Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47323 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47173 * 30.00523 * 3 2 1 6 6 H 1.48505 * 109.47106 * 149.99884 * 3 2 1 7 7 C 1.38956 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99600 * 359.97438 * 7 2 1 9 9 N 1.37089 * 120.00171 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00031 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99868 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99895 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46893 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99937 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47452 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46983 * 179.97438 * 16 15 14 18 18 C 1.34780 * 119.99566 * 180.02562 * 17 16 15 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 16 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.33874 * 122.76372 * 269.70712 * 21 20 18 23 23 O 1.21223 * 125.39701 * 359.97438 * 22 21 20 24 24 C 1.51319 * 109.20556 * 179.84581 * 22 21 20 25 25 C 1.54227 * 103.55681 * 0.38362 * 24 22 21 26 26 C 1.33875 * 122.76205 * 90.00148 * 21 20 18 27 27 O 1.21230 * 125.39509 * 359.97386 * 26 21 20 28 28 H 0.97003 * 119.99410 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00174 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47261 * 59.99398 * 12 10 9 31 31 H 1.09005 * 109.46737 * 299.99149 * 12 10 9 32 32 H 1.00899 * 110.99749 * 303.94895 * 13 12 10 33 33 H 1.08998 * 109.47764 * 59.99419 * 14 13 12 34 34 H 1.09002 * 109.46774 * 299.99237 * 14 13 12 35 35 H 1.09001 * 109.46812 * 59.99568 * 15 14 13 36 36 H 1.09002 * 109.46935 * 299.99910 * 15 14 13 37 37 H 1.09001 * 109.46832 * 59.99801 * 16 15 14 38 38 H 1.09002 * 109.47153 * 299.99992 * 16 15 14 39 39 H 0.96995 * 120.00423 * 359.97438 * 17 16 15 40 40 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 41 41 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 42 42 H 1.09005 * 110.79549 * 241.78131 * 24 22 21 43 43 H 1.09000 * 110.55084 * 118.87747 * 24 22 21 44 44 H 1.08996 * 110.60810 * 241.26059 * 25 24 22 45 45 H 1.09000 * 110.60186 * 118.29412 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3708 0.0000 11 8 3.4470 -3.4211 0.0000 12 6 5.5606 -2.3709 0.0000 13 7 6.0501 -3.7558 0.0006 14 6 7.5186 -3.7951 0.0000 15 6 7.9899 -5.2508 0.0013 16 6 9.5193 -5.2917 0.0001 17 7 9.9705 -6.6855 0.0019 18 6 11.2885 -6.9671 0.0018 19 8 12.1011 -6.0667 -0.0004 20 6 11.7527 -8.4008 0.0031 21 7 13.2171 -8.4400 0.0020 22 6 13.9403 -8.4665 -1.1242 23 8 13.4885 -8.4619 -2.2491 24 6 15.4113 -8.4997 -0.7706 25 6 15.4125 -8.4978 0.7716 26 6 13.9422 -8.4581 1.1273 27 8 13.4922 -8.4442 2.2529 28 1 -0.4849 0.8401 0.0004 29 1 3.8648 -0.3635 0.0004 30 1 5.9240 -1.8570 0.8899 31 1 5.9239 -1.8571 -0.8901 32 1 5.6746 -4.2717 0.7823 33 1 7.8960 -3.2906 0.8894 34 1 7.8951 -3.2918 -0.8905 35 1 7.6125 -5.7556 -0.8879 36 1 7.6134 -5.7538 0.8920 37 1 9.8970 -4.7867 0.8891 38 1 9.8955 -4.7888 -0.8908 39 1 9.3207 -7.4056 0.0041 40 1 11.3761 -8.9038 0.8938 41 1 11.3754 -8.9058 -0.8862 42 1 15.9219 -7.6170 -1.1557 43 1 15.8764 -9.4081 -1.1535 44 1 15.9236 -7.6142 1.1538 45 1 15.8757 -9.4065 1.1560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175667420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -163.625206 kcal Electronic energy + Delta-G solvation = -27746.714348 eV Core-core repulsion = 23377.283330 eV Total energy + Delta-G solvation = -4369.431018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.98824 -40.65325 -40.31034 -39.69042 -37.72969 -36.94254 -36.18956 -35.72608 -34.46262 -33.76838 -32.56556 -29.59944 -28.32485 -27.12644 -26.26177 -24.42416 -23.35184 -22.64835 -22.09810 -21.29773 -20.54491 -20.24316 -18.85301 -18.52369 -17.85095 -17.58456 -17.40259 -17.28298 -16.84995 -16.79601 -16.53066 -15.75508 -15.74016 -15.68766 -15.30615 -15.27986 -14.95544 -14.91179 -14.77989 -14.48593 -14.32241 -14.19934 -13.61143 -13.54935 -13.37598 -13.16716 -12.90043 -12.75315 -12.47407 -12.41834 -12.11689 -11.98606 -11.88950 -11.82060 -11.68371 -11.52573 -11.14387 -10.75362 -10.45976 -10.26083 -10.25431 -9.35878 -8.42437 -6.03494 0.48068 1.24304 1.29748 1.35200 1.37408 1.43954 1.67392 1.93929 2.15522 2.22232 2.73166 3.13893 3.19767 3.25480 3.38528 3.56266 3.62329 3.93900 3.98222 4.08053 4.08767 4.13011 4.17121 4.19392 4.27799 4.41869 4.52770 4.53651 4.65995 4.73802 4.76465 4.89867 4.92070 5.10291 5.15670 5.31078 5.51411 5.71904 5.88684 6.02092 6.26164 6.31249 6.37842 6.58469 6.68338 6.86633 7.01629 7.38326 7.94621 8.75168 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.001348 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.601336 B =20771.887579 C =20848.368881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.688 5.688 14 C 0.064 3.936 15 C -0.117 4.117 16 C 0.128 3.872 17 N -0.712 5.712 18 C 0.496 3.504 19 O -0.578 6.578 20 C 0.074 3.926 21 N -0.567 5.567 22 C 0.523 3.477 23 O -0.522 6.522 24 C -0.141 4.141 25 C -0.141 4.141 26 C 0.523 3.477 27 O -0.522 6.522 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.346 0.654 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.419 0.581 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.154 0.846 44 H 0.137 0.863 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.060 -16.545 1.027 41.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.074 0.926 9 N -0.232 5.232 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.320 5.320 14 C -0.065 4.065 15 C -0.155 4.155 16 C 0.004 3.996 17 N -0.365 5.365 18 C 0.282 3.718 19 O -0.458 6.458 20 C -0.051 4.051 21 N -0.309 5.309 22 C 0.315 3.685 23 O -0.396 6.396 24 C -0.180 4.180 25 C -0.180 4.180 26 C 0.315 3.685 27 O -0.396 6.396 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.171 0.829 44 H 0.155 0.845 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 37.474 -16.560 0.344 40.971 hybrid contribution -1.053 1.065 0.860 1.727 sum 36.420 -15.494 1.204 39.598 Atomic orbital electron populations 1.69805 1.08147 1.29268 1.50193 1.26111 0.96457 1.02687 0.95980 0.85362 0.79478 0.76722 0.79937 1.18192 1.19987 1.15468 1.19025 0.81540 0.94977 1.50504 0.92642 1.42036 1.05824 1.07641 1.67730 1.21002 0.91030 0.83304 0.81132 1.90538 1.71412 1.32791 1.55168 1.21633 0.89479 0.91960 1.04037 1.60032 1.08292 1.12069 1.51620 1.21896 0.86044 0.96806 1.01796 1.21602 0.92661 0.97100 1.04133 1.21214 0.94407 0.82061 1.01959 1.45820 1.06645 1.09860 1.74179 1.21246 0.83003 0.92081 0.75509 1.90699 1.54520 1.49331 1.51216 1.21711 0.80456 0.94030 1.08910 1.46586 1.08056 1.65692 1.10562 1.21736 0.92173 0.71846 0.82739 1.90774 1.78825 1.47323 1.22698 1.22587 0.90009 1.09577 0.95869 1.22590 0.90032 1.09544 0.95843 1.21741 0.92156 0.71836 0.82755 1.90773 1.78904 1.47337 1.22629 0.91119 0.77442 0.90521 0.86815 0.83551 0.93811 0.90064 0.90184 0.90316 0.91959 0.91950 0.74325 0.83965 0.84001 0.84490 0.82854 0.84512 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.96 21.66 0.30 -56.12 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.97 38.82 27.74 68.60 1.90 40.72 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 7 C -0.33 -19.51 10.16 84.04 0.85 -18.65 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 9 N -0.59 -27.91 5.09 -306.98 -1.56 -29.47 16 10 C 0.45 20.17 7.82 87.66 0.69 20.86 16 11 O -0.61 -34.07 15.78 -3.06 -0.05 -34.12 16 12 C 0.06 1.84 6.17 85.56 0.53 2.37 16 13 N -0.69 -19.29 6.13 -517.94 -3.17 -22.46 16 14 C 0.06 1.22 5.69 86.31 0.49 1.72 16 15 C -0.12 -1.83 5.59 30.60 0.17 -1.66 16 16 C 0.13 2.09 5.67 86.38 0.49 2.58 16 17 N -0.71 -10.30 5.56 -463.06 -2.57 -12.87 16 18 C 0.50 9.48 7.90 87.66 0.69 10.18 16 19 O -0.58 -16.02 16.43 -3.03 -0.05 -16.07 16 20 C 0.07 0.94 6.04 85.63 0.52 1.45 16 21 N -0.57 -7.81 2.04 -760.72 -1.55 -9.36 16 22 C 0.52 6.89 8.08 87.99 0.71 7.60 16 23 O -0.52 -10.98 17.47 -2.85 -0.05 -11.03 16 24 C -0.14 -0.26 7.03 30.46 0.21 -0.05 16 25 C -0.14 -0.25 7.03 30.46 0.21 -0.04 16 26 C 0.52 6.85 8.08 87.99 0.71 7.56 16 27 O -0.52 -10.90 17.48 -2.88 -0.05 -10.95 16 28 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.39 15.20 5.76 -92.70 -0.53 14.66 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 32 H 0.35 10.24 8.43 -89.69 -0.76 9.49 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.42 3.44 8.47 -92.71 -0.79 2.65 16 40 H 0.14 1.25 7.83 -2.39 -0.02 1.23 16 41 H 0.14 1.27 7.82 -2.39 -0.02 1.25 16 42 H 0.14 -0.03 8.14 -2.38 -0.02 -0.04 16 43 H 0.15 -0.62 8.14 -2.39 -0.02 -0.63 16 44 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -95.45 390.85 -1.19 -96.64 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -1.08 Total: 31.46 kcal Atomic # 6 Polarization: 26.87 SS G_CDS: 6.74 Total: 33.62 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -8.56 Total: -130.27 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -0.20 Total: -72.16 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.72 kcal Total: -95.45 -1.19 -96.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175667420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.986 kcal (2) G-P(sol) polarization free energy of solvation -95.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds