Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30412 * 125.97524 * 2 1 4 4 N 1.39923 * 108.96031 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.75312 * 179.97438 * 4 3 2 6 6 C 1.34357 * 108.49802 * 359.73074 * 4 3 2 7 7 Cl 1.73599 * 126.31733 * 180.26341 * 6 4 3 8 8 C 1.38271 * 107.36008 * 0.42547 * 6 4 3 9 9 C 1.47300 * 126.43400 * 179.83992 * 8 6 4 10 10 O 1.21620 * 119.99885 * 269.68812 * 9 8 6 11 11 N 1.34777 * 120.00251 * 89.68745 * 9 8 6 12 12 C 1.46493 * 120.00064 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.51307 * 324.94385 * 12 11 9 14 14 C 1.52434 * 109.29989 * 204.85915 * 12 11 9 15 15 C 1.47090 * 114.22093 * 154.94686 * 14 12 11 16 16 C 1.54864 * 110.31997 * 62.79091 * 15 14 12 17 17 N 1.44574 * 109.60560 * 288.73063 * 16 15 14 18 18 C 1.36937 * 118.64836 * 270.75134 * 17 16 15 19 19 H 1.07995 * 119.99981 * 26.48840 * 18 17 16 20 20 C 1.38814 * 120.00253 * 206.49692 * 18 17 16 21 21 N 1.31621 * 119.99944 * 15.67002 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 195.67665 * 20 18 17 23 23 H 1.48499 * 109.47280 * 89.99582 * 22 20 18 24 24 H 1.48506 * 109.46970 * 209.99488 * 22 20 18 25 25 H 1.48494 * 109.47128 * 329.99311 * 22 20 18 26 26 C 1.47611 * 122.71052 * 90.72711 * 17 16 15 27 27 C 1.50883 * 109.49328 * 85.00151 * 12 11 9 28 28 H 1.09006 * 109.47541 * 269.97594 * 1 2 3 29 29 H 1.08997 * 109.47152 * 29.97715 * 1 2 3 30 30 H 1.08998 * 109.47473 * 149.97925 * 1 2 3 31 31 H 1.09002 * 109.46902 * 90.03004 * 5 4 3 32 32 H 1.08994 * 109.47210 * 210.02519 * 5 4 3 33 33 H 1.09003 * 109.46774 * 330.03083 * 5 4 3 34 34 H 0.96998 * 119.99877 * 0.02562 * 11 9 8 35 35 H 1.09002 * 108.57232 * 33.71884 * 14 12 11 36 36 H 1.08997 * 108.43422 * 276.08065 * 14 12 11 37 37 H 1.09003 * 109.32986 * 302.53220 * 15 14 12 38 38 H 1.08995 * 109.18876 * 182.96496 * 15 14 12 39 39 H 1.09005 * 109.44873 * 168.69056 * 16 15 14 40 40 H 1.09001 * 109.42513 * 48.76722 * 16 15 14 41 41 H 0.96993 * 119.99979 * 180.02562 * 21 20 18 42 42 H 1.09000 * 108.94763 * 197.18259 * 26 17 16 43 43 H 1.09003 * 108.87491 * 78.50822 * 26 17 16 44 44 H 1.08992 * 109.36719 * 91.66301 * 27 12 11 45 45 H 1.09004 * 109.36498 * 331.91849 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 -0.0006 5 6 4.7775 1.5323 -0.0013 6 6 3.6458 -0.6972 0.0050 7 17 5.0707 -1.6887 0.0132 8 6 2.3373 -1.1438 -0.0006 9 6 1.8921 -2.5479 -0.0008 10 8 1.7079 -3.1273 -1.0541 11 7 1.6889 -3.1906 1.1663 12 6 1.2468 -4.5873 1.1661 13 1 0.5741 -4.7561 0.3251 14 6 0.5184 -4.8853 2.4716 15 6 -0.4467 -5.9920 2.3850 16 6 0.2813 -7.3146 2.0398 17 7 0.7298 -7.2771 0.6659 18 6 -0.1153 -7.7272 -0.3131 19 1 -1.1839 -7.6955 -0.1605 20 6 0.4016 -8.2243 -1.5017 21 7 1.6738 -8.5528 -1.5796 22 14 -0.7082 -8.4268 -2.9905 23 1 -0.6910 -7.1782 -3.7942 24 1 -0.2206 -9.5570 -3.8213 25 1 -2.0952 -8.7062 -2.5396 26 6 2.0609 -6.7731 0.2748 27 6 2.4457 -5.4949 1.0417 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 5.0676 1.7519 1.0262 32 1 5.6048 1.0437 -0.5158 33 1 4.5278 2.4609 -0.5147 34 1 1.8355 -2.7284 2.0064 35 1 -0.0127 -3.9868 2.7858 36 1 1.2599 -5.1312 3.2316 37 1 -1.1804 -5.7711 1.6099 38 1 -0.9552 -6.0996 3.3430 39 1 -0.4034 -8.1518 2.1753 40 1 1.1405 -7.4382 2.6989 41 1 2.0351 -8.8998 -2.4102 42 1 2.0578 -6.5574 -0.7937 43 1 2.8037 -7.5447 0.4776 44 1 2.8005 -5.7634 2.0367 45 1 3.2382 -4.9751 0.5034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052601447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = 35.046373 kcal Electronic energy + Delta-G solvation = -28314.407543 eV Core-core repulsion = 24394.300736 eV Total energy + Delta-G solvation = -3920.106807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62711 -40.78210 -39.05772 -38.18064 -36.26744 -35.19953 -34.42980 -32.71415 -32.37350 -31.29983 -30.44506 -27.90068 -26.99982 -25.55831 -25.07719 -23.49097 -21.80426 -21.58466 -21.00382 -20.82653 -18.84197 -18.52232 -17.55984 -17.36686 -16.95491 -16.68312 -16.32529 -16.06319 -15.63808 -15.29673 -14.99910 -14.79491 -14.49059 -14.42734 -14.24103 -13.97629 -13.73357 -13.65853 -13.57229 -13.30221 -13.18022 -12.98016 -12.89879 -12.79305 -12.75462 -12.47768 -12.13786 -11.98914 -11.92151 -11.71052 -11.48537 -11.36287 -11.30529 -10.99112 -10.40856 -10.38927 -10.05224 -9.82753 -8.60932 -7.82350 -5.27345 0.10606 0.24561 1.13779 1.42623 1.42933 1.48472 1.51227 1.53224 2.28866 2.53223 3.22673 3.32351 3.68796 3.72761 3.84285 3.99061 4.12301 4.19125 4.20646 4.29593 4.43962 4.51133 4.52877 4.56644 4.70154 4.73171 4.73892 4.85337 4.89102 4.99011 5.06183 5.20396 5.25541 5.27488 5.30046 5.40126 5.46789 5.55751 5.63277 5.67250 5.74697 5.81759 6.25994 6.44913 6.60494 7.22390 7.30111 8.00646 8.38610 9.22568 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.003376 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.614115 B = 8291.292775 C = 8473.158526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.117 3.883 3 N -0.283 5.283 4 N -0.347 5.347 5 C 0.080 3.920 6 C 0.156 3.844 7 Cl 0.021 6.979 8 C -0.279 4.279 9 C 0.595 3.405 10 O -0.575 6.575 11 N -0.697 5.697 12 C 0.164 3.836 13 H 0.054 0.946 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.147 3.853 17 N -0.604 5.604 18 C -0.258 4.258 19 H 0.066 0.934 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.955 3.045 23 H -0.297 1.297 24 H -0.293 1.293 25 H -0.263 1.263 26 C 0.197 3.803 27 C -0.131 4.131 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.412 0.588 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.047 0.953 41 H 0.245 0.755 42 H 0.028 0.972 43 H -0.005 1.005 44 H 0.074 0.926 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 22.626 11.545 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 N -0.107 5.107 4 N -0.128 5.128 5 C -0.059 4.059 6 C -0.003 4.003 7 Cl 0.049 6.951 8 C -0.295 4.295 9 C 0.380 3.620 10 O -0.453 6.453 11 N -0.348 5.348 12 C 0.060 3.940 13 H 0.072 0.928 14 C -0.141 4.141 15 C -0.172 4.172 16 C 0.021 3.979 17 N -0.326 5.326 18 C -0.388 4.388 19 H 0.084 0.916 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.784 3.216 23 H -0.225 1.225 24 H -0.220 1.220 25 H -0.187 1.187 26 C 0.071 3.929 27 C -0.171 4.171 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.013 0.987 44 H 0.093 0.907 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.284 23.419 10.716 26.291 hybrid contribution 0.228 -1.345 -1.189 1.810 sum 5.512 22.074 9.527 24.666 Atomic orbital electron populations 1.20408 0.83834 1.04237 1.05165 1.22630 0.98223 0.87646 0.96393 1.77222 0.85404 1.21434 1.26655 1.48721 1.07238 1.02462 1.54422 1.22515 0.82641 0.94509 1.06189 1.21984 0.89822 0.84999 1.03458 1.98455 1.34663 1.65370 1.96563 1.19787 0.91535 0.94517 1.23688 1.17407 0.76269 0.84551 0.83755 1.90871 1.52388 1.68746 1.33299 1.46046 1.67603 1.13024 1.08135 1.20224 0.95203 0.78697 0.99922 0.92793 1.20506 0.99064 0.99674 0.94817 1.21288 0.98177 0.96379 1.01359 1.20961 0.96718 0.95629 0.84589 1.43851 1.14609 1.71766 1.02406 1.19489 0.89706 1.33445 0.96194 0.91589 1.25705 0.97353 0.99447 1.02046 1.70208 1.14298 1.47856 1.25784 0.85444 0.79390 0.76440 0.80341 1.22453 1.21995 1.18688 1.20568 0.85216 0.90606 0.96478 1.22238 0.97465 0.96651 1.00779 0.87377 0.88556 0.91306 0.87543 0.87768 0.86782 0.75101 0.89987 0.90276 0.94214 0.89162 0.94322 0.93437 0.94569 0.95374 0.98686 0.90695 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.28 71.24 0.73 -0.76 16 2 C 0.12 2.88 7.26 43.53 0.32 3.19 16 3 N -0.28 -6.59 12.49 -46.66 -0.58 -7.17 16 4 N -0.35 -7.02 3.98 -357.41 -1.42 -8.44 16 5 C 0.08 0.79 11.28 127.77 1.44 2.23 16 6 C 0.16 3.82 7.54 84.31 0.64 4.45 16 7 Cl 0.02 0.48 28.57 -2.72 -0.08 0.40 16 8 C -0.28 -7.93 5.88 -20.12 -0.12 -8.05 16 9 C 0.60 20.63 7.01 86.63 0.61 21.23 16 10 O -0.57 -26.87 16.77 -4.09 -0.07 -26.94 16 11 N -0.70 -20.29 4.92 -450.12 -2.22 -22.51 16 12 C 0.16 5.76 2.06 44.12 0.09 5.85 16 13 H 0.05 2.51 6.91 -2.38 -0.02 2.49 16 14 C -0.10 -2.78 4.69 28.57 0.13 -2.65 16 15 C -0.13 -4.11 5.74 29.39 0.17 -3.94 16 16 C 0.15 5.85 5.65 87.38 0.49 6.34 16 17 N -0.60 -30.68 2.27 -698.35 -1.58 -32.26 16 18 C -0.26 -14.68 9.44 84.03 0.79 -13.89 16 19 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 20 C -0.05 -2.99 4.87 84.86 0.41 -2.58 16 21 N -0.93 -58.64 11.01 21.65 0.24 -58.40 16 22 Si 0.95 48.27 29.58 68.60 2.03 50.30 16 23 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 24 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 25 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 26 C 0.20 10.16 4.66 86.49 0.40 10.56 16 27 C -0.13 -5.17 5.39 30.23 0.16 -5.00 16 28 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.57 8.01 -2.39 -0.02 1.55 16 31 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.79 7.78 -2.39 -0.02 0.77 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.41 8.75 8.57 -92.71 -0.79 7.95 16 35 H 0.08 1.76 8.03 -2.39 -0.02 1.74 16 36 H 0.08 1.82 7.35 -2.39 -0.02 1.81 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.04 1.57 7.99 -2.38 -0.02 1.55 16 40 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.03 1.71 6.33 -2.39 -0.02 1.69 16 43 H 0.00 -0.27 8.03 -2.39 -0.02 -0.29 16 44 H 0.07 2.51 7.31 -2.39 -0.02 2.49 16 45 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 Total: -1.00 -79.96 379.93 2.81 -77.16 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.22 Total: 10.86 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.27 Total: 17.00 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -5.57 Total: -128.78 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.07 Total: -26.94 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Total: -79.96 2.81 -77.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052601447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.205 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds