Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72275 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72123 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72159 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.27478 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.27571 * 7 2 1 10 10 C 1.34777 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47092 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99935 * 179.97438 * 13 12 10 15 15 C 1.53046 * 109.45994 * 275.06993 * 14 13 12 16 16 C 1.53184 * 109.31375 * 178.61430 * 15 14 13 17 17 N 1.46934 * 108.77742 * 54.63219 * 16 15 14 18 18 C 1.34778 * 120.62721 * 126.37110 * 17 16 15 19 19 O 1.21278 * 119.99117 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00134 * 0.02562 * 18 17 16 21 21 H 1.08995 * 110.50919 * 42.74323 * 20 18 17 22 22 C 1.54094 * 110.56460 * 279.99965 * 20 18 17 23 23 O 1.45707 * 104.01060 * 241.43011 * 22 20 18 24 24 C 1.33777 * 109.47146 * 359.97438 * 23 22 20 25 25 O 1.21515 * 123.06738 * 180.02562 * 24 23 22 26 26 N 1.34002 * 113.86133 * 359.97438 * 24 23 22 27 27 C 1.46920 * 118.73844 * 306.39474 * 17 16 15 28 28 C 1.53034 * 109.46031 * 155.00390 * 14 13 12 29 29 H 0.96991 * 120.00673 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46547 * 300.00234 * 12 10 9 32 32 H 1.09000 * 109.46974 * 60.00144 * 12 10 9 33 33 H 1.00903 * 111.00303 * 56.04853 * 13 12 10 34 34 H 1.08998 * 109.45793 * 35.02565 * 14 13 12 35 35 H 1.08998 * 109.49610 * 298.56855 * 15 14 13 36 36 H 1.08998 * 109.49760 * 58.66189 * 15 14 13 37 37 H 1.09005 * 109.58732 * 294.85090 * 16 15 14 38 38 H 1.09000 * 109.59056 * 174.42557 * 16 15 14 39 39 H 1.09002 * 110.52424 * 0.05880 * 22 20 18 40 40 H 1.08997 * 110.52189 * 122.80028 * 22 20 18 41 41 H 0.96992 * 125.56206 * 180.02562 * 26 24 23 42 42 H 1.09004 * 109.58485 * 293.82020 * 27 17 16 43 43 H 1.09001 * 109.58872 * 173.39445 * 27 17 16 44 44 H 1.09006 * 109.49537 * 301.33569 * 28 14 13 45 45 H 1.08999 * 109.50556 * 61.43397 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5016 2.0428 -1.4001 5 1 1.4429 2.6543 0.6941 6 1 3.5428 1.4417 0.7059 7 6 2.0088 -1.2034 0.0059 8 1 3.0888 -1.2035 0.0103 9 7 1.3232 -2.3907 0.0059 10 6 1.9970 -3.5579 0.0111 11 8 3.2099 -3.5580 0.0161 12 6 1.2434 -4.8630 0.0105 13 7 2.1979 -5.9796 0.0174 14 6 1.4975 -7.2709 0.0177 15 6 1.1363 -7.6547 1.4545 16 6 0.3759 -8.9844 1.4478 17 7 1.1834 -9.9875 0.7402 18 6 1.4810 -11.1653 1.3237 19 8 2.1488 -11.9848 0.7292 20 6 0.9842 -11.4640 2.7146 21 1 -0.0524 -11.1462 2.8263 22 6 1.8768 -10.7785 3.7671 23 8 2.4202 -11.8852 4.5436 24 6 1.9504 -13.0412 4.0614 25 8 2.2465 -14.1234 4.5281 26 7 1.1227 -12.8968 3.0176 27 6 1.6605 -9.6818 -0.6154 28 6 2.4066 -8.3441 -0.5855 29 1 -0.4851 -0.8399 -0.0004 30 1 0.3532 -2.3906 0.0015 31 1 0.6131 -4.9188 0.8980 32 1 0.6205 -4.9225 -0.8819 33 1 2.8292 -5.9108 0.8015 34 1 0.5871 -7.1903 -0.5762 35 1 2.0477 -7.7597 2.0431 36 1 0.5080 -6.8785 1.8914 37 1 -0.5785 -8.8571 0.9368 38 1 0.2029 -9.3117 2.4731 39 1 2.6789 -10.2211 3.2833 40 1 1.2828 -10.1214 4.4023 41 1 0.6866 -13.6191 2.5393 42 1 0.8109 -9.6112 -1.2945 43 1 2.3352 -10.4691 -0.9515 44 1 2.6824 -8.0586 -1.6007 45 1 3.3060 -8.4427 0.0222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200348573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = -161.902792 kcal Electronic energy + Delta-G solvation = -29505.504339 eV Core-core repulsion = 25136.148011 eV Total energy + Delta-G solvation = -4369.356328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.00400 -41.15098 -40.30671 -38.97847 -38.39979 -36.60546 -35.98229 -35.86179 -33.22620 -32.85162 -31.91904 -30.69530 -28.26622 -26.47506 -25.63681 -24.43118 -24.00754 -23.60498 -22.01876 -21.52227 -20.38793 -19.94793 -19.36261 -19.04199 -18.20534 -18.01110 -17.53598 -16.93928 -16.74029 -16.57185 -16.24862 -15.85676 -15.70039 -15.52182 -15.40049 -15.34914 -15.19227 -14.91461 -14.68174 -14.53650 -14.08588 -13.84544 -13.50635 -13.39343 -13.28205 -13.06420 -12.76782 -12.63168 -12.25726 -12.07686 -12.00392 -11.93558 -11.87544 -11.86339 -11.57272 -11.52001 -11.48653 -10.40618 -10.37821 -10.08431 -9.82880 -9.26854 -8.90439 -6.04536 1.23310 1.29551 1.53526 1.56253 1.56324 1.81473 1.82747 2.04074 2.41370 2.48246 2.83019 2.97017 3.11277 3.18532 3.41250 3.65780 3.70963 3.90148 3.92418 4.02353 4.13859 4.21145 4.31310 4.34039 4.36884 4.40658 4.48856 4.53911 4.62288 4.73895 4.79652 4.88522 5.02076 5.18367 5.26427 5.45744 5.60538 5.62692 5.97972 6.00833 6.07766 6.21027 6.39675 6.60991 6.77560 6.82059 6.93221 7.47274 7.96586 8.57726 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.001867 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.004590 B =14990.281067 C =15445.961632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.042 4.042 3 Si 1.133 2.867 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.409 4.409 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.069 3.931 13 N -0.683 5.683 14 C 0.088 3.912 15 C -0.166 4.166 16 C 0.105 3.895 17 N -0.597 5.597 18 C 0.502 3.498 19 O -0.572 6.572 20 C 0.081 3.919 21 H 0.181 0.819 22 C 0.047 3.953 23 O -0.339 6.339 24 C 0.648 3.352 25 O -0.570 6.570 26 N -0.700 5.700 27 C 0.117 3.883 28 C -0.115 4.115 29 H 0.261 0.739 30 H 0.386 0.614 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.344 0.656 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.169 0.831 41 H 0.445 0.555 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -20.072 4.659 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.240 4.240 3 Si 0.953 3.047 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.539 4.539 8 H 0.088 0.912 9 N -0.226 5.226 10 C 0.227 3.773 11 O -0.508 6.508 12 C -0.063 4.063 13 N -0.314 5.314 14 C -0.021 4.021 15 C -0.206 4.206 16 C -0.017 4.017 17 N -0.329 5.329 18 C 0.289 3.711 19 O -0.450 6.450 20 C -0.028 4.028 21 H 0.198 0.802 22 C -0.027 4.027 23 O -0.249 6.249 24 C 0.401 3.599 25 O -0.458 6.458 26 N -0.372 5.372 27 C -0.005 4.005 28 C -0.154 4.154 29 H 0.072 0.928 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.163 0.837 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.187 0.813 41 H 0.290 0.710 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.246 -19.182 4.179 20.927 hybrid contribution -0.371 -1.848 0.205 1.896 sum -7.617 -21.030 4.383 22.792 Atomic orbital electron populations 1.70939 1.06887 1.29612 1.48177 1.27724 0.96739 1.05193 0.94353 0.82612 0.73662 0.70442 0.77936 1.19813 1.19743 1.20408 1.20507 0.93804 0.85813 1.53741 0.91172 1.41995 1.08641 1.05467 1.66520 1.21070 0.88326 0.86216 0.81720 1.90513 1.16189 1.87949 1.56109 1.21555 0.93932 0.87424 1.03402 1.60118 1.19118 1.00852 1.51358 1.21687 0.96756 0.87294 0.96371 1.22699 1.02035 0.98401 0.97459 1.22120 0.94184 0.86166 0.99253 1.48223 1.52128 1.15777 1.16817 1.20998 0.79946 0.81895 0.88286 1.90772 1.40300 1.48145 1.65828 1.22679 1.05621 0.82310 0.92186 0.80222 1.24795 0.98607 0.87519 0.91813 1.87292 1.66389 1.16295 1.54881 1.18593 0.77568 0.83967 0.79819 1.91052 1.64445 1.24798 1.65508 1.45661 1.49363 1.08976 1.33204 1.21612 0.99619 0.96383 0.82930 1.21806 0.98249 0.93234 1.02136 0.92800 0.78007 0.90581 0.87749 0.83746 0.88880 0.91202 0.89014 0.88017 0.86369 0.87197 0.81325 0.70973 0.89074 0.90620 0.90733 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 13.68 21.66 0.30 -48.77 16 2 C -0.04 -2.18 5.50 84.93 0.47 -1.72 16 3 Si 1.13 47.18 29.92 68.60 2.05 49.24 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.41 -22.56 9.68 84.04 0.81 -21.75 16 8 H 0.07 4.21 7.16 -2.91 -0.02 4.19 16 9 N -0.59 -27.93 5.28 -306.98 -1.62 -29.55 16 10 C 0.44 19.15 7.82 87.66 0.69 19.83 16 11 O -0.62 -33.00 15.78 -3.07 -0.05 -33.05 16 12 C 0.07 1.90 5.96 85.56 0.51 2.41 16 13 N -0.68 -17.06 5.87 -495.44 -2.91 -19.97 16 14 C 0.09 1.27 2.43 44.94 0.11 1.38 16 15 C -0.17 -1.26 5.33 30.67 0.16 -1.09 16 16 C 0.10 0.19 6.19 86.36 0.53 0.72 16 17 N -0.60 -5.15 2.97 -818.90 -2.43 -7.58 16 18 C 0.50 6.25 6.82 87.65 0.60 6.85 16 19 O -0.57 -13.25 15.98 -3.02 -0.05 -13.30 16 20 C 0.08 0.47 3.15 44.50 0.14 0.61 16 21 H 0.18 -0.76 7.02 -2.39 -0.02 -0.78 16 22 C 0.05 0.27 7.12 72.35 0.52 0.79 16 23 O -0.34 -5.96 11.09 -47.37 -0.53 -6.49 16 24 C 0.65 13.79 9.16 129.91 1.19 14.98 16 25 O -0.57 -17.60 18.04 19.64 0.35 -17.24 16 26 N -0.70 -8.94 5.63 -573.41 -3.23 -12.17 16 27 C 0.12 1.45 6.43 86.37 0.56 2.00 16 28 C -0.12 -1.79 5.69 30.67 0.17 -1.61 16 29 H 0.26 13.33 6.77 -92.72 -0.63 12.70 16 30 H 0.39 16.51 6.73 -92.71 -0.62 15.89 16 31 H 0.08 1.63 7.41 -2.39 -0.02 1.61 16 32 H 0.10 2.54 8.06 -2.39 -0.02 2.52 16 33 H 0.34 9.42 8.18 -89.69 -0.73 8.68 16 34 H 0.09 1.14 7.80 -2.39 -0.02 1.12 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.60 7.42 -2.39 -0.02 0.58 16 37 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 38 H 0.12 -0.60 5.25 -2.39 -0.01 -0.61 16 39 H 0.11 0.70 7.72 -2.39 -0.02 0.68 16 40 H 0.17 -0.59 8.12 -2.39 -0.02 -0.61 16 41 H 0.45 4.76 8.96 -92.71 -0.83 3.93 16 42 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.08 1.29 7.00 -2.39 -0.02 1.27 16 44 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -88.90 371.18 -2.63 -91.53 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.97 Total: 23.95 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.46 Total: 23.41 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -9.90 Total: -118.05 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -0.27 Total: -70.08 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.05 Total: 49.24 kcal Total: -88.90 -2.63 -91.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200348573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.372 kcal (2) G-P(sol) polarization free energy of solvation -88.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds