Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46842 * 89.99957 * 3 2 1 5 5 H 1.48496 * 109.47069 * 329.99564 * 3 2 1 6 6 H 1.48498 * 109.46964 * 209.99426 * 3 2 1 7 7 C 1.38951 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00010 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99904 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00420 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47649 * 170.85413 * 12 10 9 14 14 C 1.47073 * 110.99814 * 290.18484 * 13 12 10 15 15 C 1.53067 * 109.38469 * 177.88729 * 14 13 12 16 16 O 1.43076 * 109.41072 * 56.53193 * 15 14 13 17 17 C 1.42899 * 113.57212 * 301.50214 * 16 15 14 18 18 H 1.08993 * 109.47641 * 299.09644 * 17 16 15 19 19 C 1.52997 * 109.88196 * 178.83030 * 17 16 15 20 20 C 1.53241 * 109.13728 * 178.44540 * 19 17 16 21 21 N 1.46892 * 108.94467 * 54.38319 * 20 19 17 22 22 C 1.34779 * 120.55897 * 126.89400 * 21 20 19 23 23 O 1.21350 * 119.99876 * 186.82598 * 22 21 20 24 24 C 1.49447 * 119.99953 * 6.81663 * 22 21 20 25 25 N 1.34774 * 120.00060 * 186.46420 * 24 22 21 26 26 O 1.21349 * 120.00197 * 6.47159 * 24 22 21 27 27 C 1.46995 * 118.88210 * 306.86370 * 21 20 19 28 28 C 1.46898 * 111.00070 * 166.75363 * 13 12 10 29 29 H 1.09002 * 109.53427 * 62.61940 * 28 13 12 30 30 H 0.97002 * 119.99535 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99878 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46899 * 290.85702 * 12 10 9 33 33 H 1.09007 * 109.47336 * 50.84807 * 12 10 9 34 34 H 1.08996 * 109.48527 * 297.85777 * 14 13 12 35 35 H 1.08998 * 109.48203 * 57.89677 * 14 13 12 36 36 H 1.08998 * 109.48157 * 176.51201 * 15 14 13 37 37 H 1.09005 * 109.48501 * 296.53724 * 15 14 13 38 38 H 1.08995 * 109.52569 * 298.34389 * 19 17 16 39 39 H 1.08997 * 109.52191 * 58.54885 * 19 17 16 40 40 H 1.09004 * 109.55515 * 174.22022 * 20 19 17 41 41 H 1.09001 * 109.56156 * 294.42890 * 20 19 17 42 42 H 0.97005 * 119.99459 * 0.02562 * 25 24 22 43 43 H 0.96999 * 120.00480 * 180.02562 * 25 24 22 44 44 H 1.08998 * 109.62087 * 173.21188 * 27 21 20 45 45 H 1.08995 * 109.62547 * 293.58754 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 1.4456 2.6526 -0.7001 6 1 3.5457 1.4402 -0.6999 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0030 12 6 1.2439 -4.8630 0.0010 13 7 2.1835 -5.9707 -0.2178 14 6 2.7031 -5.9572 -1.5936 15 6 3.7158 -7.0920 -1.7655 16 8 3.0960 -8.3372 -1.4301 17 6 2.5854 -8.3804 -0.0961 18 1 3.4027 -8.2376 0.6107 19 6 1.9181 -9.7327 0.1621 20 6 1.4116 -9.7752 1.6077 21 7 0.5434 -8.6139 1.8431 22 6 -0.7000 -8.7769 2.3371 23 8 -1.4524 -7.8277 2.4117 24 6 -1.1521 -10.1265 2.7927 25 7 -2.4334 -10.3181 3.1640 26 8 -0.3655 -11.0498 2.8286 27 6 1.0537 -7.2711 1.5315 28 6 1.5533 -7.2629 0.0839 29 1 0.7161 -7.4273 -0.5945 30 1 -0.4849 -0.8401 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.7443 -4.9945 0.9609 33 1 0.5012 -4.8535 -0.7968 34 1 1.8799 -6.0953 -2.2945 35 1 3.1904 -5.0019 -1.7888 36 1 4.0556 -7.1223 -2.8007 37 1 4.5682 -6.9213 -1.1079 38 1 1.0792 -9.8615 -0.5218 39 1 2.6426 -10.5320 0.0062 40 1 0.8456 -10.6927 1.7693 41 1 2.2591 -9.7440 2.2924 42 1 -3.0623 -9.5801 3.1351 43 1 -2.7269 -11.1940 3.4601 44 1 0.2539 -6.5397 1.6469 45 1 1.8742 -7.0257 2.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177080409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -111.896972 kcal Electronic energy + Delta-G solvation = -30903.890969 eV Core-core repulsion = 26536.703055 eV Total energy + Delta-G solvation = -4367.187913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38828 -40.14238 -38.68738 -38.24645 -36.90762 -35.66367 -34.23278 -34.11610 -32.30899 -31.12655 -30.84250 -29.07577 -27.05809 -25.46470 -24.48675 -24.09402 -22.65322 -21.91562 -20.58805 -20.11761 -19.55194 -18.32055 -17.90280 -17.57588 -17.07344 -16.52987 -16.27484 -16.13623 -15.90732 -15.69536 -15.13983 -14.87284 -14.80683 -14.50396 -14.20054 -13.92471 -13.85229 -13.80502 -13.62967 -13.26588 -13.02525 -12.59441 -12.41177 -12.24572 -11.84983 -11.63780 -11.28392 -11.22018 -11.20770 -11.00985 -10.84717 -10.46426 -10.36405 -10.22595 -9.87255 -9.67738 -9.56868 -9.52241 -9.10420 -8.57275 -8.11019 -8.02607 -6.75736 -3.89124 1.00651 2.01976 2.78589 3.21607 3.30433 3.34499 3.53549 3.63277 3.71255 3.82840 4.02728 4.27761 4.44749 4.62166 4.71865 4.83970 4.93324 5.01985 5.13546 5.16875 5.21720 5.25894 5.37629 5.46302 5.50754 5.55880 5.58600 5.67764 5.73477 5.74090 5.90295 5.93357 5.98650 6.06845 6.09711 6.22179 6.46689 6.84325 6.97223 7.01403 7.17042 7.36015 7.59169 7.80047 8.07489 8.59574 8.79428 9.46932 9.87222 10.67647 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.002977 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.559309 B = 9403.985591 C =11091.839394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.009 4.009 3 Si 1.093 2.907 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.576 5.576 10 C 0.447 3.553 11 O -0.570 6.570 12 C 0.039 3.961 13 N -0.503 5.503 14 C 0.022 3.978 15 C 0.067 3.933 16 O -0.383 6.383 17 C 0.098 3.902 18 H 0.071 0.929 19 C -0.125 4.125 20 C 0.067 3.933 21 N -0.577 5.577 22 C 0.505 3.495 23 O -0.517 6.517 24 C 0.519 3.481 25 N -0.819 5.819 26 O -0.513 6.513 27 C 0.112 3.888 28 C 0.043 3.957 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.375 0.625 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.149 0.851 41 H 0.076 0.924 42 H 0.416 0.584 43 H 0.412 0.588 44 H 0.102 0.898 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 -22.528 2.631 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.212 4.212 3 Si 0.920 3.080 4 H -0.211 1.211 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.511 4.511 8 H 0.117 0.883 9 N -0.214 5.214 10 C 0.232 3.768 11 O -0.453 6.453 12 C -0.092 4.092 13 N -0.228 5.228 14 C -0.105 4.105 15 C -0.009 4.009 16 O -0.302 6.302 17 C 0.040 3.960 18 H 0.089 0.911 19 C -0.164 4.164 20 C -0.054 4.054 21 N -0.311 5.311 22 C 0.287 3.713 23 O -0.393 6.393 24 C 0.299 3.701 25 N -0.384 5.384 26 O -0.390 6.390 27 C -0.010 4.010 28 C -0.067 4.067 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.208 0.792 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.247 0.753 43 H 0.244 0.756 44 H 0.120 0.880 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.921 -20.882 2.817 21.159 hybrid contribution -1.522 -1.413 -0.306 2.099 sum -3.443 -22.295 2.511 22.698 Atomic orbital electron populations 1.70870 1.06535 1.29449 1.47148 1.26507 0.96545 1.02636 0.95507 0.83095 0.74352 0.73433 0.77165 1.21093 1.20661 1.20945 1.20552 0.94645 0.83773 1.52097 0.88267 1.41960 1.08198 1.05546 1.65698 1.19560 0.88411 0.84100 0.84722 1.90520 1.13441 1.86776 1.54556 1.22011 0.93795 0.91420 1.02000 1.61797 1.35437 1.00185 1.25384 1.22842 0.98200 1.01668 0.87832 1.22672 0.94845 0.82228 1.01193 1.87928 1.76677 1.35540 1.30078 1.22133 0.94964 0.93731 0.85189 0.91090 1.21943 1.01181 0.96491 0.96741 1.23001 0.95973 0.90971 0.95418 1.47984 1.13404 1.08895 1.60806 1.19966 0.82554 0.89081 0.79749 1.90802 1.52732 1.41567 1.54228 1.20146 0.83239 0.88878 0.77855 1.43557 1.10634 1.17015 1.67205 1.90515 1.52045 1.43944 1.52516 1.21869 1.00652 0.83004 0.95441 1.22566 0.96624 0.91242 0.96302 0.92969 0.92705 0.79196 0.88888 0.93348 0.94640 0.87670 0.88408 0.91825 0.90852 0.89086 0.83451 0.90568 0.75345 0.75559 0.88024 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.68 55.50 0.76 -24.57 16 2 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 3 Si 1.09 24.34 29.92 -169.99 -5.09 19.25 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -10.67 9.68 -14.93 -0.14 -10.82 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.58 -14.47 5.28 -10.97 -0.06 -14.52 16 10 C 0.45 10.44 7.30 -10.99 -0.08 10.36 16 11 O -0.57 -15.20 14.71 5.54 0.08 -15.12 16 12 C 0.04 0.70 5.28 -4.98 -0.03 0.67 16 13 N -0.50 -8.30 4.17 -227.70 -0.95 -9.24 16 14 C 0.02 0.36 5.32 -3.69 -0.02 0.34 16 15 C 0.07 0.91 7.00 37.19 0.26 1.17 16 16 O -0.38 -5.23 10.50 -35.23 -0.37 -5.60 16 17 C 0.10 1.21 2.62 -26.64 -0.07 1.14 16 18 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -1.22 5.76 -26.61 -0.15 -1.37 16 20 C 0.07 0.64 6.01 -3.70 -0.02 0.61 16 21 N -0.58 -6.49 2.98 -173.25 -0.52 -7.00 16 22 C 0.50 5.76 7.74 -11.59 -0.09 5.67 16 23 O -0.52 -7.08 15.91 5.50 0.09 -7.00 16 24 C 0.52 4.74 8.03 -11.59 -0.09 4.64 16 25 N -0.82 -4.55 8.87 30.90 0.27 -4.27 16 26 O -0.51 -5.35 13.96 5.50 0.08 -5.28 16 27 C 0.11 1.45 5.30 -3.70 -0.02 1.43 16 28 C 0.04 0.58 1.97 -67.55 -0.13 0.45 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.09 6.78 -40.82 -0.28 6.82 16 31 H 0.38 8.80 6.73 -40.82 -0.27 8.53 16 32 H 0.09 1.54 5.77 -51.92 -0.30 1.24 16 33 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.96 6.52 -51.93 -0.34 1.62 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.15 1.39 4.20 -55.41 -0.23 1.16 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.42 1.96 8.32 -40.82 -0.34 1.62 16 43 H 0.41 1.33 8.93 -40.82 -0.36 0.97 16 44 H 0.10 1.43 5.30 -51.93 -0.28 1.15 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -34.60 359.86 -6.76 -41.36 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -5.80 Total: 12.61 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -0.69 Total: 13.96 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.49 Total: -59.61 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.12 Total: -32.99 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.09 Total: 19.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.60 -6.76 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177080409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.541 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds