Wall clock time and date at job start Sat Apr 11 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00048 * 2 1 4 4 H 1.48495 * 109.46913 * 240.00231 * 3 2 1 5 5 H 1.48498 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47306 * 119.99937 * 3 2 1 7 7 C 1.38951 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00118 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99996 * 179.97438 * 9 7 2 11 11 O 1.21301 * 120.00095 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00050 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47154 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00183 * 179.97438 * 13 12 10 15 15 C 1.53041 * 109.46117 * 154.99792 * 14 13 12 16 16 C 1.53189 * 109.31043 * 181.38696 * 15 14 13 17 17 N 1.46923 * 108.77848 * 305.36284 * 16 15 14 18 18 C 1.34777 * 120.63655 * 233.59137 * 17 16 15 19 19 O 1.21283 * 119.99400 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00454 * 180.02562 * 18 17 16 21 21 H 1.09005 * 115.55915 * 34.30523 * 20 18 17 22 22 C 1.52993 * 117.49904 * 248.62084 * 20 18 17 23 23 C 1.52994 * 60.00156 * 252.50939 * 22 20 18 24 24 H 1.09000 * 117.50277 * 107.51088 * 23 22 20 25 25 N 1.46507 * 117.49874 * 252.51360 * 23 22 20 26 26 O 1.21803 * 119.99839 * 8.60368 * 25 23 22 27 27 O 1.21799 * 119.99959 * 188.33282 * 25 23 22 28 28 C 1.46934 * 118.73575 * 53.85907 * 17 16 15 29 29 C 1.53035 * 109.45911 * 275.07041 * 14 13 12 30 30 H 0.96999 * 120.00127 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00377 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47082 * 59.99838 * 12 10 9 33 33 H 1.08999 * 109.47432 * 299.99699 * 12 10 9 34 34 H 1.00904 * 111.00094 * 56.04202 * 13 12 10 35 35 H 1.09000 * 109.44730 * 35.03208 * 14 13 12 36 36 H 1.08998 * 109.49323 * 61.43170 * 15 14 13 37 37 H 1.09005 * 109.52497 * 301.35622 * 15 14 13 38 38 H 1.09003 * 109.58637 * 185.57937 * 16 15 14 39 39 H 1.08995 * 109.58925 * 65.15433 * 16 15 14 40 40 H 1.09002 * 117.50244 * 145.01871 * 22 20 18 41 41 H 1.09002 * 117.51831 * 359.97438 * 22 20 18 42 42 H 1.09005 * 109.58029 * 65.92984 * 28 17 16 43 43 H 1.09000 * 109.58664 * 186.35028 * 28 17 16 44 44 H 1.09002 * 109.49809 * 298.56161 * 29 14 13 45 45 H 1.08994 * 109.50190 * 58.65772 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.4982 -7.2709 0.0015 15 6 2.4041 -8.3426 -0.6090 16 6 1.6579 -9.6802 -0.6379 17 7 1.1881 -9.9891 0.7195 18 6 1.4883 -11.1685 1.2984 19 8 2.1519 -11.9871 0.6981 20 6 0.9985 -11.4707 2.6912 21 1 0.0217 -11.0592 2.9458 22 6 2.0435 -11.5509 3.8057 23 6 1.3726 -12.8267 3.2930 24 1 1.9731 -13.5005 2.6818 25 7 0.3905 -13.4728 4.1673 26 8 0.0192 -12.9138 5.1838 27 8 -0.0583 -14.5668 3.8752 28 6 0.3796 -8.9899 1.4316 29 6 1.1447 -7.6578 1.4393 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.6168 -4.9208 -0.8886 33 1 0.6175 -4.9205 0.8914 34 1 2.8340 -5.9124 0.7812 35 1 0.5847 -7.1889 -0.5875 36 1 3.3068 -8.4424 -0.0063 37 1 2.6750 -8.0551 -1.6250 38 1 2.3309 -10.4668 -0.9793 39 1 0.8048 -9.6082 -1.3123 40 1 1.7544 -11.1922 4.7936 41 1 3.0856 -11.3855 3.5318 42 1 -0.5757 -8.8628 0.9224 43 1 0.2088 -9.3209 2.4560 44 1 2.0592 -7.7642 2.0228 45 1 0.5187 -6.8827 1.8813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200461460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:26 Heat of formation + Delta-G solvation = -68.659525 kcal Electronic energy + Delta-G solvation = -28935.123542 eV Core-core repulsion = 24569.810545 eV Total energy + Delta-G solvation = -4365.312997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.45355 -41.62389 -40.23653 -39.24045 -37.96216 -37.35269 -36.40136 -35.78055 -33.29762 -32.67851 -31.93250 -29.19038 -28.36276 -26.66363 -25.63279 -24.47398 -23.79678 -23.30480 -21.83613 -21.11529 -20.37876 -20.10409 -19.83144 -19.58639 -18.53762 -18.27492 -17.70227 -17.19680 -16.86589 -16.47256 -16.25265 -16.10456 -15.63545 -15.43110 -15.32730 -15.12798 -14.86529 -14.36855 -14.02131 -13.81594 -13.68926 -13.51551 -13.45718 -13.13081 -12.86958 -12.79925 -12.66287 -12.61756 -12.48885 -12.42764 -12.29886 -12.22169 -12.14462 -12.12675 -11.89818 -11.57398 -11.49626 -11.16666 -10.33632 -10.00970 -9.89320 -9.25500 -8.46334 -5.94796 -0.78518 0.40688 1.05804 1.39942 1.42423 1.52719 1.66745 2.06727 2.06969 2.29332 2.60569 2.90569 2.99281 3.10928 3.21322 3.46251 3.51380 3.72272 3.87654 3.98103 4.03279 4.14252 4.30148 4.33678 4.42048 4.43372 4.46762 4.51607 4.58948 4.61696 4.70999 4.75737 4.85872 4.98514 5.13254 5.14546 5.24531 5.41274 5.41678 5.92152 6.12302 6.14901 6.36837 6.42165 6.61081 6.81061 7.13486 7.57668 8.13208 8.70557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.001763 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.344149 B =15874.632002 C =16482.591892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.680 5.680 14 C 0.088 3.912 15 C -0.113 4.113 16 C 0.116 3.884 17 N -0.595 5.595 18 C 0.543 3.457 19 O -0.573 6.573 20 C -0.142 4.142 21 H 0.169 0.831 22 C -0.080 4.080 23 C -0.077 4.077 24 H 0.180 0.820 25 N 0.016 4.984 26 O -0.145 6.145 27 O -0.204 6.204 28 C 0.107 3.893 29 C -0.161 4.161 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.344 0.656 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -21.908 6.423 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.513 6.513 12 C -0.065 4.065 13 N -0.311 5.311 14 C -0.022 4.022 15 C -0.152 4.152 16 C -0.006 4.006 17 N -0.326 5.326 18 C 0.331 3.669 19 O -0.453 6.453 20 C -0.164 4.164 21 H 0.186 0.814 22 C -0.117 4.117 23 C -0.177 4.177 24 H 0.197 0.803 25 N 0.535 4.465 26 O -0.370 6.370 27 O -0.412 6.412 28 C -0.016 4.016 29 C -0.201 4.201 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.179 0.821 41 H 0.165 0.835 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.769 -21.865 4.889 22.474 hybrid contribution -0.531 0.686 0.772 1.161 sum -2.300 -21.179 5.660 22.043 Atomic orbital electron populations 1.69649 1.06727 1.29339 1.50234 1.26000 0.96542 1.02315 0.96323 0.85022 0.77796 0.76839 0.78896 1.19910 1.19524 1.19683 1.19610 0.92670 0.84130 1.50023 0.90440 1.41928 1.09345 1.04702 1.65042 1.20999 0.88280 0.86313 0.82104 1.90500 1.16037 1.88021 1.56718 1.21550 0.93971 0.87750 1.03188 1.60149 1.18761 1.00684 1.51460 1.21679 0.96896 0.87683 0.95892 1.21794 0.98203 0.92846 1.02361 1.21689 0.99802 0.96871 0.82249 1.48093 1.52005 1.15635 1.16865 1.19457 0.79411 0.81763 0.86280 1.90749 1.41228 1.47959 1.65338 1.22865 1.05451 0.93838 0.94207 0.81407 1.23932 0.99719 0.88776 0.99316 1.25084 0.97424 0.93722 1.01420 0.80314 1.44086 1.00642 1.00692 1.01116 1.94523 1.61928 1.65265 1.15291 1.94612 1.59683 1.08238 1.78652 1.22128 0.93952 0.86648 0.98826 1.22716 1.01753 0.97812 0.97793 0.91298 0.76907 0.87884 0.91010 0.83738 0.89132 0.92509 0.90242 0.89867 0.89321 0.82116 0.83537 0.88787 0.87156 0.91255 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.11 13.05 21.66 0.28 -47.83 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 41.90 29.55 68.60 2.03 43.93 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 8 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 9 N -0.57 -28.10 5.29 -306.98 -1.62 -29.72 16 10 C 0.44 19.51 7.82 87.66 0.69 20.20 16 11 O -0.63 -33.43 15.78 -3.09 -0.05 -33.48 16 12 C 0.07 2.01 5.96 85.55 0.51 2.52 16 13 N -0.68 -18.16 5.87 -495.44 -2.91 -21.07 16 14 C 0.09 1.50 2.43 44.94 0.11 1.61 16 15 C -0.11 -1.91 5.69 30.67 0.17 -1.73 16 16 C 0.12 1.66 6.43 86.36 0.56 2.21 16 17 N -0.59 -7.35 2.97 -818.06 -2.43 -9.77 16 18 C 0.54 8.08 7.48 87.66 0.66 8.74 16 19 O -0.57 -13.04 15.67 -3.04 -0.05 -13.09 16 20 C -0.14 -1.27 4.86 -11.54 -0.06 -1.33 16 21 H 0.17 0.83 6.81 -2.38 -0.02 0.81 16 22 C -0.08 -0.45 9.72 30.59 0.30 -0.16 16 23 C -0.08 -0.93 6.42 44.99 0.29 -0.64 16 24 H 0.18 2.42 7.67 -2.39 -0.02 2.40 16 25 N 0.02 0.28 4.34 -169.39 -0.73 -0.46 16 26 O -0.14 -2.54 18.28 18.88 0.35 -2.19 16 27 O -0.20 -4.62 19.24 18.89 0.36 -4.26 16 28 C 0.11 0.80 6.33 86.51 0.55 1.35 16 29 C -0.16 -1.89 5.35 30.81 0.16 -1.72 16 30 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 31 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 32 H 0.10 2.76 8.06 -2.39 -0.02 2.74 16 33 H 0.07 1.76 7.41 -2.39 -0.02 1.74 16 34 H 0.34 9.94 8.18 -89.69 -0.73 9.20 16 35 H 0.09 1.39 7.80 -2.39 -0.02 1.37 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.45 7.01 -2.39 -0.02 1.44 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.16 0.38 7.63 -2.39 -0.02 0.36 16 41 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.50 8.14 -2.38 -0.02 0.49 16 43 H 0.11 0.33 5.67 -2.39 -0.01 0.31 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.98 7.42 -2.39 -0.02 0.96 16 Total: -1.00 -74.43 380.88 0.03 -74.40 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.41 Total: 30.34 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.21 Total: 13.20 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -7.41 Total: -108.85 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: 0.61 Total: -53.02 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -74.43 0.03 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200461460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.741 kcal (2) G-P(sol) polarization free energy of solvation -74.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds