Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48500 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 300.00027 * 3 2 1 6 6 H 1.48501 * 109.47076 * 59.99787 * 3 2 1 7 7 C 1.38806 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00534 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00520 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47424 * 175.59127 * 10 9 7 12 12 C 1.53002 * 115.54848 * 303.89446 * 11 10 9 13 13 C 1.52997 * 109.47512 * 278.03622 * 12 11 10 14 14 N 1.46497 * 109.47043 * 175.02494 * 13 12 11 15 15 C 1.34777 * 119.99951 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00365 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47346 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47278 * 179.97438 * 18 17 15 20 20 C 1.35051 * 126.03636 * 124.99939 * 19 18 17 21 21 C 1.35372 * 107.72531 * 179.97438 * 20 19 18 22 22 Cl 1.73603 * 126.04251 * 179.97438 * 21 20 19 23 23 C 1.39932 * 107.91124 * 359.97438 * 21 20 19 24 24 N 1.30848 * 108.20971 * 359.76117 * 23 21 20 25 25 C 1.52999 * 117.51885 * 89.59722 * 11 10 9 26 26 C 1.52996 * 117.50111 * 158.22993 * 11 10 9 27 27 H 0.97001 * 119.99913 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99924 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47446 * 55.59090 * 10 9 7 30 30 H 1.08996 * 109.47176 * 295.59008 * 10 9 7 31 31 H 1.09000 * 109.47088 * 158.03262 * 12 11 10 32 32 H 1.08998 * 109.46924 * 38.03653 * 12 11 10 33 33 H 1.08996 * 109.47500 * 55.02017 * 13 12 11 34 34 H 1.09009 * 109.46548 * 295.02245 * 13 12 11 35 35 H 0.97000 * 120.00569 * 359.97438 * 14 13 12 36 36 H 1.09006 * 109.46988 * 59.99901 * 17 15 14 37 37 H 1.08995 * 109.47086 * 300.00403 * 17 15 14 38 38 H 1.08995 * 109.47551 * 300.00356 * 18 17 15 39 39 H 1.09004 * 109.46743 * 60.00622 * 18 17 15 40 40 H 1.07996 * 126.13168 * 359.94871 * 20 19 18 41 41 H 1.07996 * 125.88856 * 180.02562 * 23 21 20 42 42 H 1.08998 * 117.49558 * 214.97136 * 25 11 10 43 43 H 1.09002 * 117.49971 * 359.97438 * 25 11 10 44 44 H 1.09003 * 117.49653 * 359.97438 * 26 11 10 45 45 H 1.08997 * 117.50223 * 144.99425 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0676 -4.8176 0.1103 12 6 0.1323 -4.7736 1.3203 13 6 0.8593 -5.3269 2.5475 14 7 0.0072 -5.1755 3.7295 15 6 0.4433 -5.5967 4.9331 16 8 1.5416 -6.1007 5.0378 17 6 -0.4330 -5.4405 6.1491 18 6 0.2936 -5.9951 7.3761 19 7 -0.5581 -5.8427 8.5583 20 6 -0.9324 -6.8299 9.4004 21 6 -1.7132 -6.2794 10.3596 22 17 -2.4525 -7.1238 11.6840 23 6 -1.8188 -4.9094 10.0947 24 7 -1.1225 -4.6461 9.0187 25 6 0.5124 -5.3999 -1.1910 26 6 1.5336 -6.1925 -0.3726 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.7428 -3.6811 0.8473 30 1 2.6242 -3.7494 -0.9274 31 1 -0.7518 -5.3784 1.1184 32 1 -0.1682 -3.7431 1.5100 33 1 1.7891 -4.7781 2.6972 34 1 1.0816 -6.3828 2.3926 35 1 -0.8710 -4.7721 3.6459 36 1 -1.3632 -5.9887 5.9995 37 1 -0.6545 -4.3846 6.3041 38 1 0.5148 -7.0510 7.2209 39 1 1.2239 -5.4471 7.5259 40 1 -0.6584 -7.8716 9.3223 41 1 -2.3753 -4.1925 10.6802 42 1 -0.5192 -5.7516 -1.1851 43 1 0.8524 -4.9557 -2.1266 44 1 2.5458 -6.2699 -0.7697 45 1 1.1739 -7.0657 0.1716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168302488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = 63.448343 kcal Electronic energy + Delta-G solvation = -25825.685400 eV Core-core repulsion = 21906.810195 eV Total energy + Delta-G solvation = -3918.875205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66709 -39.88437 -38.33426 -36.78549 -35.06687 -34.52449 -33.96838 -31.26318 -30.81590 -30.27711 -29.27754 -26.06653 -25.16921 -23.21180 -22.74428 -21.87582 -21.61865 -21.27379 -20.49729 -18.60265 -17.99420 -17.13339 -16.80593 -16.34664 -16.09925 -15.47729 -15.27640 -14.92958 -14.66423 -14.55679 -14.41305 -13.87700 -13.67237 -13.54145 -13.24506 -13.05979 -12.86166 -12.69480 -12.37531 -12.11734 -11.93321 -11.83516 -11.65487 -11.46968 -11.17676 -10.96940 -10.87010 -10.83527 -10.64975 -10.17360 -10.08088 -9.95123 -9.92391 -9.67881 -9.37133 -9.09891 -8.87028 -8.81924 -6.92698 -5.78809 -3.06596 1.32364 1.54790 2.20297 2.37904 2.46702 3.08728 3.42045 3.48206 3.50039 4.00785 4.09460 4.27981 4.35841 4.52982 4.59162 4.68848 4.89415 4.97895 5.01028 5.05771 5.11373 5.17290 5.27321 5.31925 5.41593 5.49608 5.57097 5.63860 5.70758 5.86295 5.95806 6.11933 6.13602 6.16274 6.36930 6.39027 6.39339 6.41266 6.55368 6.72875 6.80163 7.13473 7.37211 7.69296 8.05718 8.40497 9.52226 10.09919 10.45438 11.44123 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.001898 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.067273 B =14752.260984 C =16489.457405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.188 3.812 11 C -0.119 4.119 12 C -0.093 4.093 13 C 0.125 3.875 14 N -0.722 5.722 15 C 0.518 3.482 16 O -0.546 6.546 17 C -0.155 4.155 18 C 0.151 3.849 19 N -0.362 5.362 20 C 0.076 3.924 21 C -0.192 4.192 22 Cl -0.045 7.045 23 C 0.064 3.936 24 N -0.277 5.277 25 C -0.166 4.166 26 C -0.178 4.178 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.026 0.974 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.403 0.597 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -18.210 16.771 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.131 4.131 13 C 0.002 3.998 14 N -0.373 5.373 15 C 0.303 3.697 16 O -0.424 6.424 17 C -0.196 4.196 18 C 0.030 3.970 19 N -0.144 5.144 20 C -0.073 4.073 21 C -0.230 4.230 22 Cl -0.017 7.017 23 C -0.123 4.123 24 N -0.098 5.098 25 C -0.203 4.203 26 C -0.215 4.215 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.201 0.799 41 H 0.208 0.792 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.256 -17.627 15.982 24.171 hybrid contribution -0.689 0.469 0.565 1.007 sum -4.945 -17.158 16.547 24.344 Atomic orbital electron populations 1.69666 1.05056 1.25482 1.58023 1.24719 0.95539 0.97639 1.03128 0.86131 0.78830 0.84159 0.77172 1.20576 1.21896 1.21882 1.19277 0.91074 0.84147 1.42338 0.91197 1.42308 1.05869 0.99672 1.89340 1.20176 0.91873 0.84191 0.97753 1.21570 1.00899 0.94902 0.94601 1.21272 0.96720 1.03038 0.92032 1.21384 0.94282 1.00925 0.83173 1.46026 1.21059 1.62299 1.07884 1.20209 0.87082 0.78064 0.84304 1.90731 1.21394 1.44433 1.85857 1.21889 0.99790 1.05613 0.92305 1.21548 0.91789 1.04000 0.79633 1.48628 1.39096 1.05009 1.21700 1.22305 0.97752 0.95886 0.91322 1.20792 1.10676 0.93432 0.98125 1.98331 1.81427 1.77066 1.44899 1.23924 0.98747 0.94457 0.95194 1.77539 1.14005 1.04806 1.13482 1.22998 0.98227 1.03452 0.95649 1.22964 0.99696 0.94433 1.04429 0.93619 0.78161 0.95665 0.96442 0.91991 0.89135 0.90788 0.91731 0.76276 0.88241 0.87031 0.87300 0.88132 0.79921 0.79159 0.89315 0.88662 0.88918 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -17.89 5.23 -59.91 -0.31 -18.20 16 10 C 0.19 3.72 6.15 -4.04 -0.02 3.69 16 11 C -0.12 -1.83 1.65 -154.51 -0.25 -2.08 16 12 C -0.09 -1.30 5.20 -26.73 -0.14 -1.43 16 13 C 0.13 1.67 5.49 -4.04 -0.02 1.65 16 14 N -0.72 -8.19 5.56 -60.30 -0.33 -8.53 16 15 C 0.52 5.99 7.83 -10.99 -0.09 5.90 16 16 O -0.55 -8.14 15.98 5.55 0.09 -8.05 16 17 C -0.16 -1.30 5.89 -27.88 -0.16 -1.46 16 18 C 0.15 1.22 5.80 -4.04 -0.02 1.20 16 19 N -0.36 -3.21 3.68 -61.33 -0.23 -3.44 16 20 C 0.08 0.57 11.43 -17.16 -0.20 0.37 16 21 C -0.19 -1.59 6.65 -39.97 -0.27 -1.85 16 22 Cl -0.05 -0.34 29.30 -51.86 -1.52 -1.86 16 23 C 0.06 0.56 12.02 -17.34 -0.21 0.35 16 24 N -0.28 -2.92 12.42 30.64 0.38 -2.54 16 25 C -0.17 -2.32 9.87 -26.73 -0.26 -2.59 16 26 C -0.18 -2.26 9.57 -26.73 -0.26 -2.52 16 27 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.38 9.85 6.80 -40.82 -0.28 9.57 16 29 H 0.03 0.52 7.96 -51.93 -0.41 0.10 16 30 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 32 H 0.09 1.51 6.94 -51.93 -0.36 1.15 16 33 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 34 H 0.06 0.83 7.72 -51.92 -0.40 0.43 16 35 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.11 0.70 8.03 -51.93 -0.42 0.29 16 39 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.09 1.11 8.07 -51.93 -0.42 0.70 16 43 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.00 7.90 -51.93 -0.41 0.59 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -33.26 397.94 -9.17 -42.43 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.79 Total: 9.85 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.15 Total: -6.01 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.23 Total: -59.71 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.52 Total: -1.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.26 -9.17 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168302488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.875 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds