Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48493 * 109.47261 * 240.00150 * 3 2 1 5 5 H 1.48497 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46921 * 120.00043 * 3 2 1 7 7 C 1.38948 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00389 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99958 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00092 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47002 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99762 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.52447 * 324.92147 * 14 13 12 16 16 C 1.53034 * 109.49774 * 85.00429 * 14 13 12 17 17 C 1.53035 * 109.54165 * 181.31698 * 16 14 13 18 18 C 1.53199 * 109.31146 * 298.63463 * 17 16 14 19 19 N 1.46927 * 108.77514 * 54.62952 * 18 17 16 20 20 C 1.34776 * 120.62528 * 126.36811 * 19 18 17 21 21 O 1.21284 * 119.99372 * 179.97438 * 20 19 18 22 22 C 1.50695 * 120.00361 * 0.02562 * 20 19 18 23 23 H 1.08997 * 110.62205 * 38.63006 * 22 20 19 24 24 C 1.54094 * 110.67423 * 275.86946 * 22 20 19 25 25 O 1.45703 * 104.00520 * 241.75079 * 24 22 20 26 26 C 1.33763 * 109.47834 * 359.75317 * 25 24 22 27 27 O 1.21519 * 123.06859 * 179.97438 * 26 25 24 28 28 N 1.34005 * 113.86068 * 359.97438 * 26 25 24 29 29 C 1.46921 * 118.73774 * 306.64819 * 19 18 17 30 30 H 0.97006 * 120.00019 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99584 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46827 * 60.00473 * 12 10 9 33 33 H 1.09001 * 109.47020 * 299.99722 * 12 10 9 34 34 H 1.00898 * 110.99717 * 56.05156 * 13 12 10 35 35 H 1.08998 * 109.46634 * 61.29160 * 16 14 13 36 36 H 1.09010 * 109.45047 * 301.32985 * 16 14 13 37 37 H 1.08993 * 109.50222 * 178.68313 * 17 16 14 38 38 H 1.08997 * 109.52388 * 58.59699 * 17 16 14 39 39 H 1.09007 * 109.58263 * 294.84641 * 18 17 16 40 40 H 1.08997 * 109.58871 * 174.41914 * 18 17 16 41 41 H 1.08994 * 110.73204 * 123.01388 * 24 22 20 42 42 H 1.09004 * 110.42971 * 0.33229 * 24 22 20 43 43 H 0.97001 * 125.55884 * 179.97438 * 28 26 25 44 44 H 1.09007 * 109.58211 * 173.14459 * 29 19 18 45 45 H 1.09000 * 109.59011 * 293.56219 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9796 -0.0007 14 6 1.4977 -7.2709 -0.0008 15 1 0.5853 -7.1904 0.5900 16 6 1.1431 -7.6596 -1.4378 17 6 0.3845 -8.9887 -1.4363 18 6 1.2803 -10.0826 -0.8466 19 7 1.7438 -9.6507 0.4791 20 6 1.5643 -10.4369 1.5589 21 8 1.9519 -10.0692 2.6478 22 6 0.8831 -11.7732 1.4133 23 1 1.1881 -12.2607 0.4874 24 6 -0.6486 -11.6106 1.4572 25 8 -1.0514 -12.3792 2.6276 26 6 0.0297 -12.9220 3.1985 27 8 -0.0240 -13.6143 4.1958 28 7 1.1775 -12.6325 2.5703 29 6 2.4011 -8.3429 0.6061 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.6165 -4.9209 -0.8898 33 1 0.6172 -4.9205 0.8903 34 1 2.8334 -5.9126 0.7802 35 1 2.0574 -7.7640 -2.0220 36 1 0.5166 -6.8844 -1.8795 37 1 0.1119 -9.2532 -2.4579 38 1 -0.5177 -8.8925 -0.8323 39 1 2.1385 -10.2434 -1.4993 40 1 0.7125 -11.0081 -0.7515 41 1 -1.1059 -12.0189 0.5560 42 1 -0.9166 -10.5611 1.5786 43 1 2.0591 -12.9358 2.8380 44 1 2.5725 -8.1209 1.6594 45 1 3.3525 -8.3588 0.0744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207960436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = -127.519983 kcal Electronic energy + Delta-G solvation = -29547.691460 eV Core-core repulsion = 25179.826082 eV Total energy + Delta-G solvation = -4367.865378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.37428 -40.49018 -38.60544 -37.87113 -37.53873 -35.42730 -35.15822 -33.91553 -32.66865 -31.35791 -31.05837 -29.72405 -26.48712 -26.38183 -24.72301 -23.87161 -22.94185 -22.89930 -20.99747 -19.78747 -19.23897 -18.78940 -18.40647 -17.93935 -17.39194 -16.92555 -16.44654 -16.01410 -15.58552 -15.43386 -15.15960 -14.93381 -14.86440 -14.73260 -14.46216 -14.17087 -14.13353 -13.90282 -13.76504 -13.58748 -13.25916 -12.96961 -12.63283 -12.33230 -12.01420 -11.62705 -11.56741 -11.43358 -11.31705 -11.16453 -11.14251 -10.99354 -10.93067 -10.82341 -10.46880 -10.24837 -9.79158 -9.53725 -9.19633 -8.53750 -8.20060 -8.00441 -6.45227 -3.86259 1.80164 1.93235 2.22571 2.41055 2.97903 3.17757 3.23840 3.28078 3.39029 3.58841 3.85487 3.92785 3.96543 4.17064 4.31063 4.41973 4.43592 4.49703 4.57948 4.69800 4.76318 4.88326 5.04766 5.06996 5.18940 5.23314 5.32949 5.46918 5.54996 5.63256 5.71497 5.84388 5.88624 5.92287 6.08577 6.21415 6.23282 6.66698 6.75477 7.07630 7.45657 7.51347 7.51788 7.60022 8.01924 8.56808 9.13954 9.49781 10.00895 10.72325 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022739 B = 0.001925 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.052661 B =14540.510396 C =14827.667602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.660 5.660 14 C 0.074 3.926 15 H 0.046 0.954 16 C -0.111 4.111 17 C -0.136 4.136 18 C 0.100 3.900 19 N -0.601 5.601 20 C 0.503 3.497 21 O -0.516 6.516 22 C 0.076 3.924 23 H 0.128 0.872 24 C 0.055 3.945 25 O -0.320 6.320 26 C 0.652 3.348 27 O -0.515 6.515 28 N -0.711 5.711 29 C 0.110 3.890 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.352 0.648 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.441 0.559 44 H 0.094 0.906 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 -25.148 -5.318 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.080 4.080 13 N -0.294 5.294 14 C -0.037 4.037 15 H 0.064 0.936 16 C -0.150 4.150 17 C -0.175 4.175 18 C -0.023 4.023 19 N -0.335 5.335 20 C 0.287 3.713 21 O -0.390 6.390 22 C -0.034 4.034 23 H 0.146 0.854 24 C -0.021 4.021 25 O -0.230 6.230 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.384 5.384 29 C -0.013 4.013 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.172 0.828 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.285 0.715 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.444 -25.094 -4.827 25.670 hybrid contribution -0.067 0.962 0.701 1.192 sum -2.511 -24.132 -4.127 24.611 Atomic orbital electron populations 1.69602 1.05945 1.28325 1.50397 1.25272 0.95652 0.99769 0.97235 0.85905 0.78764 0.80386 0.79102 1.19857 1.20965 1.19890 1.19654 0.93354 0.82207 1.47786 0.87943 1.41853 1.09200 1.04609 1.64220 1.19763 0.88382 0.84672 0.84688 1.90528 1.13717 1.87029 1.55483 1.21716 0.94263 0.90839 1.01202 1.60102 1.18672 0.99237 1.51356 1.21751 0.95887 0.89496 0.96530 0.93588 1.21567 1.01010 0.95944 0.96446 1.21964 0.98538 0.95222 1.01753 1.21962 0.99081 0.97750 0.83469 1.48067 1.58861 1.18848 1.07749 1.20525 0.80314 0.85967 0.84483 1.90805 1.49352 1.73220 1.25637 1.22350 0.96692 0.91437 0.92953 0.85414 1.24265 0.90240 0.98913 0.88674 1.87320 1.31076 1.63143 1.41494 1.18417 0.79536 0.79176 0.82466 1.91111 1.84927 1.40434 1.23389 1.45695 1.10359 1.52535 1.29783 1.21743 0.95782 0.80589 1.03177 0.91780 0.77464 0.89557 0.93783 0.82787 0.90631 0.91045 0.89872 0.91345 0.90128 0.90009 0.85983 0.87133 0.71508 0.88807 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 11 O -0.58 -15.44 15.78 5.55 0.09 -15.36 16 12 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 13 N -0.66 -9.57 5.94 -108.10 -0.64 -10.21 16 14 C 0.07 0.77 2.63 -67.82 -0.18 0.59 16 15 H 0.05 0.50 7.80 -51.93 -0.41 0.09 16 16 C -0.11 -0.91 5.40 -26.70 -0.14 -1.06 16 17 C -0.14 -0.60 6.08 -26.61 -0.16 -0.76 16 18 C 0.10 0.33 6.24 -3.71 -0.02 0.30 16 19 N -0.60 -4.05 2.98 -173.03 -0.52 -4.56 16 20 C 0.50 4.07 6.81 -10.99 -0.07 4.00 16 21 O -0.52 -6.69 16.01 5.55 0.09 -6.61 16 22 C 0.08 0.36 3.14 -68.19 -0.21 0.15 16 23 H 0.13 0.11 6.78 -51.93 -0.35 -0.24 16 24 C 0.05 0.23 7.46 37.73 0.28 0.52 16 25 O -0.32 -2.98 11.09 -37.81 -0.42 -3.39 16 26 C 0.65 7.12 9.16 53.71 0.49 7.61 16 27 O -0.51 -7.75 18.04 -19.12 -0.35 -8.09 16 28 N -0.71 -5.26 5.66 -59.36 -0.34 -5.59 16 29 C 0.11 1.02 5.67 -3.94 -0.02 1.00 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 32 H 0.09 1.29 7.41 -51.93 -0.38 0.91 16 33 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.35 5.43 8.06 -39.29 -0.32 5.11 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.67 7.43 -51.92 -0.39 0.28 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 40 H 0.08 0.01 5.39 -51.93 -0.28 -0.27 16 41 H 0.12 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.11 0.47 7.72 -51.93 -0.40 0.07 16 43 H 0.44 2.74 8.96 -40.82 -0.37 2.38 16 44 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -37.42 373.09 -7.26 -44.68 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.04 Total: 9.97 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -0.40 Total: 15.24 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.83 Total: -57.87 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.59 Total: -33.45 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.42 -7.26 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207960436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.841 kcal (2) G-P(sol) polarization free energy of solvation -37.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds