Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30418 * 125.97993 * 2 1 4 4 N 1.39921 * 108.95883 * 180.27604 * 3 2 1 5 5 C 1.46507 * 125.74524 * 179.75883 * 4 3 2 6 6 C 1.34340 * 108.50557 * 359.74077 * 4 3 2 7 7 Cl 1.73605 * 126.31956 * 180.02562 * 6 4 3 8 8 C 1.38280 * 107.36084 * 359.97438 * 6 4 3 9 9 C 1.47305 * 126.43282 * 179.97438 * 8 6 4 10 10 O 1.21622 * 119.99339 * 90.03147 * 9 8 6 11 11 N 1.34772 * 120.00468 * 269.75281 * 9 8 6 12 12 C 1.46500 * 120.00103 * 180.27796 * 11 9 8 13 13 C 1.52998 * 109.47115 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47508 * 175.45805 * 13 12 11 15 15 C 1.53006 * 115.54719 * 279.32751 * 14 13 12 16 16 N 1.46496 * 109.46836 * 294.94762 * 15 14 13 17 17 C 1.36939 * 119.99954 * 174.37385 * 16 15 14 18 18 H 1.07999 * 119.99652 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00461 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99527 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00461 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46963 * 60.00130 * 21 19 17 23 23 H 1.48495 * 109.47331 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47174 * 300.00744 * 21 19 17 25 25 C 1.52992 * 117.50168 * 133.61195 * 14 13 12 26 26 C 1.52996 * 60.00269 * 252.51198 * 25 14 13 27 27 H 1.08999 * 109.47576 * 270.15165 * 1 2 3 28 28 H 1.09005 * 109.46943 * 30.15642 * 1 2 3 29 29 H 1.09007 * 109.46985 * 150.15086 * 1 2 3 30 30 H 1.09001 * 109.46717 * 269.97887 * 5 4 3 31 31 H 1.08994 * 109.47106 * 29.97273 * 5 4 3 32 32 H 1.08997 * 109.47015 * 149.98338 * 5 4 3 33 33 H 0.97002 * 119.99444 * 0.28062 * 11 9 8 34 34 H 1.08998 * 109.47043 * 300.00371 * 12 11 9 35 35 H 1.08997 * 109.46724 * 60.00453 * 12 11 9 36 36 H 1.09009 * 109.47227 * 295.45911 * 13 12 11 37 37 H 1.09002 * 109.47034 * 55.45328 * 13 12 11 38 38 H 1.09003 * 109.47387 * 54.94917 * 15 14 13 39 39 H 1.08996 * 109.46819 * 174.94784 * 15 14 13 40 40 H 0.96998 * 120.00262 * 354.36753 * 16 15 14 41 41 H 0.96997 * 119.99440 * 179.97438 * 20 19 17 42 42 H 1.09000 * 117.49792 * 0.02562 * 25 14 13 43 43 H 1.09008 * 117.49849 * 145.02290 * 25 14 13 44 44 H 1.08996 * 117.50169 * 252.50885 * 26 25 14 45 45 H 1.08998 * 117.49428 * 107.48736 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0554 0.0000 4 7 3.6111 0.6458 -0.0064 5 6 4.7775 1.5323 -0.0134 6 6 3.6459 -0.6971 -0.0045 7 17 5.0708 -1.6888 -0.0099 8 6 2.3372 -1.1438 0.0035 9 6 1.8922 -2.5480 0.0077 10 8 1.7140 -3.1263 1.0627 11 7 1.6770 -3.1902 -1.1575 12 6 1.2285 -4.5849 -1.1533 13 6 1.0619 -5.0714 -2.5942 14 6 0.7036 -6.5588 -2.5922 15 6 1.8799 -7.5207 -2.4130 16 7 2.7775 -7.4145 -3.5659 17 6 3.9637 -8.0986 -3.5754 18 1 4.2376 -8.7161 -2.7327 19 6 4.8140 -7.9984 -4.6679 20 7 4.4803 -7.2454 -5.6947 21 14 6.4325 -8.9310 -4.6806 22 1 6.1654 -10.3874 -4.5662 23 1 7.1516 -8.6574 -5.9507 24 1 7.2672 -8.4894 -3.5345 25 6 -0.4471 -7.0095 -3.4941 26 6 -0.6382 -6.9614 -1.9769 27 1 -0.3634 0.0027 1.0276 28 1 -0.3633 0.8886 -0.5163 29 1 -0.3633 -0.8914 -0.5115 30 1 5.0617 1.7505 -1.0428 31 1 4.5308 2.4615 0.5001 32 1 5.6078 1.0443 0.4970 33 1 1.8191 -2.7289 -1.9989 34 1 1.9683 -5.2029 -0.6447 35 1 0.2739 -4.6579 -0.6322 36 1 0.2655 -4.5064 -3.0788 37 1 1.9950 -4.9232 -3.1379 38 1 2.4239 -7.2640 -1.5040 39 1 1.5059 -8.5416 -2.3365 40 1 2.5315 -6.8596 -4.3225 41 1 5.0747 -7.1751 -6.4580 42 1 -0.9486 -6.2464 -4.0893 43 1 -0.3663 -7.9916 -3.9603 44 1 -0.6831 -7.9116 -1.4449 45 1 -1.2656 -6.1665 -1.5737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166474805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = 41.904529 kcal Electronic energy + Delta-G solvation = -26893.169805 eV Core-core repulsion = 22973.360390 eV Total energy + Delta-G solvation = -3919.809415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63268 -40.47306 -39.42420 -38.20066 -36.07966 -35.67898 -35.19366 -32.75667 -32.07197 -30.88980 -30.29366 -27.82214 -27.04963 -24.90538 -24.57602 -23.42760 -22.74447 -21.80134 -21.13342 -19.97984 -19.10399 -18.71020 -17.56217 -17.19306 -16.86947 -16.75001 -16.58335 -16.16285 -15.86151 -15.39017 -15.12760 -14.95409 -14.66848 -14.50352 -14.35257 -14.05419 -13.79378 -13.74781 -13.63343 -13.27575 -13.15211 -12.98409 -12.91682 -12.80960 -12.75925 -12.54377 -12.24899 -12.16614 -11.99709 -11.90255 -11.80029 -11.18127 -11.04411 -10.86365 -10.53353 -10.40881 -10.11414 -9.85305 -8.95069 -7.93118 -5.20205 0.11016 0.22173 1.13548 1.40451 1.42608 1.46373 1.48682 1.54795 2.23644 2.55371 2.93962 3.22042 3.39688 3.68141 3.82646 3.87736 3.94108 4.03161 4.11988 4.15894 4.19555 4.27415 4.30662 4.46491 4.53285 4.55181 4.69320 4.70897 4.75208 4.87779 4.88790 4.97743 5.01036 5.12493 5.21258 5.26024 5.31488 5.38647 5.41670 5.43403 5.45001 5.50424 6.25628 6.29276 6.47154 7.13995 7.36560 8.13402 8.39347 9.29831 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.003105 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.750985 B = 9014.812960 C =11047.241491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.118 3.882 3 N -0.285 5.285 4 N -0.348 5.348 5 C 0.080 3.920 6 C 0.153 3.847 7 Cl 0.018 6.982 8 C -0.282 4.282 9 C 0.601 3.399 10 O -0.570 6.570 11 N -0.705 5.705 12 C 0.134 3.866 13 C -0.077 4.077 14 C -0.139 4.139 15 C 0.188 3.812 16 N -0.735 5.735 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.967 3.033 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.281 1.281 25 C -0.164 4.164 26 C -0.149 4.149 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.411 0.589 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.012 0.988 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 19.481 10.582 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.109 5.109 4 N -0.130 5.130 5 C -0.059 4.059 6 C -0.006 4.006 7 Cl 0.046 6.954 8 C -0.298 4.298 9 C 0.386 3.614 10 O -0.449 6.449 11 N -0.356 5.356 12 C 0.010 3.990 13 C -0.115 4.115 14 C -0.140 4.140 15 C 0.061 3.939 16 N -0.377 5.377 17 C -0.378 4.378 18 H 0.087 0.913 19 C -0.262 4.262 20 N -0.615 5.615 21 Si 0.797 3.203 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.201 4.201 26 C -0.186 4.186 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.247 0.753 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.348 20.230 11.394 24.353 hybrid contribution 1.671 -1.352 -0.832 2.305 sum -5.677 18.878 10.563 22.364 Atomic orbital electron populations 1.20436 0.83321 1.05094 1.04688 1.22728 0.98427 0.87457 0.96158 1.77233 0.85316 1.21733 1.26640 1.48718 1.07317 1.02509 1.54411 1.22500 0.82757 0.94630 1.06015 1.22082 0.89995 0.85055 1.03441 1.98472 1.35037 1.65350 1.96561 1.19802 0.91257 0.94868 1.23910 1.17240 0.76162 0.84467 0.83520 1.90774 1.53015 1.68585 1.32512 1.45962 1.67408 1.13712 1.08480 1.21261 0.99821 0.80309 0.97579 1.21103 1.02525 0.92851 0.94994 1.21394 0.90015 0.94731 1.07906 1.20236 0.89260 0.94834 0.89545 1.42415 1.19572 1.56714 1.19009 1.19561 0.96184 1.20765 1.01333 0.91329 1.25450 1.02182 1.01928 0.96658 1.69797 1.38855 1.44705 1.08133 0.85307 0.80034 0.78527 0.76472 1.20577 1.21887 1.20751 1.23005 1.00754 1.02649 0.93736 1.23067 0.96775 1.03557 0.95224 0.88933 0.88174 0.89490 0.88009 0.86545 0.87757 0.75296 0.93747 0.90147 0.88983 0.92472 0.96515 0.97039 0.79079 0.94034 0.87303 0.90321 0.88669 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.28 71.23 0.73 -0.42 16 2 C 0.12 2.60 7.26 43.53 0.32 2.91 16 3 N -0.29 -6.29 12.49 -46.66 -0.58 -6.88 16 4 N -0.35 -6.98 3.98 -357.40 -1.42 -8.40 16 5 C 0.08 0.84 11.28 127.77 1.44 2.28 16 6 C 0.15 3.66 7.54 84.32 0.64 4.29 16 7 Cl 0.02 0.42 28.56 -2.72 -0.08 0.34 16 8 C -0.28 -7.27 5.88 -20.12 -0.12 -7.39 16 9 C 0.60 17.58 7.20 86.63 0.62 18.20 16 10 O -0.57 -20.90 17.11 -4.10 -0.07 -20.97 16 11 N -0.71 -18.10 5.55 -466.50 -2.59 -20.69 16 12 C 0.13 3.66 5.51 86.38 0.48 4.14 16 13 C -0.08 -2.13 5.24 30.59 0.16 -1.97 16 14 C -0.14 -4.27 1.52 -52.18 -0.08 -4.35 16 15 C 0.19 7.67 6.10 86.38 0.53 8.19 16 16 N -0.73 -37.35 5.30 -343.45 -1.82 -39.17 16 17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.96 -58.52 13.06 21.65 0.28 -58.24 16 21 Si 0.97 46.54 29.55 68.60 2.03 48.56 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 C -0.16 -4.46 9.90 30.59 0.30 -4.16 16 26 C -0.15 -3.52 9.57 30.59 0.29 -3.23 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.11 8.14 -2.38 -0.02 1.10 16 29 H 0.09 1.21 8.01 -2.38 -0.02 1.19 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.86 7.77 -2.39 -0.02 0.84 16 33 H 0.41 9.01 8.46 -92.71 -0.78 8.22 16 34 H 0.04 1.49 7.69 -2.39 -0.02 1.47 16 35 H 0.08 2.01 7.80 -2.39 -0.02 1.99 16 36 H 0.09 2.02 7.94 -2.38 -0.02 2.00 16 37 H 0.06 1.95 7.64 -2.39 -0.02 1.93 16 38 H 0.02 0.72 7.69 -2.39 -0.02 0.70 16 39 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 40 H 0.38 20.12 7.46 -92.71 -0.69 19.43 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.11 2.52 8.08 -2.39 -0.02 2.50 16 43 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.12 2.19 7.98 -2.39 -0.02 2.18 16 Total: -1.00 -74.41 399.28 1.91 -72.50 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.45 Total: 31.12 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.62 Total: 1.82 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -6.13 Total: -133.38 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.07 Total: -20.97 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -74.41 1.91 -72.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166474805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.404 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds