Wall clock time and date at job start Sat Apr 11 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46842 * 89.99957 * 3 2 1 5 5 H 1.48496 * 109.47069 * 329.99564 * 3 2 1 6 6 H 1.48498 * 109.46964 * 209.99426 * 3 2 1 7 7 C 1.38951 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00010 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99904 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00420 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47649 * 170.85413 * 12 10 9 14 14 C 1.47073 * 110.99814 * 290.18484 * 13 12 10 15 15 C 1.53067 * 109.38469 * 177.88729 * 14 13 12 16 16 O 1.43076 * 109.41072 * 56.53193 * 15 14 13 17 17 C 1.42899 * 113.57212 * 301.50214 * 16 15 14 18 18 H 1.08993 * 109.47641 * 299.09644 * 17 16 15 19 19 C 1.52997 * 109.88196 * 178.83030 * 17 16 15 20 20 C 1.53241 * 109.13728 * 178.44540 * 19 17 16 21 21 N 1.46892 * 108.94467 * 54.38319 * 20 19 17 22 22 C 1.34779 * 120.55897 * 126.89400 * 21 20 19 23 23 O 1.21350 * 119.99876 * 186.82598 * 22 21 20 24 24 C 1.49447 * 119.99953 * 6.81663 * 22 21 20 25 25 N 1.34774 * 120.00060 * 186.46420 * 24 22 21 26 26 O 1.21349 * 120.00197 * 6.47159 * 24 22 21 27 27 C 1.46995 * 118.88210 * 306.86370 * 21 20 19 28 28 C 1.46898 * 111.00070 * 166.75363 * 13 12 10 29 29 H 1.09002 * 109.53427 * 62.61940 * 28 13 12 30 30 H 0.97002 * 119.99535 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99878 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46899 * 290.85702 * 12 10 9 33 33 H 1.09007 * 109.47336 * 50.84807 * 12 10 9 34 34 H 1.08996 * 109.48527 * 297.85777 * 14 13 12 35 35 H 1.08998 * 109.48203 * 57.89677 * 14 13 12 36 36 H 1.08998 * 109.48157 * 176.51201 * 15 14 13 37 37 H 1.09005 * 109.48501 * 296.53724 * 15 14 13 38 38 H 1.08995 * 109.52569 * 298.34389 * 19 17 16 39 39 H 1.08997 * 109.52191 * 58.54885 * 19 17 16 40 40 H 1.09004 * 109.55515 * 174.22022 * 20 19 17 41 41 H 1.09001 * 109.56156 * 294.42890 * 20 19 17 42 42 H 0.97005 * 119.99459 * 0.02562 * 25 24 22 43 43 H 0.96999 * 120.00480 * 180.02562 * 25 24 22 44 44 H 1.08998 * 109.62087 * 173.21188 * 27 21 20 45 45 H 1.08995 * 109.62547 * 293.58754 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 1.4456 2.6526 -0.7001 6 1 3.5457 1.4402 -0.6999 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0030 12 6 1.2439 -4.8630 0.0010 13 7 2.1835 -5.9707 -0.2178 14 6 2.7031 -5.9572 -1.5936 15 6 3.7158 -7.0920 -1.7655 16 8 3.0960 -8.3372 -1.4301 17 6 2.5854 -8.3804 -0.0961 18 1 3.4027 -8.2376 0.6107 19 6 1.9181 -9.7327 0.1621 20 6 1.4116 -9.7752 1.6077 21 7 0.5434 -8.6139 1.8431 22 6 -0.7000 -8.7769 2.3371 23 8 -1.4524 -7.8277 2.4117 24 6 -1.1521 -10.1265 2.7927 25 7 -2.4334 -10.3181 3.1640 26 8 -0.3655 -11.0498 2.8286 27 6 1.0537 -7.2711 1.5315 28 6 1.5533 -7.2629 0.0839 29 1 0.7161 -7.4273 -0.5945 30 1 -0.4849 -0.8401 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.7443 -4.9945 0.9609 33 1 0.5012 -4.8535 -0.7968 34 1 1.8799 -6.0953 -2.2945 35 1 3.1904 -5.0019 -1.7888 36 1 4.0556 -7.1223 -2.8007 37 1 4.5682 -6.9213 -1.1079 38 1 1.0792 -9.8615 -0.5218 39 1 2.6426 -10.5320 0.0062 40 1 0.8456 -10.6927 1.7693 41 1 2.2591 -9.7440 2.2924 42 1 -3.0623 -9.5801 3.1351 43 1 -2.7269 -11.1940 3.4601 44 1 0.2539 -6.5397 1.6469 45 1 1.8742 -7.0257 2.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177080409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:23 Heat of formation + Delta-G solvation = -142.621492 kcal Electronic energy + Delta-G solvation = -30905.223284 eV Core-core repulsion = 26536.703055 eV Total energy + Delta-G solvation = -4368.520229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28959 -41.23746 -40.08743 -39.48558 -37.85847 -37.05614 -36.15183 -34.80700 -33.26901 -33.16698 -31.84056 -30.47992 -28.19260 -26.88811 -25.70518 -25.42239 -23.77212 -22.93156 -21.67846 -21.33362 -20.97140 -19.96890 -19.11168 -18.43533 -18.22791 -17.75560 -17.43431 -17.14732 -16.99155 -16.79497 -16.61202 -16.11147 -15.80503 -15.78179 -15.59532 -15.44305 -15.14168 -14.89853 -14.82773 -14.39055 -14.28034 -14.03171 -13.51173 -13.42643 -13.34939 -12.90656 -12.80333 -12.59330 -12.45598 -12.21218 -11.96304 -11.94630 -11.89732 -11.55101 -11.48250 -10.96138 -10.79289 -10.43076 -10.35189 -10.11620 -10.02335 -9.52383 -8.93730 -6.07811 0.21205 1.20006 1.50961 1.53789 1.81133 1.97001 1.98405 2.25863 2.44586 2.58242 2.65948 3.10633 3.14990 3.33225 3.47085 3.59270 3.76040 3.88625 3.97459 4.00707 4.08291 4.11996 4.19124 4.25792 4.33223 4.39760 4.47186 4.57637 4.61815 4.72819 4.80278 4.85735 4.88334 5.07311 5.14652 5.52569 5.64840 5.69793 5.81041 5.82502 5.94286 6.06416 6.07951 6.55257 6.57427 6.72758 6.94763 7.42094 7.89753 8.53603 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.002977 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.559309 B = 9403.985591 C =11091.839394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.043 4.043 3 Si 1.136 2.864 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.407 4.407 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.449 3.551 11 O -0.604 6.604 12 C 0.052 3.948 13 N -0.517 5.517 14 C 0.023 3.977 15 C 0.074 3.926 16 O -0.385 6.385 17 C 0.096 3.904 18 H 0.070 0.930 19 C -0.115 4.115 20 C 0.071 3.929 21 N -0.577 5.577 22 C 0.500 3.500 23 O -0.545 6.545 24 C 0.524 3.476 25 N -0.796 5.796 26 O -0.527 6.527 27 C 0.117 3.883 28 C 0.049 3.951 29 H 0.048 0.952 30 H 0.258 0.742 31 H 0.382 0.618 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.086 0.914 42 H 0.422 0.578 43 H 0.426 0.574 44 H 0.088 0.912 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -24.340 2.892 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.241 4.241 3 Si 0.956 3.044 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.536 4.536 8 H 0.093 0.907 9 N -0.227 5.227 10 C 0.237 3.763 11 O -0.489 6.489 12 C -0.079 4.079 13 N -0.242 5.242 14 C -0.105 4.105 15 C -0.003 4.003 16 O -0.304 6.304 17 C 0.038 3.962 18 H 0.088 0.912 19 C -0.154 4.154 20 C -0.050 4.050 21 N -0.310 5.310 22 C 0.283 3.717 23 O -0.423 6.423 24 C 0.302 3.698 25 N -0.362 5.362 26 O -0.405 6.405 27 C -0.006 4.006 28 C -0.060 4.060 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.216 0.784 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.172 0.828 41 H 0.105 0.895 42 H 0.254 0.746 43 H 0.262 0.738 44 H 0.107 0.893 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.370 -22.755 3.091 23.086 hybrid contribution -1.411 -0.938 -0.372 1.734 sum -3.781 -23.693 2.719 24.146 Atomic orbital electron populations 1.70944 1.07061 1.29460 1.48226 1.27835 0.96663 1.05374 0.94215 0.82595 0.73662 0.70154 0.78033 1.19623 1.19821 1.20123 1.20533 0.93895 0.85442 1.53697 0.90680 1.42016 1.08544 1.05547 1.66582 1.20494 0.88273 0.85327 0.82233 1.90493 1.15322 1.87615 1.55423 1.21840 0.93502 0.89085 1.03473 1.61767 1.35572 1.00983 1.25873 1.22797 0.98788 1.01163 0.87734 1.22656 0.93692 0.81391 1.02531 1.87935 1.76612 1.35141 1.30703 1.22289 0.94634 0.94580 0.84703 0.91222 1.21928 1.01349 0.95337 0.96763 1.23121 0.96078 0.90317 0.95437 1.48056 1.13753 1.08634 1.60571 1.20447 0.82221 0.89874 0.79137 1.90787 1.53460 1.42704 1.55347 1.19713 0.84170 0.87558 0.78326 1.43426 1.09372 1.18032 1.65414 1.90510 1.52627 1.43752 1.53637 1.21677 1.00059 0.83977 0.94864 1.22593 0.96815 0.90033 0.96603 0.93373 0.93064 0.78380 0.87284 0.91873 0.94089 0.90876 0.86050 0.92442 0.90995 0.87036 0.82816 0.89529 0.74595 0.73836 0.89346 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.78 13.68 21.66 0.30 -51.48 16 2 C -0.04 -2.34 5.50 84.93 0.47 -1.87 16 3 Si 1.14 48.86 29.92 68.60 2.05 50.91 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.41 -23.31 9.68 84.04 0.81 -22.50 16 8 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.59 -30.24 5.28 -306.99 -1.62 -31.86 16 10 C 0.45 21.49 7.30 87.66 0.64 22.13 16 11 O -0.60 -33.17 14.71 -3.09 -0.05 -33.22 16 12 C 0.05 1.87 5.28 85.56 0.45 2.32 16 13 N -0.52 -16.94 4.17 -874.30 -3.64 -20.58 16 14 C 0.02 0.74 5.32 86.29 0.46 1.20 16 15 C 0.07 1.93 7.00 72.00 0.50 2.43 16 16 O -0.39 -9.79 10.50 -148.98 -1.56 -11.35 16 17 C 0.10 2.21 2.62 30.65 0.08 2.29 16 18 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 19 C -0.12 -1.96 5.76 30.67 0.18 -1.78 16 20 C 0.07 1.17 6.01 86.39 0.52 1.69 16 21 N -0.58 -12.17 2.98 -820.39 -2.44 -14.61 16 22 C 0.50 10.79 7.74 87.27 0.68 11.47 16 23 O -0.55 -14.52 15.91 -3.25 -0.05 -14.57 16 24 C 0.52 8.52 8.03 87.27 0.70 9.23 16 25 N -0.80 -7.07 8.87 -174.50 -1.55 -8.61 16 26 O -0.53 -9.79 13.96 -3.24 -0.05 -9.84 16 27 C 0.12 2.92 5.30 86.33 0.46 3.38 16 28 C 0.05 1.29 1.97 45.02 0.09 1.38 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.26 14.19 6.78 -92.71 -0.63 13.56 16 31 H 0.38 18.34 6.73 -92.71 -0.62 17.71 16 32 H 0.11 3.59 5.77 -2.38 -0.01 3.58 16 33 H 0.06 2.10 8.08 -2.38 -0.02 2.08 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 2.81 6.52 -2.39 -0.02 2.80 16 36 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.16 2.52 4.20 -57.52 -0.24 2.28 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.42 3.12 8.32 -92.70 -0.77 2.35 16 43 H 0.43 1.65 8.93 -92.71 -0.83 0.82 16 44 H 0.09 2.45 5.30 -2.39 -0.01 2.44 16 45 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -75.01 359.86 -3.81 -78.82 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -1.23 Total: 35.04 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 6.03 Total: 31.37 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -8.96 Total: -127.15 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -1.71 Total: -68.98 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.91 kcal Total: -75.01 -3.81 -78.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177080409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.805 kcal (2) G-P(sol) polarization free energy of solvation -75.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds