1 -1.2817 -4.2593 0.8005 34 1 -0.5863 -4.5415 -0.8307 35 1 3.2023 -3.7358 1.7017 36 1 3.9923 -3.2769 0.1682 37 1 4.6011 -5.6037 0.8778 38 1 3.7501 -5.5752 -0.6794 39 1 2.8014 -7.3691 0.5926 40 1 2.6415 -6.3495 2.0387 41 1 2.0401 -8.7781 1.3750 42 1 1.6868 -12.0096 -2.1165 43 1 -0.0487 -8.5453 -2.3862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049813590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:05 Heat of formation + Delta-G solvation = -20.711742 kcal Electronic energy + Delta-G solvation = -30354.258895 eV Core-core repulsion = 25879.937554 eV Total energy + Delta-G solvation = -4474.321341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.39171 -48.49794 -42.62558 -41.33773 -39.05184 -36.94079 -34.41884 -34.03573 -33.56094 -31.76413 -30.66260 -29.72230 -27.56955 -26.34940 -26.05191 -23.55282 -23.06790 -22.65356 -21.99861 -21.39147 -20.48853 -19.30683 -18.87766 -18.64164 -18.35318 -17.26028 -17.03964 -16.84474 -16.39468 -16.34313 -15.84545 -15.62499 -15.32654 -15.29740 -15.17019 -14.88510 -14.81893 -14.60416 -14.28227 -14.07448 -13.91636 -13.87549 -13.37279 -13.22089 -13.12858 -12.84506 -12.71803 -12.49230 -12.11475 -12.06625 -11.95645 -11.75114 -11.67679 -11.57012 -11.41522 -11.00317 -10.75981 -10.53639 -10.03739 -9.51330 -8.89562 -7.82680 -5.19577 0.24059 0.61607 1.04062 1.46790 1.49082 1.57661 1.83830 2.19709 2.50475 2.52497 3.07830 3.35939 3.38382 3.50679 3.55283 3.62155 3.78755 3.95262 4.02599 4.08069 4.12212 4.16891 4.29460 4.37371 4.47710 4.59096 4.61696 4.70156 4.82503 4.95000 5.05418 5.12374 5.18023 5.18925 5.27203 5.31575 5.46465 5.50716 5.61100 5.64705 5.74565 6.19359 6.19734 6.52435 7.06856 7.20797 7.77168 8.47193 9.29131 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.002710 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.626802 B =10328.663177 C =10626.204314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.111 4.111 12 C 0.134 3.866 13 H 0.087 0.913 14 C 0.153 3.847 15 H -0.004 1.004 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.097 3.903 19 N -0.590 5.590 20 C 0.590 3.410 21 O -0.576 6.576 22 C -0.280 4.280 23 C 0.106 3.894 24 N -0.279 5.279 25 N -0.427 5.427 26 C 0.501 3.499 27 F -0.187 7.187 28 F -0.186 7.186 29 C 0.128 3.872 30 H 0.246 0.754 31 H 0.027 0.973 32 H -0.002 1.002 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.235 0.765 42 H 0.212 0.788 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 -26.466 0.583 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.057 3.943 11 C -0.150 4.150 12 C 0.028 3.972 13 H 0.105 0.895 14 C 0.044 3.956 15 H 0.013 0.987 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.023 4.023 19 N -0.322 5.322 20 C 0.379 3.621 21 O -0.456 6.456 22 C -0.295 4.295 23 C -0.083 4.083 24 N -0.097 5.097 25 N -0.216 5.216 26 C 0.368 3.632 27 F -0.168 7.168 28 F -0.167 7.167 29 C -0.019 4.019 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.251 0.749 42 H 0.228 0.772 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.377 -27.385 0.286 28.639 hybrid contribution -0.878 2.554 -0.656 2.779 sum 7.499 -24.831 -0.370 25.941 Atomic orbital electron populations 1.70180 1.06514 1.25243 1.58488 1.25694 0.96528 1.01174 1.02865 0.85072 0.77844 0.79103 0.77288 1.21717 1.22323 1.18719 1.19417 0.91038 0.83129 1.42449 0.89262 1.44346 1.02030 1.00930 1.86344 1.21443 0.83949 0.91205 0.97681 1.22655 0.96560 0.94722 1.01050 1.22009 0.95968 0.80352 0.98842 0.89542 1.20948 0.94454 0.84882 0.95272 0.98672 1.21407 0.95305 0.97413 1.00807 1.21875 0.99740 0.92379 1.01830 1.22361 0.78840 0.99884 1.01250 1.47860 1.15870 1.09454 1.58987 1.17593 0.83926 0.83940 0.76623 1.90789 1.20686 1.78526 1.55623 1.20237 1.12758 0.97152 0.99304 1.24779 0.94096 0.88794 1.00627 1.77178 1.18280 1.22544 0.91664 1.49852 1.41685 1.13191 1.16896 1.21666 0.79166 0.87932 0.74404 1.93142 1.38871 1.90193 1.94633 1.93145 1.85186 1.90342 1.48075 1.23168 0.94072 0.85346 0.99345 0.94506 0.95472 0.98408 0.91588 0.91558 0.91296 0.92691 0.86907 0.92588 0.86911 0.88330 0.74909 0.77187 0.79058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.20 10.46 21.65 0.23 -58.97 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 3 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.23 -12.95 9.94 84.03 0.84 -12.12 16 8 H 0.09 4.67 7.31 -2.91 -0.02 4.65 16 9 N -0.61 -32.19 3.35 -670.47 -2.25 -34.43 16 10 C 0.18 9.77 5.47 86.87 0.47 10.24 16 11 C -0.11 -4.90 4.95 31.59 0.16 -4.75 16 12 C 0.13 4.94 3.33 46.16 0.15 5.09 16 13 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 14 C 0.15 6.29 2.58 45.51 0.12 6.41 16 15 H 0.00 -0.19 8.04 -2.39 -0.02 -0.21 16 16 C -0.11 -3.48 5.45 30.26 0.16 -3.32 16 17 C -0.12 -2.47 5.92 30.79 0.18 -2.29 16 18 C 0.10 1.76 5.69 86.02 0.49 2.25 16 19 N -0.59 -16.80 2.91 -794.93 -2.31 -19.11 16 20 C 0.59 17.92 7.54 86.66 0.65 18.58 16 21 O -0.58 -22.47 14.03 -4.05 -0.06 -22.52 16 22 C -0.28 -6.26 5.46 -20.15 -0.11 -6.37 16 23 C 0.11 1.65 9.65 85.65 0.83 2.47 16 24 N -0.28 -4.48 12.50 -56.28 -0.70 -5.18 16 25 N -0.43 -6.98 3.84 -363.03 -1.40 -8.37 16 26 C 0.50 5.22 6.37 127.77 0.81 6.03 16 27 F -0.19 -2.56 17.47 44.97 0.79 -1.77 16 28 F -0.19 -2.51 17.47 44.97 0.79 -1.72 16 29 C 0.13 2.62 11.37 84.28 0.96 3.58 16 30 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.03 1.59 7.19 -2.38 -0.02 1.57 16 32 H 0.00 -0.14 7.81 -2.39 -0.02 -0.16 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.07 3.08 6.34 -2.39 -0.02 3.06 16 35 H 0.07 2.11 8.12 -2.39 -0.02 2.10 16 36 H 0.05 1.85 7.70 -2.39 -0.02 1.83 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.11 1.45 4.18 -2.39 -0.01 1.44 16 40 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.23 1.85 6.91 -2.91 -0.02 1.83 16 42 H 0.21 0.36 8.14 -2.39 -0.02 0.35 16 43 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -78.91 350.92 4.34 -74.56 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.05 Total: 7.13 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 6.18 Total: 22.24 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -6.43 Total: -126.07 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.57 Total: -3.49 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.91 4.34 -74.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049813590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.850 kcal (2) G-P(sol) polarization free energy of solvation -78.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds