Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47213 * 274.97175 * 3 2 1 5 5 H 1.48501 * 109.47132 * 34.96799 * 3 2 1 6 6 H 1.48502 * 109.47086 * 154.96836 * 3 2 1 7 7 C 1.38810 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99850 * 166.95615 * 7 2 1 9 9 N 1.36937 * 119.99929 * 346.95401 * 7 2 1 10 10 C 1.47101 * 125.64538 * 169.35457 * 9 7 2 11 11 C 1.55027 * 107.12400 * 180.18068 * 10 9 7 12 12 H 1.09002 * 112.15569 * 216.41123 * 11 10 9 13 13 C 1.52956 * 107.60263 * 92.90307 * 11 10 9 14 14 C 1.52726 * 110.88219 * 194.02774 * 13 11 10 15 15 C 1.53434 * 107.91280 * 64.54307 * 14 13 11 16 16 N 1.46798 * 107.31929 * 300.85830 * 15 14 13 17 17 C 1.34774 * 119.52118 * 232.83297 * 16 15 14 18 18 O 1.21574 * 120.00027 * 357.08785 * 17 16 15 19 19 C 1.47707 * 120.00294 * 177.35503 * 17 16 15 20 20 C 1.41498 * 126.52086 * 187.35964 * 19 17 16 21 21 C 1.35361 * 105.50512 * 179.88318 * 20 19 17 22 22 C 1.50702 * 126.39156 * 180.15123 * 21 20 19 23 23 F 1.39900 * 109.46649 * 300.29961 * 22 21 20 24 24 F 1.39899 * 109.46879 * 60.29173 * 22 21 20 25 25 N 1.35038 * 107.23001 * 0.37885 * 21 20 19 26 26 H 0.96992 * 124.89179 * 179.72436 * 25 21 20 27 27 N 1.28476 * 110.22831 * 359.75201 * 25 21 20 28 28 C 1.45019 * 120.95534 * 52.55513 * 16 15 14 29 29 H 1.09007 * 109.86346 * 192.81400 * 28 16 15 30 30 C 1.47679 * 125.64567 * 349.37836 * 9 7 2 31 31 H 0.97000 * 119.99957 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.90446 * 60.80696 * 10 9 7 33 33 H 1.08995 * 110.06028 * 299.64085 * 10 9 7 34 34 H 1.09001 * 109.19719 * 314.39135 * 13 11 10 35 35 H 1.09007 * 109.19701 * 73.71555 * 13 11 10 36 36 H 1.09006 * 109.67914 * 183.56536 * 14 13 11 37 37 H 1.08997 * 109.68287 * 304.07527 * 14 13 11 38 38 H 1.08997 * 109.26510 * 181.79823 * 15 14 13 39 39 H 1.09000 * 110.64299 * 60.68364 * 15 14 13 40 40 H 1.07996 * 127.24962 * 359.97438 * 20 19 17 41 41 H 1.09000 * 109.47484 * 180.29819 * 22 21 20 42 42 H 1.08998 * 110.44723 * 84.73022 * 30 9 7 43 43 H 1.08997 * 110.45294 * 322.17985 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3926 2.1071 -1.3948 5 1 1.5041 2.6201 0.8024 6 1 3.5963 1.4122 0.5924 7 6 2.0103 -1.2021 0.0005 8 1 3.0694 -1.2142 -0.2106 9 7 1.3521 -2.3726 0.2688 10 6 1.9012 -3.7254 0.0892 11 6 0.7971 -4.7265 0.5159 12 1 1.2080 -5.6023 1.0183 13 6 0.0069 -5.1057 -0.7377 14 6 -1.2986 -5.8063 -0.3671 15 6 -2.1750 -4.8008 0.3913 16 7 -1.4238 -4.3746 1.5784 17 6 -1.9993 -4.4594 2.7941 18 8 -3.1506 -4.8362 2.8968 19 6 -1.2332 -4.0887 4.0014 20 6 -1.6435 -4.2601 5.3447 21 6 -0.6253 -3.7821 6.0978 22 6 -0.5697 -3.7406 7.6032 23 9 -1.6335 -2.9723 8.0881 24 9 -0.6652 -5.0413 8.1094 25 7 0.3292 -3.3447 5.2487 26 1 1.1719 -2.9473 5.5183 27 7 -0.0397 -3.5301 4.0320 28 6 -0.0695 -3.8694 1.4624 29 1 0.3938 -3.8219 2.4480 30 6 -0.0266 -2.4857 0.7857 31 1 -0.4850 0.8400 -0.0004 32 1 2.7824 -3.8547 0.7177 33 1 2.1643 -3.8864 -0.9562 34 1 -0.2193 -4.2031 -1.3054 35 1 0.6096 -5.7742 -1.3526 36 1 -1.8149 -6.1236 -1.2732 37 1 -1.0853 -6.6742 0.2568 38 1 -3.1013 -5.2884 0.6948 39 1 -2.3985 -3.9370 -0.2348 40 1 -2.5726 -4.6844 5.6953 41 1 0.3737 -3.2958 7.9198 42 1 -0.7451 -2.4397 -0.0327 43 1 -0.2262 -1.6994 1.5136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050136364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = -12.409351 kcal Electronic energy + Delta-G solvation = -30897.379328 eV Core-core repulsion = 26423.418006 eV Total energy + Delta-G solvation = -4473.961322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.36666 -47.37204 -42.93346 -40.06028 -37.96565 -35.00109 -33.30627 -32.37274 -31.92010 -31.64575 -29.31769 -27.35591 -26.59820 -25.75697 -24.51496 -23.09751 -21.92473 -21.50637 -20.41911 -19.88597 -19.22898 -17.82639 -17.67115 -17.52687 -17.20868 -16.86260 -15.81782 -15.63937 -15.27998 -14.80131 -14.54927 -14.42765 -14.21114 -13.96574 -13.83400 -13.74791 -13.72230 -13.28357 -13.13756 -12.92078 -12.43291 -12.20127 -11.96524 -11.74170 -11.70836 -11.18324 -11.09725 -10.90101 -10.78275 -10.54915 -10.33703 -10.20149 -9.93837 -9.89663 -9.75293 -9.70302 -9.49741 -9.24284 -8.57685 -8.13403 -6.80948 -5.77412 -3.09161 1.38153 1.76311 2.35273 3.12440 3.36196 3.42412 3.44374 3.49289 3.49818 3.68255 4.08825 4.33459 4.47786 4.57278 4.89500 5.07152 5.20098 5.24972 5.28654 5.38575 5.45586 5.49114 5.61049 5.73114 5.84595 5.89047 6.01155 6.07295 6.20881 6.25452 6.25845 6.29560 6.44923 6.63931 6.65364 6.76405 6.87299 7.05112 7.39820 7.52180 7.58484 7.75114 7.89213 8.21663 8.39724 9.15345 9.78701 10.46502 11.35572 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.004325 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.692455 B = 6472.557839 C = 8305.021626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.141 3.859 11 C -0.106 4.106 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.130 4.130 15 C 0.110 3.890 16 N -0.571 5.571 17 C 0.598 3.402 18 O -0.544 6.544 19 C -0.006 4.006 20 C -0.122 4.122 21 C -0.082 4.082 22 C 0.354 3.646 23 F -0.187 7.187 24 F -0.188 7.188 25 N -0.362 5.362 26 H 0.449 0.551 27 N -0.209 5.209 28 C 0.078 3.922 29 H 0.140 0.860 30 C 0.181 3.819 31 H 0.253 0.747 32 H 0.022 0.978 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.030 0.970 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -10.783 11.557 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.014 3.986 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.168 4.168 15 C -0.012 4.012 16 N -0.301 5.301 17 C 0.384 3.616 18 O -0.420 6.420 19 C -0.165 4.165 20 C -0.150 4.150 21 C -0.208 4.208 22 C 0.298 3.702 23 F -0.168 7.168 24 F -0.169 7.169 25 N -0.077 5.077 26 H 0.294 0.706 27 N -0.045 5.045 28 C -0.027 4.027 29 H 0.156 0.844 30 C 0.055 3.945 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.187 0.813 41 H 0.140 0.860 42 H 0.048 0.952 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.442 -10.395 10.895 15.065 hybrid contribution 0.322 0.949 0.489 1.115 sum 0.764 -9.446 11.383 14.812 Atomic orbital electron populations 1.69978 1.04978 1.25224 1.55739 1.24794 0.95477 0.97760 1.02090 0.86209 0.78800 0.83821 0.77561 1.21616 1.21695 1.20636 1.18970 0.91833 0.83044 1.42045 0.90619 1.44380 1.12523 0.99812 1.75725 1.21500 0.93878 0.85644 0.97543 1.22400 0.96782 0.97492 0.95948 0.90815 1.21525 0.95394 1.00781 0.97323 1.21871 0.96878 0.97962 1.00055 1.21767 0.95180 0.98103 0.86117 1.47336 1.15763 1.61417 1.05563 1.16930 0.85284 0.77815 0.81577 1.90754 1.16409 1.48914 1.85962 1.22081 0.93203 1.06064 0.95126 1.21565 0.99916 1.02823 0.90722 1.21697 0.94432 1.10775 0.93864 1.19272 0.90089 0.75937 0.84885 1.93074 1.60157 1.74957 1.88585 1.93063 1.97035 1.38934 1.87886 1.43540 1.17178 1.44279 1.02753 0.70590 1.73719 1.14182 1.15873 1.00739 1.23150 0.79956 0.96291 1.03322 0.84407 1.21340 0.86688 0.90514 0.95920 0.93718 0.96045 0.95557 0.90733 0.92416 0.91024 0.91773 0.89192 0.90475 0.81335 0.85973 0.95230 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.56 10.87 55.49 0.60 -25.95 16 2 C 0.00 -0.11 5.36 -17.43 -0.09 -0.20 16 3 Si 0.91 21.64 29.57 -169.99 -5.03 16.61 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.25 10.22 -15.06 -0.15 -6.41 16 8 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 9 N -0.60 -14.73 3.40 -169.88 -0.58 -15.31 16 10 C 0.14 2.83 6.63 -2.64 -0.02 2.81 16 11 C -0.11 -1.82 3.56 -88.88 -0.32 -2.14 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.76 4.67 -26.89 -0.13 -1.88 16 14 C -0.13 -1.78 6.12 -26.65 -0.16 -1.94 16 15 C 0.11 1.76 6.16 -3.65 -0.02 1.74 16 16 N -0.57 -10.19 2.73 -166.40 -0.45 -10.65 16 17 C 0.60 10.94 7.66 -12.39 -0.09 10.84 16 18 O -0.54 -10.75 16.26 5.30 0.09 -10.67 16 19 C -0.01 -0.09 6.85 -82.77 -0.57 -0.66 16 20 C -0.12 -1.67 10.74 -39.37 -0.42 -2.09 16 21 C -0.08 -0.89 6.66 -82.21 -0.55 -1.43 16 22 C 0.35 2.80 5.79 36.01 0.21 3.01 16 23 F -0.19 -1.87 17.32 2.25 0.04 -1.83 16 24 F -0.19 -1.77 17.32 2.25 0.04 -1.73 16 25 N -0.36 -4.01 6.83 33.50 0.23 -3.78 16 26 H 0.45 3.19 8.96 -190.44 -1.71 1.49 16 27 N -0.21 -3.22 8.54 33.42 0.29 -2.93 16 28 C 0.08 1.48 2.81 -67.46 -0.19 1.29 16 29 H 0.14 2.58 3.80 -118.76 -0.45 2.13 16 30 C 0.18 4.29 4.59 -2.83 -0.01 4.28 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.53 7.77 -51.93 -0.40 0.13 16 34 H 0.07 1.37 7.25 -51.93 -0.38 0.99 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.39 6.96 -51.93 -0.36 1.03 16 39 H 0.08 1.30 7.62 -51.93 -0.40 0.91 16 40 H 0.17 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.03 0.78 6.84 -51.93 -0.35 0.42 16 43 H 0.06 1.69 7.16 -51.93 -0.37 1.32 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -33.59 351.41 -8.93 -42.52 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.93 Total: 1.22 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -2.52 Total: 7.21 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.09 Total: -58.62 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.59 -8.93 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050136364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.113 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds