Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47213 * 274.97175 * 3 2 1 5 5 H 1.48501 * 109.47132 * 34.96799 * 3 2 1 6 6 H 1.48502 * 109.47086 * 154.96836 * 3 2 1 7 7 C 1.38810 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99850 * 166.95615 * 7 2 1 9 9 N 1.36937 * 119.99929 * 346.95401 * 7 2 1 10 10 C 1.47101 * 125.64538 * 169.35457 * 9 7 2 11 11 C 1.55027 * 107.12400 * 180.18068 * 10 9 7 12 12 H 1.09002 * 112.15569 * 216.41123 * 11 10 9 13 13 C 1.52956 * 107.60263 * 92.90307 * 11 10 9 14 14 C 1.52726 * 110.88219 * 194.02774 * 13 11 10 15 15 C 1.53434 * 107.91280 * 64.54307 * 14 13 11 16 16 N 1.46798 * 107.31929 * 300.85830 * 15 14 13 17 17 C 1.34774 * 119.52118 * 232.83297 * 16 15 14 18 18 O 1.21574 * 120.00027 * 357.08785 * 17 16 15 19 19 C 1.47707 * 120.00294 * 177.35503 * 17 16 15 20 20 C 1.41498 * 126.52086 * 187.35964 * 19 17 16 21 21 C 1.35361 * 105.50512 * 179.88318 * 20 19 17 22 22 C 1.50702 * 126.39156 * 180.15123 * 21 20 19 23 23 F 1.39900 * 109.46649 * 300.29961 * 22 21 20 24 24 F 1.39899 * 109.46879 * 60.29173 * 22 21 20 25 25 N 1.35038 * 107.23001 * 0.37885 * 21 20 19 26 26 H 0.96992 * 124.89179 * 179.72436 * 25 21 20 27 27 N 1.28476 * 110.22831 * 359.75201 * 25 21 20 28 28 C 1.45019 * 120.95534 * 52.55513 * 16 15 14 29 29 H 1.09007 * 109.86346 * 192.81400 * 28 16 15 30 30 C 1.47679 * 125.64567 * 349.37836 * 9 7 2 31 31 H 0.97000 * 119.99957 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.90446 * 60.80696 * 10 9 7 33 33 H 1.08995 * 110.06028 * 299.64085 * 10 9 7 34 34 H 1.09001 * 109.19719 * 314.39135 * 13 11 10 35 35 H 1.09007 * 109.19701 * 73.71555 * 13 11 10 36 36 H 1.09006 * 109.67914 * 183.56536 * 14 13 11 37 37 H 1.08997 * 109.68287 * 304.07527 * 14 13 11 38 38 H 1.08997 * 109.26510 * 181.79823 * 15 14 13 39 39 H 1.09000 * 110.64299 * 60.68364 * 15 14 13 40 40 H 1.07996 * 127.24962 * 359.97438 * 20 19 17 41 41 H 1.09000 * 109.47484 * 180.29819 * 22 21 20 42 42 H 1.08998 * 110.44723 * 84.73022 * 30 9 7 43 43 H 1.08997 * 110.45294 * 322.17985 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3926 2.1071 -1.3948 5 1 1.5041 2.6201 0.8024 6 1 3.5963 1.4122 0.5924 7 6 2.0103 -1.2021 0.0005 8 1 3.0694 -1.2142 -0.2106 9 7 1.3521 -2.3726 0.2688 10 6 1.9012 -3.7254 0.0892 11 6 0.7971 -4.7265 0.5159 12 1 1.2080 -5.6023 1.0183 13 6 0.0069 -5.1057 -0.7377 14 6 -1.2986 -5.8063 -0.3671 15 6 -2.1750 -4.8008 0.3913 16 7 -1.4238 -4.3746 1.5784 17 6 -1.9993 -4.4594 2.7941 18 8 -3.1506 -4.8362 2.8968 19 6 -1.2332 -4.0887 4.0014 20 6 -1.6435 -4.2601 5.3447 21 6 -0.6253 -3.7821 6.0978 22 6 -0.5697 -3.7406 7.6032 23 9 -1.6335 -2.9723 8.0881 24 9 -0.6652 -5.0413 8.1094 25 7 0.3292 -3.3447 5.2487 26 1 1.1719 -2.9473 5.5183 27 7 -0.0397 -3.5301 4.0320 28 6 -0.0695 -3.8694 1.4624 29 1 0.3938 -3.8219 2.4480 30 6 -0.0266 -2.4857 0.7857 31 1 -0.4850 0.8400 -0.0004 32 1 2.7824 -3.8547 0.7177 33 1 2.1643 -3.8864 -0.9562 34 1 -0.2193 -4.2031 -1.3054 35 1 0.6096 -5.7742 -1.3526 36 1 -1.8149 -6.1236 -1.2732 37 1 -1.0853 -6.6742 0.2568 38 1 -3.1013 -5.2884 0.6948 39 1 -2.3985 -3.9370 -0.2348 40 1 -2.5726 -4.6844 5.6953 41 1 0.3737 -3.2958 7.9198 42 1 -0.7451 -2.4397 -0.0327 43 1 -0.2262 -1.6994 1.5136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050136364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = -34.630943 kcal Electronic energy + Delta-G solvation = -30898.342929 eV Core-core repulsion = 26423.418006 eV Total energy + Delta-G solvation = -4474.924923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.06135 -48.07729 -44.00097 -41.49316 -39.48967 -36.65125 -34.63767 -34.07520 -32.94224 -32.90585 -31.06260 -29.03109 -27.57282 -27.13939 -26.18076 -24.46385 -23.31169 -22.53930 -22.01676 -21.34596 -20.22185 -19.09415 -18.81847 -18.44003 -18.37259 -18.20422 -17.21080 -16.93871 -16.62748 -16.22605 -16.14618 -15.83433 -15.43321 -15.20209 -14.93431 -14.91334 -14.61784 -14.48094 -14.43120 -14.14128 -13.96033 -13.74807 -13.49854 -13.31766 -13.03500 -12.76859 -12.51963 -12.44927 -12.27833 -12.09700 -11.91927 -11.79209 -11.64811 -11.39952 -11.37012 -10.84730 -10.71168 -10.58656 -10.47231 -9.61669 -8.82821 -7.87539 -5.21272 0.26980 0.66041 1.44182 1.45731 1.45989 1.56235 1.90902 2.15151 2.49724 2.66423 3.07723 3.13919 3.32723 3.41623 3.65614 3.72395 3.90870 3.95675 4.00206 4.02109 4.08745 4.17771 4.24436 4.41256 4.48383 4.57379 4.73072 4.75720 4.88843 4.91146 4.99507 5.02474 5.07254 5.18357 5.23339 5.40518 5.51423 5.55316 5.58146 5.72268 5.87642 6.17600 6.29644 6.62489 6.99507 7.07283 7.76783 8.44064 9.24233 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.004325 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.692455 B = 6472.557839 C = 8305.021626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.616 5.616 10 C 0.136 3.864 11 C -0.096 4.096 12 H 0.107 0.893 13 C -0.109 4.109 14 C -0.116 4.116 15 C 0.104 3.896 16 N -0.574 5.574 17 C 0.592 3.408 18 O -0.566 6.566 19 C -0.032 4.032 20 C -0.144 4.144 21 C -0.057 4.057 22 C 0.356 3.644 23 F -0.198 7.198 24 F -0.195 7.195 25 N -0.339 5.339 26 H 0.467 0.533 27 N -0.237 5.237 28 C 0.091 3.909 29 H 0.148 0.852 30 C 0.200 3.800 31 H 0.245 0.755 32 H 0.035 0.965 33 H 0.028 0.972 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.172 0.828 41 H 0.181 0.819 42 H -0.008 1.008 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -12.172 13.041 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.343 5.343 10 C 0.011 3.989 11 C -0.115 4.115 12 H 0.125 0.875 13 C -0.147 4.147 14 C -0.154 4.154 15 C -0.018 4.018 16 N -0.304 5.304 17 C 0.380 3.620 18 O -0.445 6.445 19 C -0.190 4.190 20 C -0.172 4.172 21 C -0.185 4.185 22 C 0.302 3.698 23 F -0.180 7.180 24 F -0.176 7.176 25 N -0.057 5.057 26 H 0.317 0.683 27 N -0.075 5.075 28 C -0.015 4.015 29 H 0.164 0.836 30 C 0.074 3.926 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.189 0.811 41 H 0.198 0.802 42 H 0.010 0.990 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.559 -11.813 12.371 17.295 hybrid contribution -0.310 1.395 0.061 1.431 sum 2.249 -10.417 12.431 16.374 Atomic orbital electron populations 1.70198 1.06602 1.25271 1.57521 1.25605 0.96195 1.01068 1.02629 0.85168 0.78090 0.79466 0.77243 1.21579 1.22448 1.18831 1.19386 0.92378 0.84220 1.40779 0.89888 1.44639 1.12784 1.01146 1.75730 1.21697 0.95198 0.84111 0.97924 1.22437 0.95439 0.97410 0.96246 0.87515 1.21482 0.96678 0.99985 0.96540 1.21819 0.95367 0.97204 1.01008 1.21883 0.96078 0.98101 0.85715 1.47401 1.15523 1.61276 1.06153 1.17280 0.85204 0.77285 0.82259 1.90719 1.17297 1.50056 1.86441 1.21910 0.93985 1.07804 0.95277 1.21738 1.01183 1.04157 0.90126 1.22093 0.92887 1.08015 0.95468 1.19816 0.91812 0.75746 0.82476 1.93056 1.61245 1.75230 1.88431 1.93054 1.97142 1.39737 1.87653 1.43514 1.17748 1.42782 1.01646 0.68331 1.73476 1.14291 1.16833 1.02892 1.22886 0.80998 0.93784 1.03808 0.83588 1.20930 0.85704 0.92277 0.93714 0.94621 0.94655 0.95398 0.94308 0.89691 0.88420 0.90133 0.88729 0.92562 0.81086 0.80190 0.99022 0.96347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.87 21.65 0.24 -57.48 16 2 C -0.06 -3.47 5.36 84.86 0.45 -3.01 16 3 Si 0.97 45.18 29.57 68.60 2.03 47.21 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.24 -13.10 10.22 84.03 0.86 -12.24 16 8 H 0.08 4.33 7.86 -2.91 -0.02 4.31 16 9 N -0.62 -30.95 3.40 -691.37 -2.35 -33.31 16 10 C 0.14 5.33 6.63 86.96 0.58 5.91 16 11 C -0.10 -3.13 3.56 -9.67 -0.03 -3.17 16 12 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 13 C -0.11 -3.26 4.67 30.49 0.14 -3.12 16 14 C -0.12 -2.98 6.12 30.65 0.19 -2.79 16 15 C 0.10 3.38 6.16 86.47 0.53 3.91 16 16 N -0.57 -20.93 2.73 -798.63 -2.18 -23.10 16 17 C 0.59 22.19 7.66 86.75 0.66 22.85 16 18 O -0.57 -23.03 16.26 -3.95 -0.06 -23.10 16 19 C -0.03 -1.06 6.85 42.45 0.29 -0.76 16 20 C -0.14 -3.86 10.74 22.41 0.24 -3.62 16 21 C -0.06 -1.11 6.66 41.40 0.28 -0.84 16 22 C 0.36 4.45 5.79 71.24 0.41 4.86 16 23 F -0.20 -3.51 17.32 44.97 0.78 -2.73 16 24 F -0.19 -3.11 17.32 44.97 0.78 -2.33 16 25 N -0.34 -6.81 6.83 -47.93 -0.33 -7.14 16 26 H 0.47 5.28 8.96 -220.00 -1.97 3.31 16 27 N -0.24 -7.18 8.54 -48.18 -0.41 -7.59 16 28 C 0.09 3.46 2.81 46.08 0.13 3.59 16 29 H 0.15 5.45 3.80 -88.84 -0.34 5.11 16 30 C 0.20 9.93 4.59 86.52 0.40 10.33 16 31 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.03 1.10 7.77 -2.39 -0.02 1.08 16 34 H 0.04 1.44 7.25 -2.39 -0.02 1.42 16 35 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 2.97 6.96 -2.39 -0.02 2.95 16 39 H 0.06 2.04 7.62 -2.39 -0.02 2.02 16 40 H 0.17 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.18 0.29 8.14 -2.39 -0.02 0.27 16 42 H -0.01 -0.46 6.84 -2.39 -0.02 -0.47 16 43 H 0.02 1.05 7.16 -2.39 -0.02 1.03 16 Total: -1.00 -77.42 351.41 2.39 -75.03 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -1.23 Total: 12.63 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 5.13 Total: 21.90 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -5.03 Total: -128.62 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 1.56 Total: -5.06 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -77.42 2.39 -75.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050136364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.398 kcal (2) G-P(sol) polarization free energy of solvation -77.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds