Wall clock time and date at job start Sat Apr 11 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48500 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 300.00027 * 3 2 1 6 6 H 1.48501 * 109.47076 * 59.99787 * 3 2 1 7 7 C 1.38806 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00022 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00534 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00520 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47424 * 175.59127 * 10 9 7 12 12 C 1.53002 * 115.54848 * 303.89446 * 11 10 9 13 13 C 1.52997 * 109.47512 * 278.03622 * 12 11 10 14 14 N 1.46497 * 109.47043 * 175.02494 * 13 12 11 15 15 C 1.34777 * 119.99951 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00365 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47346 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47278 * 179.97438 * 18 17 15 20 20 C 1.35051 * 126.03636 * 124.99939 * 19 18 17 21 21 C 1.35372 * 107.72531 * 179.97438 * 20 19 18 22 22 Cl 1.73603 * 126.04251 * 179.97438 * 21 20 19 23 23 C 1.39932 * 107.91124 * 359.97438 * 21 20 19 24 24 N 1.30848 * 108.20971 * 359.76117 * 23 21 20 25 25 C 1.52999 * 117.51885 * 89.59722 * 11 10 9 26 26 C 1.52996 * 117.50111 * 158.22993 * 11 10 9 27 27 H 0.97001 * 119.99913 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99924 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47446 * 55.59090 * 10 9 7 30 30 H 1.08996 * 109.47176 * 295.59008 * 10 9 7 31 31 H 1.09000 * 109.47088 * 158.03262 * 12 11 10 32 32 H 1.08998 * 109.46924 * 38.03653 * 12 11 10 33 33 H 1.08996 * 109.47500 * 55.02017 * 13 12 11 34 34 H 1.09009 * 109.46548 * 295.02245 * 13 12 11 35 35 H 0.97000 * 120.00569 * 359.97438 * 14 13 12 36 36 H 1.09006 * 109.46988 * 59.99901 * 17 15 14 37 37 H 1.08995 * 109.47086 * 300.00403 * 17 15 14 38 38 H 1.08995 * 109.47551 * 300.00356 * 18 17 15 39 39 H 1.09004 * 109.46743 * 60.00622 * 18 17 15 40 40 H 1.07996 * 126.13168 * 359.94871 * 20 19 18 41 41 H 1.07996 * 125.88856 * 180.02562 * 23 21 20 42 42 H 1.08998 * 117.49558 * 214.97136 * 25 11 10 43 43 H 1.09002 * 117.49971 * 359.97438 * 25 11 10 44 44 H 1.09003 * 117.49653 * 359.97438 * 26 11 10 45 45 H 1.08997 * 117.50223 * 144.99425 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0676 -4.8176 0.1103 12 6 0.1323 -4.7736 1.3203 13 6 0.8593 -5.3269 2.5475 14 7 0.0072 -5.1755 3.7295 15 6 0.4433 -5.5967 4.9331 16 8 1.5416 -6.1007 5.0378 17 6 -0.4330 -5.4405 6.1491 18 6 0.2936 -5.9951 7.3761 19 7 -0.5581 -5.8427 8.5583 20 6 -0.9324 -6.8299 9.4004 21 6 -1.7132 -6.2794 10.3596 22 17 -2.4525 -7.1238 11.6840 23 6 -1.8188 -4.9094 10.0947 24 7 -1.1225 -4.6461 9.0187 25 6 0.5124 -5.3999 -1.1910 26 6 1.5336 -6.1925 -0.3726 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.7428 -3.6811 0.8473 30 1 2.6242 -3.7494 -0.9274 31 1 -0.7518 -5.3784 1.1184 32 1 -0.1682 -3.7431 1.5100 33 1 1.7891 -4.7781 2.6972 34 1 1.0816 -6.3828 2.3926 35 1 -0.8710 -4.7721 3.6459 36 1 -1.3632 -5.9887 5.9995 37 1 -0.6545 -4.3846 6.3041 38 1 0.5148 -7.0510 7.2209 39 1 1.2239 -5.4471 7.5259 40 1 -0.6584 -7.8716 9.3223 41 1 -2.3753 -4.1925 10.6802 42 1 -0.5192 -5.7516 -1.1851 43 1 0.8524 -4.9557 -2.1266 44 1 2.5458 -6.2699 -0.7697 45 1 1.1739 -7.0657 0.1716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168302488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:12 Heat of formation + Delta-G solvation = 42.102470 kcal Electronic energy + Delta-G solvation = -25826.611027 eV Core-core repulsion = 21906.810195 eV Total energy + Delta-G solvation = -3919.800832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29510 -40.85841 -39.54945 -37.37658 -36.16539 -35.77698 -35.27644 -32.80294 -32.03692 -31.10289 -30.08473 -27.83298 -26.01365 -24.63451 -24.22523 -22.97312 -22.23386 -22.02079 -21.36933 -19.93322 -19.07607 -18.68152 -17.64238 -17.20413 -17.08592 -16.72445 -16.36494 -16.18151 -15.66877 -15.59588 -15.33694 -15.19570 -14.89269 -14.48138 -14.43264 -14.21002 -14.00644 -13.89311 -13.49684 -13.16670 -13.01159 -12.83367 -12.76373 -12.54185 -12.46258 -12.27891 -12.26526 -12.09253 -11.94943 -11.84152 -11.45119 -11.14395 -11.06459 -10.91555 -10.62503 -10.53305 -10.11466 -9.43969 -8.97978 -7.96304 -5.23413 0.71822 0.94104 1.45361 1.45787 1.54164 1.55593 1.58021 1.75379 2.21145 2.53167 2.89917 3.37133 3.45937 3.59021 3.80275 3.82301 3.84237 3.89882 3.98467 4.03895 4.09416 4.25433 4.29755 4.38277 4.41684 4.48892 4.59519 4.65618 4.68596 4.77567 4.84291 4.94548 4.98385 5.07998 5.19141 5.27164 5.33976 5.35366 5.38573 5.42604 5.48616 5.80878 6.26661 6.46874 6.50680 7.15146 7.33863 8.10035 8.35659 9.27005 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.001898 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.067273 B =14752.260984 C =16489.457405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.141 4.141 12 C -0.080 4.080 13 C 0.135 3.865 14 N -0.719 5.719 15 C 0.518 3.482 16 O -0.581 6.581 17 C -0.141 4.141 18 C 0.153 3.847 19 N -0.367 5.367 20 C 0.083 3.917 21 C -0.205 4.205 22 Cl -0.041 7.041 23 C 0.061 3.939 24 N -0.315 5.315 25 C -0.165 4.165 26 C -0.150 4.150 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.214 0.786 41 H 0.208 0.792 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 -20.031 17.185 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.061 3.939 11 C -0.142 4.142 12 C -0.117 4.117 13 C 0.011 3.989 14 N -0.370 5.370 15 C 0.305 3.695 16 O -0.462 6.462 17 C -0.182 4.182 18 C 0.032 3.968 19 N -0.149 5.149 20 C -0.065 4.065 21 C -0.243 4.243 22 Cl -0.013 7.013 23 C -0.126 4.126 24 N -0.137 5.137 25 C -0.202 4.202 26 C -0.187 4.187 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.250 0.750 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.147 0.853 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.225 0.775 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.673 -19.463 16.393 25.873 hybrid contribution -0.518 0.978 0.447 1.193 sum -5.191 -18.485 16.840 25.539 Atomic orbital electron populations 1.69800 1.06312 1.25900 1.59500 1.25477 0.96430 1.00749 1.03816 0.85145 0.78163 0.80164 0.76732 1.19456 1.21905 1.22017 1.19626 0.91337 0.85558 1.41100 0.91234 1.42448 1.05676 1.00596 1.89085 1.20232 0.92685 0.84178 0.96809 1.21414 1.01431 0.95019 0.96355 1.21119 0.97356 1.01599 0.91668 1.21166 0.93174 1.00882 0.83675 1.45992 1.21315 1.62152 1.07515 1.20699 0.86840 0.77027 0.84903 1.90714 1.23000 1.46072 1.86366 1.21782 0.99918 1.05662 0.90793 1.21546 0.91005 1.04916 0.79333 1.48654 1.39253 1.04972 1.22017 1.22824 0.96523 0.96864 0.90299 1.20921 1.11311 0.93428 0.98684 1.98331 1.81397 1.76875 1.44699 1.24295 0.98196 0.95271 0.94796 1.77496 1.15394 1.06113 1.14670 1.23059 0.99732 1.03238 0.94192 1.23052 0.99694 0.93306 1.02652 0.94002 0.79000 0.96605 0.96898 0.89184 0.92368 0.94104 0.90555 0.75002 0.85936 0.87568 0.85343 0.89667 0.76916 0.77535 0.87351 0.90013 0.88559 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.24 13.06 21.65 0.28 -57.96 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -36.94 5.23 -343.46 -1.80 -38.73 16 10 C 0.19 7.53 6.15 86.38 0.53 8.06 16 11 C -0.14 -4.23 1.65 -52.18 -0.09 -4.31 16 12 C -0.08 -2.15 5.20 30.59 0.16 -1.99 16 13 C 0.13 3.49 5.49 86.38 0.47 3.97 16 14 N -0.72 -15.68 5.56 -463.06 -2.57 -18.25 16 15 C 0.52 11.55 7.83 87.66 0.69 12.23 16 16 O -0.58 -17.08 15.98 -3.05 -0.05 -17.12 16 17 C -0.14 -2.18 5.89 29.85 0.18 -2.00 16 18 C 0.15 2.30 5.80 86.38 0.50 2.80 16 19 N -0.37 -6.04 3.68 -347.93 -1.28 -7.32 16 20 C 0.08 1.08 11.43 83.54 0.95 2.04 16 21 C -0.20 -3.10 6.65 22.02 0.15 -2.95 16 22 Cl -0.04 -0.57 29.30 -2.72 -0.08 -0.65 16 23 C 0.06 1.02 12.02 85.25 1.02 2.04 16 24 N -0.32 -6.45 12.42 -56.98 -0.71 -7.16 16 25 C -0.17 -4.30 9.87 30.59 0.30 -4.00 16 26 C -0.15 -3.42 9.57 30.59 0.29 -3.13 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.38 19.84 6.80 -92.71 -0.63 19.21 16 29 H 0.02 0.67 7.96 -2.38 -0.02 0.65 16 30 H 0.01 0.54 8.10 -2.39 -0.02 0.52 16 31 H 0.09 1.93 7.93 -2.39 -0.02 1.91 16 32 H 0.06 1.97 6.94 -2.39 -0.02 1.95 16 33 H 0.04 1.33 7.96 -2.39 -0.02 1.31 16 34 H 0.08 1.81 7.72 -2.38 -0.02 1.79 16 35 H 0.41 7.22 8.47 -92.71 -0.79 6.43 16 36 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.13 1.41 8.03 -2.39 -0.02 1.39 16 39 H 0.09 1.55 8.10 -2.38 -0.02 1.53 16 40 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.21 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.11 2.40 8.07 -2.39 -0.02 2.38 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 45 H 0.12 2.10 7.90 -2.39 -0.02 2.08 16 Total: -1.00 -72.52 397.94 1.89 -70.62 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.40 Total: 31.89 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.47 Total: -3.83 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -6.07 Total: -129.42 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.05 Total: -17.12 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -72.52 1.89 -70.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168302488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.726 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds