Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72275 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72123 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72159 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.27478 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.27571 * 7 2 1 10 10 C 1.34777 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47092 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99935 * 179.97438 * 13 12 10 15 15 C 1.53046 * 109.45994 * 275.06993 * 14 13 12 16 16 C 1.53184 * 109.31375 * 178.61430 * 15 14 13 17 17 N 1.46934 * 108.77742 * 54.63219 * 16 15 14 18 18 C 1.34778 * 120.62721 * 126.37110 * 17 16 15 19 19 O 1.21278 * 119.99117 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00134 * 0.02562 * 18 17 16 21 21 H 1.08995 * 110.50919 * 42.74323 * 20 18 17 22 22 C 1.54094 * 110.56460 * 279.99965 * 20 18 17 23 23 O 1.45707 * 104.01060 * 241.43011 * 22 20 18 24 24 C 1.33777 * 109.47146 * 359.97438 * 23 22 20 25 25 O 1.21515 * 123.06738 * 180.02562 * 24 23 22 26 26 N 1.34002 * 113.86133 * 359.97438 * 24 23 22 27 27 C 1.46920 * 118.73844 * 306.39474 * 17 16 15 28 28 C 1.53034 * 109.46031 * 155.00390 * 14 13 12 29 29 H 0.96991 * 120.00673 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46547 * 300.00234 * 12 10 9 32 32 H 1.09000 * 109.46974 * 60.00144 * 12 10 9 33 33 H 1.00903 * 111.00303 * 56.04853 * 13 12 10 34 34 H 1.08998 * 109.45793 * 35.02565 * 14 13 12 35 35 H 1.08998 * 109.49610 * 298.56855 * 15 14 13 36 36 H 1.08998 * 109.49760 * 58.66189 * 15 14 13 37 37 H 1.09005 * 109.58732 * 294.85090 * 16 15 14 38 38 H 1.09000 * 109.59056 * 174.42557 * 16 15 14 39 39 H 1.09002 * 110.52424 * 0.05880 * 22 20 18 40 40 H 1.08997 * 110.52189 * 122.80028 * 22 20 18 41 41 H 0.96992 * 125.56206 * 180.02562 * 26 24 23 42 42 H 1.09004 * 109.58485 * 293.82020 * 27 17 16 43 43 H 1.09001 * 109.58872 * 173.39445 * 27 17 16 44 44 H 1.09006 * 109.49537 * 301.33569 * 28 14 13 45 45 H 1.08999 * 109.50556 * 61.43397 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5016 2.0428 -1.4001 5 1 1.4429 2.6543 0.6941 6 1 3.5428 1.4417 0.7059 7 6 2.0088 -1.2034 0.0059 8 1 3.0888 -1.2035 0.0103 9 7 1.3232 -2.3907 0.0059 10 6 1.9970 -3.5579 0.0111 11 8 3.2099 -3.5580 0.0161 12 6 1.2434 -4.8630 0.0105 13 7 2.1979 -5.9796 0.0174 14 6 1.4975 -7.2709 0.0177 15 6 1.1363 -7.6547 1.4545 16 6 0.3759 -8.9844 1.4478 17 7 1.1834 -9.9875 0.7402 18 6 1.4810 -11.1653 1.3237 19 8 2.1488 -11.9848 0.7292 20 6 0.9842 -11.4640 2.7146 21 1 -0.0524 -11.1462 2.8263 22 6 1.8768 -10.7785 3.7671 23 8 2.4202 -11.8852 4.5436 24 6 1.9504 -13.0412 4.0614 25 8 2.2465 -14.1234 4.5281 26 7 1.1227 -12.8968 3.0176 27 6 1.6605 -9.6818 -0.6154 28 6 2.4066 -8.3441 -0.5855 29 1 -0.4851 -0.8399 -0.0004 30 1 0.3532 -2.3906 0.0015 31 1 0.6131 -4.9188 0.8980 32 1 0.6205 -4.9225 -0.8819 33 1 2.8292 -5.9108 0.8015 34 1 0.5871 -7.1903 -0.5762 35 1 2.0477 -7.7597 2.0431 36 1 0.5080 -6.8785 1.8914 37 1 -0.5785 -8.8571 0.9368 38 1 0.2029 -9.3117 2.4731 39 1 2.6789 -10.2211 3.2833 40 1 1.2828 -10.1214 4.4023 41 1 0.6866 -13.6191 2.5393 42 1 0.8109 -9.6112 -1.2945 43 1 2.3352 -10.4691 -0.9515 44 1 2.6824 -8.0586 -1.6007 45 1 3.3060 -8.4427 0.0222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200348573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = -128.151112 kcal Electronic energy + Delta-G solvation = -29504.040756 eV Core-core repulsion = 25136.148011 eV Total energy + Delta-G solvation = -4367.892746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40111 -40.52892 -38.81028 -38.00052 -37.57750 -35.48151 -35.26128 -34.29692 -32.26044 -31.41073 -31.02393 -30.14177 -27.09061 -25.53579 -24.40830 -23.79339 -23.20168 -22.92033 -21.37782 -20.07128 -19.54673 -18.80595 -18.47334 -17.98613 -17.44607 -17.05425 -16.46180 -16.10526 -15.85729 -15.42604 -15.23697 -15.03445 -14.82349 -14.68551 -14.44998 -14.26748 -14.21422 -13.98120 -13.83743 -13.75218 -13.17615 -12.88683 -12.75567 -12.58956 -12.13083 -11.78058 -11.68840 -11.43187 -11.27681 -11.22814 -11.18835 -10.98910 -10.88861 -10.84348 -10.26586 -9.93756 -9.82751 -9.61797 -9.29765 -8.63206 -8.24847 -8.10338 -6.82205 -3.95810 1.77065 1.91253 2.19882 2.39067 2.95352 3.25802 3.30958 3.35976 3.49869 3.55128 3.75674 3.88214 3.93255 4.12109 4.25510 4.35556 4.44398 4.48640 4.54184 4.71319 4.78265 4.82352 4.85263 5.01353 5.07213 5.16721 5.25680 5.30584 5.43220 5.48408 5.59494 5.68795 5.75409 5.88670 5.97341 6.04864 6.19044 6.63425 6.70714 6.98865 7.41533 7.43143 7.57303 7.73863 8.01253 8.52318 8.72258 9.39901 9.79378 10.61166 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.001867 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.004590 B =14990.281067 C =15445.961632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.009 4.009 3 Si 1.093 2.907 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.383 4.383 8 H 0.100 0.900 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.577 6.577 12 C 0.051 3.949 13 N -0.662 5.662 14 C 0.088 3.912 15 C -0.171 4.171 16 C 0.106 3.894 17 N -0.604 5.604 18 C 0.505 3.495 19 O -0.519 6.519 20 C 0.075 3.925 21 H 0.128 0.872 22 C 0.054 3.946 23 O -0.320 6.320 24 C 0.651 3.349 25 O -0.515 6.515 26 N -0.711 5.711 27 C 0.112 3.888 28 C -0.122 4.122 29 H 0.261 0.739 30 H 0.375 0.625 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.351 0.649 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.441 0.559 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 -20.411 4.039 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.212 4.212 3 Si 0.919 3.081 4 H -0.211 1.211 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.512 4.512 8 H 0.117 0.883 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.460 6.460 12 C -0.082 4.082 13 N -0.293 5.293 14 C -0.023 4.023 15 C -0.211 4.211 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.289 3.711 19 O -0.394 6.394 20 C -0.035 4.035 21 H 0.146 0.854 22 C -0.022 4.022 23 O -0.230 6.230 24 C 0.404 3.596 25 O -0.399 6.399 26 N -0.383 5.383 27 C -0.010 4.010 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.208 0.792 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.171 0.829 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.285 0.715 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.613 -19.547 3.581 20.401 hybrid contribution -1.218 -1.745 0.476 2.181 sum -5.831 -21.292 4.058 22.446 Atomic orbital electron populations 1.70879 1.06524 1.29381 1.47195 1.26522 0.96541 1.02678 0.95426 0.83094 0.74385 0.73379 0.77220 1.21055 1.20628 1.20908 1.20572 0.94711 0.83827 1.52072 0.88261 1.41944 1.08167 1.05595 1.65591 1.19734 0.88440 0.84470 0.84712 1.90540 1.13678 1.86885 1.54897 1.21705 0.94389 0.91045 1.01016 1.60158 1.18544 0.99426 1.51162 1.21597 0.96940 0.89791 0.93949 1.22777 1.01592 0.96770 0.99948 1.21846 0.94484 0.88272 0.97131 1.48175 1.52630 1.15697 1.17317 1.20512 0.80838 0.82182 0.87546 1.90780 1.37898 1.46361 1.64319 1.22346 1.03031 0.83959 0.94201 0.85414 1.24301 0.98001 0.88480 0.91412 1.87333 1.65933 1.15672 1.54044 1.18428 0.77552 0.84230 0.79422 1.91108 1.62474 1.22657 1.63652 1.45672 1.50812 1.07350 1.34505 1.21760 0.99462 0.98124 0.81690 1.21910 0.98551 0.92358 1.03255 0.92767 0.79182 0.93936 0.89657 0.82877 0.90177 0.90815 0.90032 0.90167 0.90001 0.87051 0.85991 0.71529 0.90855 0.88582 0.89320 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.68 55.50 0.76 -23.63 16 2 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 3 Si 1.09 23.62 29.92 -169.99 -5.09 18.53 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.38 -10.40 9.68 -14.93 -0.14 -10.54 16 8 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 9 N -0.57 -13.71 5.28 -10.96 -0.06 -13.77 16 10 C 0.44 9.71 7.82 -10.98 -0.09 9.63 16 11 O -0.58 -15.05 15.78 5.55 0.09 -14.97 16 12 C 0.05 0.77 5.96 -4.98 -0.03 0.74 16 13 N -0.66 -8.83 5.87 -107.95 -0.63 -9.46 16 14 C 0.09 0.76 2.43 -67.67 -0.16 0.59 16 15 C -0.17 -1.00 5.33 -26.61 -0.14 -1.15 16 16 C 0.11 0.38 6.19 -3.71 -0.02 0.36 16 17 N -0.60 -3.58 2.97 -172.77 -0.51 -4.09 16 18 C 0.50 3.75 6.82 -10.99 -0.07 3.67 16 19 O -0.52 -6.11 15.98 5.56 0.09 -6.03 16 20 C 0.07 0.35 3.15 -68.19 -0.21 0.14 16 21 H 0.13 0.14 7.02 -51.93 -0.36 -0.22 16 22 C 0.05 0.25 7.12 37.73 0.27 0.52 16 23 O -0.32 -3.03 11.09 -37.85 -0.42 -3.45 16 24 C 0.65 7.06 9.16 53.71 0.49 7.55 16 25 O -0.52 -7.67 18.04 -19.12 -0.34 -8.02 16 26 N -0.71 -5.12 5.63 -59.36 -0.33 -5.46 16 27 C 0.11 0.78 6.43 -3.71 -0.02 0.76 16 28 C -0.12 -1.01 5.69 -26.61 -0.15 -1.16 16 29 H 0.26 6.74 6.77 -40.82 -0.28 6.46 16 30 H 0.38 8.17 6.73 -40.82 -0.27 7.90 16 31 H 0.04 0.54 7.41 -51.93 -0.38 0.16 16 32 H 0.09 1.18 8.06 -51.93 -0.42 0.76 16 33 H 0.35 4.98 8.18 -39.29 -0.32 4.66 16 34 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.48 7.42 -51.93 -0.39 0.10 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.08 5.25 -51.93 -0.27 -0.19 16 39 H 0.11 0.51 7.72 -51.93 -0.40 0.11 16 40 H 0.12 0.14 8.12 -51.93 -0.42 -0.28 16 41 H 0.44 2.61 8.96 -40.82 -0.37 2.25 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.82 7.00 -51.93 -0.36 0.45 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -38.07 371.18 -7.19 -45.26 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.94 Total: 8.72 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.39 Total: 10.77 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.78 Total: -56.41 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.59 Total: -32.46 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.09 Total: 18.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.07 -7.19 -45.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200348573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.893 kcal (2) G-P(sol) polarization free energy of solvation -38.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds