Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.89325 * 2 1 4 4 N 1.40083 * 108.23716 * 180.29339 * 3 2 1 5 5 C 1.46501 * 126.03540 * 179.71996 * 4 3 2 6 6 C 1.34979 * 107.92723 * 359.71636 * 4 3 2 7 7 Cl 1.73603 * 126.13984 * 180.02562 * 6 4 3 8 8 C 1.35465 * 107.72120 * 0.02562 * 6 4 3 9 9 C 1.50693 * 126.05157 * 180.02562 * 8 6 4 10 10 C 1.50694 * 109.47244 * 90.02436 * 9 8 6 11 11 O 1.21280 * 120.00446 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99871 * 179.97438 * 10 9 8 13 13 C 1.47017 * 125.64698 * 179.97438 * 12 10 9 14 14 C 1.54327 * 107.27319 * 179.00007 * 13 12 10 15 15 H 1.08997 * 110.71819 * 96.16791 * 14 13 12 16 16 C 1.53001 * 110.87217 * 219.37311 * 14 13 12 17 17 C 1.55160 * 102.93675 * 337.80610 * 14 13 12 18 18 H 1.09002 * 111.00648 * 277.38792 * 17 14 13 19 19 N 1.46506 * 111.00123 * 153.57912 * 17 14 13 20 20 C 1.36933 * 119.99796 * 158.18037 * 19 17 14 21 21 H 1.08002 * 120.00461 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99778 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00050 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47005 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47137 * 120.00211 * 24 22 20 27 27 H 1.48496 * 109.47432 * 240.00392 * 24 22 20 28 28 C 1.47471 * 125.62963 * 0.02684 * 12 10 9 29 29 H 1.09005 * 109.46787 * 270.17142 * 1 2 3 30 30 H 1.09001 * 109.47064 * 30.17068 * 1 2 3 31 31 H 1.09005 * 109.47117 * 150.17714 * 1 2 3 32 32 H 1.08995 * 109.46887 * 269.99854 * 5 4 3 33 33 H 1.09010 * 109.46715 * 29.99810 * 5 4 3 34 34 H 1.08998 * 109.47351 * 149.99685 * 5 4 3 35 35 H 1.08996 * 109.47468 * 330.01985 * 9 8 6 36 36 H 1.09005 * 109.46919 * 210.02723 * 9 8 6 37 37 H 1.08998 * 109.88500 * 59.57916 * 13 12 10 38 38 H 1.09007 * 109.88243 * 298.41557 * 13 12 10 39 39 H 1.09004 * 109.46879 * 173.60759 * 16 14 13 40 40 H 1.08994 * 109.47209 * 293.60467 * 16 14 13 41 41 H 1.09001 * 109.47177 * 53.61250 * 16 14 13 42 42 H 0.96994 * 119.99820 * 338.17529 * 19 17 14 43 43 H 0.97000 * 119.99703 * 179.97438 * 23 22 20 44 44 H 1.09001 * 110.34356 * 85.23058 * 28 12 10 45 45 H 1.08994 * 110.40058 * 322.89344 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6089 0.6351 -0.0068 5 6 4.7894 1.5026 -0.0149 6 6 3.6153 -0.7147 -0.0045 7 17 5.0221 -1.7319 -0.0101 8 6 2.3269 -1.1332 0.0029 9 6 1.8598 -2.5659 0.0083 10 6 1.7107 -3.0402 1.4309 11 8 1.9588 -2.2888 2.3499 12 7 1.3006 -4.2994 1.6819 13 6 1.1138 -4.8899 3.0152 14 6 0.6137 -6.3354 2.8102 15 1 1.4435 -7.0406 2.8557 16 6 -0.4561 -6.6938 3.8436 17 6 0.0062 -6.2937 1.3830 18 1 -1.0107 -5.9019 1.4025 19 7 0.0438 -7.6180 0.7575 20 6 -0.8091 -7.9132 -0.2722 21 1 -1.5098 -7.1699 -0.6231 22 6 -0.7732 -9.1678 -0.8653 23 7 0.0803 -10.0737 -0.4374 24 14 -1.9372 -9.5707 -2.2696 25 1 -2.7907 -8.3905 -2.5592 26 1 -1.1506 -9.9210 -3.4795 27 1 -2.7952 -10.7207 -1.8869 28 6 0.9661 -5.3129 0.6642 29 1 -0.3633 0.0031 1.0277 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3633 -0.8916 -0.5111 32 1 5.0764 1.7159 -1.0445 33 1 4.5580 2.4358 0.4987 34 1 5.6121 1.0014 0.4952 35 1 2.5908 -3.1884 -0.5076 36 1 0.8986 -2.6365 -0.5010 37 1 0.3735 -4.3172 3.5739 38 1 2.0619 -4.8984 3.5530 39 1 -0.8734 -7.6733 3.6099 40 1 -0.0083 -6.7174 4.8370 41 1 -1.2490 -5.9462 3.8201 42 1 0.6728 -8.2856 1.0728 43 1 0.1051 -10.9505 -0.8516 44 1 1.8663 -5.8336 0.3377 45 1 0.4666 -4.8477 -0.1855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054862381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 46.286509 kcal Electronic energy + Delta-G solvation = -27468.125726 eV Core-core repulsion = 23548.506327 eV Total energy + Delta-G solvation = -3919.619398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58395 -39.67439 -37.50740 -37.07574 -34.46726 -34.05731 -32.63991 -31.78726 -30.71412 -29.95243 -28.08684 -27.48546 -26.10860 -24.79392 -23.92587 -21.65881 -21.05824 -20.19385 -19.84397 -18.86675 -17.23954 -17.06248 -16.83996 -15.98043 -15.91179 -15.29998 -14.98476 -14.59513 -14.05763 -13.88980 -13.69580 -13.56519 -13.28308 -13.08790 -12.97350 -12.86732 -12.83699 -12.67536 -12.59763 -12.43524 -11.95357 -11.86164 -11.71397 -11.67097 -11.56407 -11.12075 -11.02327 -10.75678 -10.67664 -10.60436 -10.22978 -9.94262 -9.82330 -9.62647 -9.28824 -9.03893 -8.53963 -8.28645 -7.10468 -5.87446 -3.18069 1.26839 1.46230 2.38809 2.42016 2.91450 3.36438 3.38147 3.44482 3.45913 4.13396 4.49632 4.71337 4.77621 4.82434 4.87378 4.92236 5.07880 5.12017 5.15239 5.22243 5.25669 5.47604 5.54371 5.60797 5.64866 5.66711 5.75916 5.77341 5.81145 5.84774 5.95478 6.02763 6.22411 6.25483 6.35429 6.40009 6.47262 6.49815 6.56943 6.64618 6.87270 7.38735 7.61777 7.85520 8.29830 8.46139 9.42247 9.96129 10.30975 11.34526 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.002783 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.466192 B =10057.451093 C =10531.033138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.100 3.900 3 N -0.277 5.277 4 N -0.369 5.369 5 C 0.099 3.901 6 C 0.136 3.864 7 Cl -0.004 7.004 8 C -0.186 4.186 9 C -0.062 4.062 10 C 0.529 3.471 11 O -0.546 6.546 12 N -0.615 5.615 13 C 0.118 3.882 14 C -0.114 4.114 15 H 0.083 0.917 16 C -0.134 4.134 17 C 0.177 3.823 18 H 0.067 0.933 19 N -0.711 5.711 20 C -0.246 4.246 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.071 3.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 19.165 1.920 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 N -0.101 5.101 4 N -0.153 5.153 5 C -0.042 4.042 6 C -0.017 4.017 7 Cl 0.024 6.976 8 C -0.199 4.199 9 C -0.102 4.102 10 C 0.317 3.683 11 O -0.423 6.423 12 N -0.349 5.349 13 C -0.005 4.005 14 C -0.134 4.134 15 H 0.101 0.899 16 C -0.191 4.191 17 C 0.065 3.935 18 H 0.085 0.915 19 N -0.350 5.350 20 C -0.377 4.377 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.055 4.055 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.324 20.881 2.249 22.242 hybrid contribution 0.102 -1.517 -0.773 1.706 sum 7.425 19.364 1.476 20.791 Atomic orbital electron populations 1.20250 0.85979 1.03547 1.03609 1.22083 0.97100 0.89449 0.97992 1.77449 0.84978 1.21578 1.26059 1.48366 1.06299 1.02639 1.58010 1.21920 0.83660 0.94944 1.03680 1.21349 0.90138 0.83872 1.06335 1.98408 1.38075 1.64163 1.96935 1.18952 0.89624 0.95753 1.15557 1.19928 1.03967 0.91363 0.94979 1.20169 0.76773 0.80227 0.91138 1.90667 1.50861 1.54164 1.46658 1.48545 1.66024 1.11494 1.08823 1.21931 1.00374 0.93496 0.84684 1.22496 0.99069 0.94621 0.97240 0.89869 1.21658 0.97792 1.02426 0.97267 1.21364 0.95951 0.87151 0.89033 0.91502 1.42311 1.44046 1.08960 1.39713 1.19278 1.12621 0.97237 1.08597 0.90898 1.24762 0.99365 0.96407 0.99974 1.69668 1.38571 1.05363 1.44035 0.86133 0.80162 0.78002 0.81944 1.20427 1.21809 1.21827 1.23539 1.00494 0.89834 0.91648 0.89940 0.90561 0.90013 0.90349 0.88725 0.89411 0.88146 0.87615 0.91771 0.92231 0.91355 0.93278 0.92909 0.77874 0.93403 0.91199 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.26 36.01 0.37 -0.39 16 2 C 0.10 1.32 7.22 -82.41 -0.59 0.73 16 3 N -0.28 -3.82 12.57 33.67 0.42 -3.39 16 4 N -0.37 -4.54 4.01 -64.90 -0.26 -4.81 16 5 C 0.10 0.75 11.31 59.85 0.68 1.43 16 6 C 0.14 1.79 7.45 -17.16 -0.13 1.66 16 7 Cl 0.00 -0.04 28.34 -51.86 -1.47 -1.51 16 8 C -0.19 -2.55 4.60 -105.01 -0.48 -3.04 16 9 C -0.06 -0.80 4.84 -29.04 -0.14 -0.94 16 10 C 0.53 8.35 7.84 -10.99 -0.09 8.27 16 11 O -0.55 -10.28 16.36 5.56 0.09 -10.19 16 12 N -0.61 -9.52 3.33 -170.48 -0.57 -10.08 16 13 C 0.12 1.76 6.47 -3.07 -0.02 1.74 16 14 C -0.11 -1.75 3.18 -88.78 -0.28 -2.03 16 15 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 16 C -0.13 -1.87 9.17 37.16 0.34 -1.53 16 17 C 0.18 3.17 3.14 -65.77 -0.21 2.96 16 18 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 19 N -0.71 -16.06 5.26 -51.34 -0.27 -16.33 16 20 C -0.25 -6.27 9.97 -15.06 -0.15 -6.42 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 24 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.07 1.14 6.39 -2.50 -0.02 1.12 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.71 7.25 -51.93 -0.38 0.34 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.09 0.56 7.80 -51.93 -0.41 0.15 16 35 H 0.10 1.23 7.91 -51.93 -0.41 0.82 16 36 H 0.11 1.18 6.95 -51.93 -0.36 0.82 16 37 H 0.06 0.94 7.78 -51.93 -0.40 0.53 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.39 9.41 7.73 -40.82 -0.32 9.10 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -32.03 389.40 -8.14 -40.17 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.84 Total: 6.64 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.82 Total: 3.24 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.05 Total: -60.37 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.47 Total: -1.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.03 -8.14 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054862381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.457 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds