Wall clock time and date at job start Sat Apr 11 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47323 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47173 * 30.00523 * 3 2 1 6 6 H 1.48505 * 109.47106 * 149.99884 * 3 2 1 7 7 C 1.38956 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99600 * 359.97438 * 7 2 1 9 9 N 1.37089 * 120.00171 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00031 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99868 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99895 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46893 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99937 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47452 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46983 * 179.97438 * 16 15 14 18 18 C 1.34780 * 119.99566 * 180.02562 * 17 16 15 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 16 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.33874 * 122.76372 * 269.70712 * 21 20 18 23 23 O 1.21223 * 125.39701 * 359.97438 * 22 21 20 24 24 C 1.51319 * 109.20556 * 179.84581 * 22 21 20 25 25 C 1.54227 * 103.55681 * 0.38362 * 24 22 21 26 26 C 1.33875 * 122.76205 * 90.00148 * 21 20 18 27 27 O 1.21230 * 125.39509 * 359.97386 * 26 21 20 28 28 H 0.97003 * 119.99410 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00174 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47261 * 59.99398 * 12 10 9 31 31 H 1.09005 * 109.46737 * 299.99149 * 12 10 9 32 32 H 1.00899 * 110.99749 * 303.94895 * 13 12 10 33 33 H 1.08998 * 109.47764 * 59.99419 * 14 13 12 34 34 H 1.09002 * 109.46774 * 299.99237 * 14 13 12 35 35 H 1.09001 * 109.46812 * 59.99568 * 15 14 13 36 36 H 1.09002 * 109.46935 * 299.99910 * 15 14 13 37 37 H 1.09001 * 109.46832 * 59.99801 * 16 15 14 38 38 H 1.09002 * 109.47153 * 299.99992 * 16 15 14 39 39 H 0.96995 * 120.00423 * 359.97438 * 17 16 15 40 40 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 41 41 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 42 42 H 1.09005 * 110.79549 * 241.78131 * 24 22 21 43 43 H 1.09000 * 110.55084 * 118.87747 * 24 22 21 44 44 H 1.08996 * 110.60810 * 241.26059 * 25 24 22 45 45 H 1.09000 * 110.60186 * 118.29412 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3708 0.0000 11 8 3.4470 -3.4211 0.0000 12 6 5.5606 -2.3709 0.0000 13 7 6.0501 -3.7558 0.0006 14 6 7.5186 -3.7951 0.0000 15 6 7.9899 -5.2508 0.0013 16 6 9.5193 -5.2917 0.0001 17 7 9.9705 -6.6855 0.0019 18 6 11.2885 -6.9671 0.0018 19 8 12.1011 -6.0667 -0.0004 20 6 11.7527 -8.4008 0.0031 21 7 13.2171 -8.4400 0.0020 22 6 13.9403 -8.4665 -1.1242 23 8 13.4885 -8.4619 -2.2491 24 6 15.4113 -8.4997 -0.7706 25 6 15.4125 -8.4978 0.7716 26 6 13.9422 -8.4581 1.1273 27 8 13.4922 -8.4442 2.2529 28 1 -0.4849 0.8401 0.0004 29 1 3.8648 -0.3635 0.0004 30 1 5.9240 -1.8570 0.8899 31 1 5.9239 -1.8571 -0.8901 32 1 5.6746 -4.2717 0.7823 33 1 7.8960 -3.2906 0.8894 34 1 7.8951 -3.2918 -0.8905 35 1 7.6125 -5.7556 -0.8879 36 1 7.6134 -5.7538 0.8920 37 1 9.8970 -4.7867 0.8891 38 1 9.8955 -4.7888 -0.8908 39 1 9.3207 -7.4056 0.0041 40 1 11.3761 -8.9038 0.8938 41 1 11.3754 -8.9058 -0.8862 42 1 15.9219 -7.6170 -1.1557 43 1 15.8764 -9.4081 -1.1535 44 1 15.9236 -7.6142 1.1538 45 1 15.8757 -9.4065 1.1560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175667420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:20 Heat of formation + Delta-G solvation = -128.253774 kcal Electronic energy + Delta-G solvation = -27745.180527 eV Core-core repulsion = 23377.283330 eV Total energy + Delta-G solvation = -4367.897198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49259 -39.90315 -39.08897 -38.52282 -36.74275 -36.32411 -35.03192 -34.07861 -33.90989 -31.80614 -31.53730 -28.86698 -27.06123 -26.75603 -24.77366 -23.16780 -22.96018 -21.85020 -21.39480 -19.98949 -19.38138 -18.41577 -18.17533 -17.95879 -17.05696 -16.87162 -16.50824 -16.25708 -15.84406 -15.60861 -15.16742 -14.98105 -14.73661 -14.65148 -14.62210 -14.44913 -14.20720 -13.89871 -13.59291 -13.37288 -13.33545 -13.05077 -12.70263 -12.38432 -12.16841 -11.98375 -11.95737 -11.76101 -11.57377 -11.25094 -11.20823 -11.05486 -11.00219 -10.60404 -10.60144 -10.05289 -9.98255 -9.58286 -9.51701 -8.61957 -8.21711 -8.16855 -6.31995 -3.83456 0.98740 1.72190 2.10577 2.13971 2.78358 3.02043 3.06715 3.14745 3.47943 3.61630 3.72684 3.82089 4.02272 4.09896 4.14681 4.27178 4.40545 4.56322 4.69605 4.72413 4.78171 4.84279 4.94445 4.98357 4.99788 5.02294 5.20975 5.31068 5.39745 5.51658 5.61007 5.78661 5.84182 5.90703 5.94201 6.02401 6.18983 6.74628 6.95221 7.03989 7.19567 7.52705 7.57388 7.69118 8.13463 8.58804 8.93966 9.41481 9.81519 10.81103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.001348 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.601336 B =20771.887579 C =20848.368881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.063 3.937 15 C -0.130 4.130 16 C 0.121 3.879 17 N -0.723 5.723 18 C 0.502 3.498 19 O -0.532 6.532 20 C 0.078 3.922 21 N -0.560 5.560 22 C 0.531 3.469 23 O -0.478 6.478 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.531 3.469 27 O -0.479 6.479 28 H 0.273 0.727 29 H 0.371 0.629 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.351 0.649 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.405 0.595 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.159 -17.424 0.876 38.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.168 4.168 16 C -0.002 4.002 17 N -0.375 5.375 18 C 0.286 3.714 19 O -0.408 6.408 20 C -0.047 4.047 21 N -0.303 5.303 22 C 0.321 3.679 23 O -0.349 6.349 24 C -0.194 4.194 25 C -0.194 4.194 26 C 0.321 3.679 27 O -0.350 6.350 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.239 0.761 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 33.550 -17.404 0.194 37.797 hybrid contribution 0.242 1.479 0.913 1.755 sum 33.792 -15.925 1.108 37.373 Atomic orbital electron populations 1.69623 1.05651 1.27508 1.49306 1.25038 0.95492 0.97979 0.97602 0.86665 0.79741 0.84009 0.78925 1.19575 1.20174 1.19539 1.19438 0.79250 0.96655 1.48143 0.86276 1.42206 1.07546 1.06170 1.67039 1.19705 0.88188 0.84568 0.84028 1.90561 1.69437 1.30955 1.53774 1.21705 0.95053 0.90347 1.01379 1.60030 1.05825 1.12882 1.51450 1.21824 0.88678 0.95386 1.00855 1.21749 0.93002 0.98154 1.03879 1.21362 0.94572 0.81604 1.02703 1.45884 1.06694 1.09644 1.75290 1.20689 0.82950 0.91238 0.76499 1.90732 1.53338 1.47835 1.48901 1.21571 0.79927 0.95897 1.07345 1.46322 1.07772 1.66139 1.10035 1.20856 0.90196 0.73347 0.83544 1.90801 1.77701 1.45196 1.21218 1.22456 0.93492 1.07460 0.95957 1.22458 0.93505 1.07425 0.95963 1.20863 0.90190 0.73329 0.83560 1.90801 1.77790 1.45236 1.21168 0.91602 0.79664 0.93694 0.89397 0.82982 0.95192 0.90720 0.89920 0.91063 0.91305 0.91053 0.76089 0.85656 0.85612 0.85851 0.85963 0.85874 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.10 5.09 -10.96 -0.06 -14.15 16 10 C 0.45 10.20 7.82 -10.98 -0.09 10.12 16 11 O -0.57 -15.18 15.78 5.55 0.09 -15.09 16 12 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 13 N -0.67 -10.00 6.13 -115.06 -0.70 -10.71 16 14 C 0.06 0.68 5.69 -3.82 -0.02 0.66 16 15 C -0.13 -1.12 5.59 -26.73 -0.15 -1.27 16 16 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 17 N -0.72 -5.48 5.56 -60.30 -0.33 -5.82 16 18 C 0.50 4.83 7.90 -10.98 -0.09 4.74 16 19 O -0.53 -7.27 16.43 5.56 0.09 -7.18 16 20 C 0.08 0.51 6.04 -5.19 -0.03 0.48 16 21 N -0.56 -4.03 2.04 -116.62 -0.24 -4.27 16 22 C 0.53 3.75 8.08 -11.08 -0.09 3.66 16 23 O -0.48 -5.06 17.47 5.61 0.10 -4.96 16 24 C -0.15 -0.36 7.03 -26.94 -0.19 -0.55 16 25 C -0.15 -0.35 7.03 -26.94 -0.19 -0.54 16 26 C 0.53 3.74 8.08 -11.09 -0.09 3.65 16 27 O -0.48 -5.04 17.48 5.60 0.10 -4.94 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.35 5.37 8.43 -39.29 -0.33 5.04 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.40 1.88 8.47 -40.82 -0.35 1.54 16 40 H 0.13 0.58 7.83 -51.93 -0.41 0.18 16 41 H 0.13 0.59 7.82 -51.93 -0.41 0.19 16 42 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.12 0.00 8.14 -51.93 -0.42 -0.43 16 44 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.12 -0.01 8.14 -51.93 -0.42 -0.43 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -40.26 390.85 -6.60 -46.86 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.35 Total: 9.74 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -1.23 Total: 14.94 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.56 Total: -59.94 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: 0.37 Total: -32.17 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.26 -6.60 -46.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175667420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.397 kcal (2) G-P(sol) polarization free energy of solvation -40.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds