Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30418 * 125.97993 * 2 1 4 4 N 1.39921 * 108.95883 * 180.27604 * 3 2 1 5 5 C 1.46507 * 125.74524 * 179.75883 * 4 3 2 6 6 C 1.34340 * 108.50557 * 359.74077 * 4 3 2 7 7 Cl 1.73605 * 126.31956 * 180.02562 * 6 4 3 8 8 C 1.38280 * 107.36084 * 359.97438 * 6 4 3 9 9 C 1.47305 * 126.43282 * 179.97438 * 8 6 4 10 10 O 1.21622 * 119.99339 * 90.03147 * 9 8 6 11 11 N 1.34772 * 120.00468 * 269.75281 * 9 8 6 12 12 C 1.46500 * 120.00103 * 180.27796 * 11 9 8 13 13 C 1.52998 * 109.47115 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47508 * 175.45805 * 13 12 11 15 15 C 1.53006 * 115.54719 * 279.32751 * 14 13 12 16 16 N 1.46496 * 109.46836 * 294.94762 * 15 14 13 17 17 C 1.36939 * 119.99954 * 174.37385 * 16 15 14 18 18 H 1.07999 * 119.99652 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00461 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99527 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00461 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46963 * 60.00130 * 21 19 17 23 23 H 1.48495 * 109.47331 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47174 * 300.00744 * 21 19 17 25 25 C 1.52992 * 117.50168 * 133.61195 * 14 13 12 26 26 C 1.52996 * 60.00269 * 252.51198 * 25 14 13 27 27 H 1.08999 * 109.47576 * 270.15165 * 1 2 3 28 28 H 1.09005 * 109.46943 * 30.15642 * 1 2 3 29 29 H 1.09007 * 109.46985 * 150.15086 * 1 2 3 30 30 H 1.09001 * 109.46717 * 269.97887 * 5 4 3 31 31 H 1.08994 * 109.47106 * 29.97273 * 5 4 3 32 32 H 1.08997 * 109.47015 * 149.98338 * 5 4 3 33 33 H 0.97002 * 119.99444 * 0.28062 * 11 9 8 34 34 H 1.08998 * 109.47043 * 300.00371 * 12 11 9 35 35 H 1.08997 * 109.46724 * 60.00453 * 12 11 9 36 36 H 1.09009 * 109.47227 * 295.45911 * 13 12 11 37 37 H 1.09002 * 109.47034 * 55.45328 * 13 12 11 38 38 H 1.09003 * 109.47387 * 54.94917 * 15 14 13 39 39 H 1.08996 * 109.46819 * 174.94784 * 15 14 13 40 40 H 0.96998 * 120.00262 * 354.36753 * 16 15 14 41 41 H 0.96997 * 119.99440 * 179.97438 * 20 19 17 42 42 H 1.09000 * 117.49792 * 0.02562 * 25 14 13 43 43 H 1.09008 * 117.49849 * 145.02290 * 25 14 13 44 44 H 1.08996 * 117.50169 * 252.50885 * 26 25 14 45 45 H 1.08998 * 117.49428 * 107.48736 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0554 0.0000 4 7 3.6111 0.6458 -0.0064 5 6 4.7775 1.5323 -0.0134 6 6 3.6459 -0.6971 -0.0045 7 17 5.0708 -1.6888 -0.0099 8 6 2.3372 -1.1438 0.0035 9 6 1.8922 -2.5480 0.0077 10 8 1.7140 -3.1263 1.0627 11 7 1.6770 -3.1902 -1.1575 12 6 1.2285 -4.5849 -1.1533 13 6 1.0619 -5.0714 -2.5942 14 6 0.7036 -6.5588 -2.5922 15 6 1.8799 -7.5207 -2.4130 16 7 2.7775 -7.4145 -3.5659 17 6 3.9637 -8.0986 -3.5754 18 1 4.2376 -8.7161 -2.7327 19 6 4.8140 -7.9984 -4.6679 20 7 4.4803 -7.2454 -5.6947 21 14 6.4325 -8.9310 -4.6806 22 1 6.1654 -10.3874 -4.5662 23 1 7.1516 -8.6574 -5.9507 24 1 7.2672 -8.4894 -3.5345 25 6 -0.4471 -7.0095 -3.4941 26 6 -0.6382 -6.9614 -1.9769 27 1 -0.3634 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5163 29 1 -0.3633 -0.8914 -0.5115 30 1 5.0617 1.7505 -1.0428 31 1 4.5308 2.4615 0.5001 32 1 5.6078 1.0443 0.4970 33 1 1.8191 -2.7289 -1.9989 34 1 1.9683 -5.2029 -0.6447 35 1 0.2739 -4.6579 -0.6322 36 1 0.2655 -4.5064 -3.0788 37 1 1.9950 -4.9232 -3.1379 38 1 2.4239 -7.2640 -1.5040 39 1 1.5059 -8.5416 -2.3365 40 1 2.5315 -6.8596 -4.3225 41 1 5.0747 -7.1751 -6.4580 42 1 -0.9486 -6.2464 -4.0893 43 1 -0.3663 -7.9916 -3.9603 44 1 -0.6831 -7.9116 -1.4449 45 1 -1.2656 -6.1665 -1.5737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166474805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = 64.766595 kcal Electronic energy + Delta-G solvation = -26892.178432 eV Core-core repulsion = 22973.360390 eV Total energy + Delta-G solvation = -3918.818042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75910 -39.30785 -38.15157 -37.26879 -34.72343 -34.44415 -33.88320 -31.09552 -30.73866 -30.07911 -29.36341 -26.41045 -25.86772 -23.78832 -22.74356 -22.33949 -21.61428 -20.84967 -20.15528 -18.65730 -17.80886 -17.03625 -16.57527 -16.29121 -15.80068 -15.60985 -15.15876 -14.78113 -14.42818 -14.07322 -13.98784 -13.88511 -13.59696 -13.22185 -13.11258 -13.01058 -12.91120 -12.67152 -12.62041 -12.20404 -12.05548 -11.99417 -11.85501 -11.41924 -11.10484 -11.06693 -10.93379 -10.81158 -10.58328 -10.17323 -9.96145 -9.88300 -9.61774 -9.59486 -9.29613 -8.95582 -8.94122 -8.81904 -6.87619 -5.74020 -3.01526 1.01704 1.12105 2.01970 2.14764 2.55315 3.30205 3.45345 3.49633 3.50600 3.98908 4.09976 4.43587 4.63324 4.69029 4.75609 4.86351 4.96734 5.05434 5.06656 5.14769 5.20020 5.30880 5.36165 5.43137 5.52343 5.57925 5.62918 5.72094 5.80517 5.94614 6.01556 6.18856 6.20521 6.23602 6.25907 6.46746 6.49192 6.49945 6.61497 6.79809 6.88074 7.10645 7.55133 7.72434 8.25184 8.45342 9.56844 10.15615 10.51450 11.48781 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.003105 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.750985 B = 9014.812960 C =11047.241491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.120 3.880 3 N -0.275 5.275 4 N -0.354 5.354 5 C 0.092 3.908 6 C 0.159 3.841 7 Cl 0.020 6.980 8 C -0.258 4.258 9 C 0.596 3.404 10 O -0.530 6.530 11 N -0.715 5.715 12 C 0.125 3.875 13 C -0.091 4.091 14 C -0.119 4.119 15 C 0.188 3.812 16 N -0.727 5.727 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.165 4.165 26 C -0.177 4.177 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.016 0.984 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 18.395 10.283 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 N -0.098 5.098 4 N -0.135 5.135 5 C -0.049 4.049 6 C 0.002 3.998 7 Cl 0.049 6.951 8 C -0.274 4.274 9 C 0.380 3.620 10 O -0.405 6.405 11 N -0.366 5.366 12 C 0.002 3.998 13 C -0.129 4.129 14 C -0.120 4.120 15 C 0.060 3.940 16 N -0.371 5.371 17 C -0.368 4.368 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.202 4.202 26 C -0.215 4.215 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.429 19.129 11.090 23.027 hybrid contribution 1.377 -1.021 -0.776 1.882 sum -5.052 18.108 10.314 21.443 Atomic orbital electron populations 1.20303 0.85298 1.03999 1.03952 1.22295 0.97142 0.88280 0.96930 1.77257 0.84823 1.21564 1.26196 1.48353 1.06645 1.02701 1.55849 1.22092 0.83777 0.94497 1.04486 1.22033 0.90269 0.84229 1.03304 1.98477 1.35001 1.65124 1.96539 1.19817 0.90362 0.95349 1.21901 1.17050 0.77051 0.83967 0.83974 1.90802 1.51084 1.67501 1.31156 1.46034 1.68180 1.14113 1.08259 1.21407 1.00134 0.80368 0.97912 1.21256 1.03073 0.93347 0.95204 1.21560 0.90555 0.94992 1.04863 1.20181 0.88364 0.93798 0.91644 1.42279 1.19584 1.57290 1.17950 1.19194 0.95088 1.21066 1.01481 0.91350 1.24698 0.98905 1.00564 0.96758 1.69654 1.37810 1.43136 1.07653 0.86299 0.83873 0.79566 0.76647 1.21317 1.21738 1.21350 1.22960 1.01735 1.02955 0.92544 1.22972 0.99529 1.02736 0.96243 0.89575 0.89966 0.89922 0.89601 0.88244 0.88932 0.76424 0.90815 0.91538 0.91906 0.89436 0.95541 0.96600 0.78156 0.93586 0.89332 0.88651 0.88970 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.28 36.00 0.37 -0.27 16 2 C 0.12 1.39 7.26 -82.02 -0.60 0.79 16 3 N -0.28 -3.22 12.49 33.90 0.42 -2.80 16 4 N -0.35 -3.76 3.98 -64.32 -0.26 -4.02 16 5 C 0.09 0.56 11.28 59.85 0.68 1.24 16 6 C 0.16 1.94 7.54 -16.44 -0.12 1.82 16 7 Cl 0.02 0.24 28.56 -51.86 -1.48 -1.24 16 8 C -0.26 -3.39 5.88 -105.02 -0.62 -4.01 16 9 C 0.60 8.76 7.20 -12.58 -0.09 8.67 16 10 O -0.53 -9.63 17.11 5.26 0.09 -9.54 16 11 N -0.72 -9.35 5.55 -61.42 -0.34 -9.70 16 12 C 0.12 1.75 5.51 -4.04 -0.02 1.73 16 13 C -0.09 -1.31 5.24 -26.73 -0.14 -1.45 16 14 C -0.12 -1.88 1.52 -154.51 -0.23 -2.11 16 15 C 0.19 3.79 6.10 -4.04 -0.02 3.76 16 16 N -0.73 -18.13 5.30 -59.91 -0.32 -18.45 16 17 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 21 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 C -0.16 -2.39 9.90 -26.74 -0.26 -2.66 16 26 C -0.18 -2.33 9.57 -26.73 -0.26 -2.59 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.45 7.77 -51.93 -0.40 0.05 16 33 H 0.40 4.54 8.46 -40.82 -0.35 4.20 16 34 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 35 H 0.07 0.89 7.80 -51.93 -0.41 0.49 16 36 H 0.06 0.77 7.94 -51.92 -0.41 0.36 16 37 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 38 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 39 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 40 H 0.38 10.04 7.46 -40.82 -0.30 9.73 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 42 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 43 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.03 7.98 -51.93 -0.41 0.62 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -34.24 399.28 -8.55 -42.79 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.82 Total: 9.01 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.57 Total: -2.33 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.23 Total: -62.17 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.48 Total: -1.24 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.24 -8.55 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166474805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.561 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds